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1. nichenetr nichenetr Public

   NicheNet: predict active ligand-target links between interacting cells

   R 652 136

2. FlowSOM FlowSOM Public

   Using self-organizing maps for visualization and interpretation of cytometry data

   R 35 8

3. multinichenetr multinichenetr Public

   MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

   HTML 188 21

4. PeacoQC PeacoQC Public

   Peak-based selection of high quality cytometry data

   R 21 11

5. spotless-benchmark spotless-benchmark Public

   A repository for benchmarking spatial deconvolution and mapping tools

   R 36 5

6. CytoNorm CytoNorm Public

   R library to normalize cytometry data

   R 40 11