peptide-property-ng: unified Depthcharge peptide property predictor#404

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feat/peptide-property-ng

Commits on May 22, 2026

Commits on May 23, 2026

feat(peptide-property-ng): wire per-dataset instrument/acq from timstof_catalog
theGreatHerrLebert
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experiment(peptide-property-ng): CE default 0.26 (timsTOF-ms2 median) for Sage examples
theGreatHerrLebert
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fix(peptide-property-ng): masked SA -> target > 0 (canonical Prosit/v4 convention)
theGreatHerrLebert
committed

Commits on May 24, 2026

feat(peptide-property-ng): pooled intensity head + per-PSM CE calibration
theGreatHerrLebert
committed

Commits on May 25, 2026

fix(peptide-property-ng): clamp_eps in masked_spectral_angle + checkpoint metadata
theGreatHerrLebert
committed

Commits on Jun 8, 2026

peptide-property-ng: RT-sigma head + IM-sigma loss for timsim peak shapes
theGreatHerrLebert
committed

Commits on Jun 11, 2026

peptide-property-ng: HF-corpus data loader + train wiring
theGreatHerrLebert
committed

Commits on Jun 12, 2026

peptide-property-ng: HF loader prefers native tier1.rt_aligned (v0.2); schema-aware (falls back for v0.1)
theGreatHerrLebert
committed