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Merged
marco-mariotti merged 3 commits into from
Apr 23, 2026
Merged

To pyranges0 #406

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4a8de1f
updated links to v0/v1 using Codex + manual review
marco-mariotti Apr 23, 2026
1413192
further to_pr0 changes
marco-mariotti Apr 23, 2026
d7100b9
Merge branch 'master' into to_pyranges0
marco-mariotti Apr 23, 2026
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3 changes: 2 additions & 1 deletion docs/conf.py
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# -- Project information -----------------------------------------------------

project = 'pyranges'
project = 'pyranges0'
copyright = '2023, Endre Bakken Stovner and Marco Mariotti'
author = 'Endre Bakken Stovner and Marco Mariotti'

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# a list of builtin themes.
#
html_theme = 'sphinx_rtd_theme'
html_title = 'pyranges0'

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
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11 changes: 9 additions & 2 deletions docs/index.rst
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You can adapt this file completely to your liking, but it should at least
contain the root `toctree` directive.

The PyRanges documentation
==========================
The pyranges0 documentation
===========================
PyRanges is a Python library specifically designed for efficient and intuitive manipulation of genomics data,
particularly genomic intervals (like genes, genomic features, or reads).
The library is optimized for fast querying and manipulation of genomic annotations.

PyRanges is open source, and hosted at GitHub: https://github.com/pyranges/pyranges0


Deprecation note
~~~~~~~~~~~~~~~~

This repo currently hosts the "version 0" of pyranges. A redesigned, faster version 1 is available at https://github.com/pyranges/pyranges1
Version 1 will soon replace version 0. We encourage existing v0 users to migrate to v1 (see guide at https://pyranges1.readthedocs.io/en/latest/migration_guide.html), and new users to directly adopt v1. Read about v1 in our preprint at https://doi.org/10.64898/2025.12.11.693639


Citation
~~~~~~~~

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