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Add support for a user config file #65

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Add support for a user config file #65

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5 changes: 3 additions & 2 deletions humann/config.py
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Original file line number Diff line number Diff line change
Expand Up @@ -104,8 +104,9 @@ def log_settings():
# User config file
user_edit_config_file="humann.cfg"

full_path_user_edit_config_file=os.path.join(os.path.dirname(os.path.abspath(__file__)),
user_edit_config_file)
full_path_user_edit_config_file=os.getenv('HUMAnN_CONFIG',
os.path.join(os.path.dirname(os.path.abspath(__file__)),
user_edit_config_file))

def update_user_edit_config_file_single_item(section,name,value):
"""
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