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Pull requests: nf-core/modules

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187 Open 8,408 Closed
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Pull requests list

Add regenie/runl1 module
#11768 opened May 26, 2026 by lyh970817 Contributor • Draft
13 of 14 tasks
Add regenie/runl0 module
#11767 opened May 26, 2026 by lyh970817 Contributor • Draft
13 of 14 tasks
Test pycloneevi size/xs
#11766 opened May 26, 2026 by SPPearce Contributor Loading…
Use sanitized snapshots for gcta/makegrmpart tests
#11764 opened May 26, 2026 by lyh970817 Contributor Loading…
7 tasks done
feat: support task.ext.args in sentieon/gvcftyper size/xs
#11763 opened May 26, 2026 by nicorap Contributor Loading…
11 of 14 tasks
2
Upgrade environment schema to support additional scenarios
#11758 opened May 25, 2026 by toniher Member Loading…
Add Zarr support to scanpy/filter
#11756 opened May 24, 2026 by ehsanestaji Contributor Loading…
14 of 17 tasks
12
bump bcl-convert size/s
#11749 opened May 22, 2026 by matthdsm Contributor Loading…
17 tasks
Update to topics hostile/*
#11748 opened May 22, 2026 by LouisLeNezet Contributor Loading…
17 tasks
2
@LouisLeNezet
Update DEEPVARIANT/* to 1.10.0
#11743 opened May 22, 2026 by awgymer Contributor Loading…
17 tasks
8
Add dotseq/dotseq
#11742 opened May 21, 2026 by pinin4fjords Member Loading…
7 tasks done
feat(custom): orfnormalise + orfmerge modules + orftable_fasta_gtf_buildorfcatalogue subworkflow
#11740 opened May 21, 2026 by pinin4fjords Member Loading…
5 tasks done
Add regenie/splitl0 module
#11739 opened May 21, 2026 by lyh970817 Contributor • Draft
13 of 14 tasks
feat(vcontact3): add vcontact3/prepareddatabases module
#11738 opened May 21, 2026 by olawal1001 • Draft
17 tasks
13
Add new module: savana/run Ready for Review
#11737 opened May 21, 2026 by manascripts Member Loading…
10 of 13 tasks
6
new module: custom/bed12codonpositions Ready for Review
#11733 opened May 21, 2026 by pinin4fjords Member Loading…
4 tasks done
1
Update phasing and imputation sbwf
#11731 opened May 21, 2026 by LouisLeNezet Contributor Loading…
17 tasks
@LouisLeNezet
feat(simpleaf): add simpleaf/multiplexquant module
#11724 opened May 20, 2026 by an-altosian Contributor Loading…
3 tasks
3
Add new module: octopusv/stat Ready for Review
#11719 opened May 20, 2026 by manascripts Member Loading…
11 of 13 tasks
9
add anvi-gen-contigs-database module Ready for Review
#11713 opened May 20, 2026 by telatin Contributor Loading…
12 of 17 tasks
1
Add samplesheetparser/diff module
#11711 opened May 20, 2026 by chaitanyakasaraneni Contributor Loading…
11 of 14 tasks
Add Zarr support to scanpy/pca
#11697 opened May 19, 2026 by ehsanestaji Contributor Loading…
12 of 14 tasks
6
Mobsuite typer
#11664 opened May 17, 2026 by jfy133 Member Loading…
17 tasks
1
New module: GRIMER
#11663 opened May 17, 2026 by Jonahnki Loading…
5 tasks done
1
22
Add new module: flumut size/m
#11662 opened May 17, 2026 by EdoardoGiussani Loading…
9 of 11 tasks
1
2
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