Add support for a user config file#65
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If HUMAnN is installed in a directory a user does not have write access
to, this patch allowes the config file to be elsewhere, with the path
set in the environment variable: HUMAnN_CONFIG
for example:
export HUMAnN_CONFIG="/projects/databases/humann.cfg"
Copy the humann.cfg from the install tree to the above path, then
(with this environemtn variable set,) alternate locations for the
databases can be configured. For example:
humann_config --update database_folders nucleotide /projects/databases/chocophlan
humann_config --update database_folders protein /projects/databases/uniref
humann_config --update database_folders utility_mapping /projects/databases/utility_mapping
Tested with HUMAnN versions 3.6 and 3.9
Tony
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Description
If HUMAnN is installed in a directory a user does not have write access to,
this patch allowes the config file to be elsewhere, with the path set in the
environment variable: HUMAnN_CONFIG
for example:
export HUMAnN_CONFIG="/projects/databases/humann.cfg"Copy the humann.cfg from the install tree to the above path,
then (with this environemtn variable set,) alternate locations for
the databases can be configured.
For example:
Tested with HUMAnN versions 3.6 and 3.9
Tony