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--alignEndsType on pairs: extend a mate's two ends while stitching (100M, AS:182 as STAR) - #368

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--alignEndsType on pairs: extend a mate's two ends while stitching (100M, AS:182 as STAR)#368
BenjaminDEMAILLE wants to merge 2 commits into
perf/hotpathsfrom
fix/end-to-end-pairs

End-to-end extension: check the chromosome edge before the mate spacer

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