Fix order-dependent combine(by:) silently dropping samples in QUANT#460
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Fix order-dependent combine(by:) silently dropping samples in QUANT#460jonasscheid wants to merge 2 commits into
jonasscheid wants to merge 2 commits into
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…ts plain map Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
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Unwrap the
groupKeyto its plain[id]map beforecombine(by:0)in the QUANT subworkflow.GroupKey.equals()is asymmetric, so the groupKey-vs-map combine silently dropped samples depending on task arrival order (jittery on AWS Batch). Closes #459.PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).