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@deisseroth-lab Deisseroth Lab at Stanford University

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    24 repositories

    • website-cms

      Public
      A generic and self-hostable content management system for creating, updating, and deploying sites.
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated Dec 2, 2025Dec 2, 2025

    • patchclamp

      Public
      Scripts for python analysis of patch-clamp recordings
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated Feb 22, 2023Feb 22, 2023

    • dask-docker

      Public
      Docker images for dask
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •152•0•0•0•Updated Feb 8, 2023Feb 8, 2023

    • alphafold

      Public
      Open source code for AlphaFold.
      Python
      •
      Apache License 2.0
      •2.6k•1•0•0•Updated Feb 8, 2023Feb 8, 2023

    • docker-stacks

      Public
      Ready-to-run Docker images containing Jupyter applications
      Python
      •
      Other
      •3k•0•0•0•Updated Jan 27, 2023Jan 27, 2023

    • two-photon

      Public
      Common scripts, libraries, and utilities for 2p experiments
      Jupyter Notebook
      •7•9•6•1•Updated May 17, 2022May 17, 2022

    • datajoint-python

      Public
      Relational data pipelines for the science lab
      Python
      •
      GNU Lesser General Public License v2.1
      •96•0•0•0•Updated Jan 21, 2022Jan 21, 2022

    • cellpose

      Public
      a generalist algorithm for cellular segmentation
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •607•2•0•0•Updated Jan 16, 2022Jan 16, 2022

    • brainreg_sherlock

      Public
      Python
      •0•0•0•0•Updated Jan 14, 2022Jan 14, 2022

    • k8s-node-termination-handler

      Public
      A solution to gracefully handle GCE VM terminations in kubernetes clusters
      Go
      •
      Apache License 2.0
      •53•0•0•0•Updated Jan 7, 2022Jan 7, 2022

    • rclone_sync

      Public
      Runs rclone to sync to Google Drive — Works within an HPC environment — Tries to catch errors gracefully and informatively
      Shell
      •
      GNU General Public License v3.0
      •2•0•0•1•Updated Jan 4, 2022Jan 4, 2022

    • bg-atlasapi

      Public
      A lightweight python module to interact with atlases for systems neuroscience
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •65•0•0•0•Updated Jan 1, 2022Jan 1, 2022

    • suite2p

      Public
      cell detection in calcium imaging recordings
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •270•0•0•1•Updated Nov 18, 2021Nov 18, 2021

    • fpocket

      Public
      fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing…
      C
      •
      MIT License
      •86•1•0•0•Updated Oct 18, 2021Oct 18, 2021

    • data-sharing-examples

      Public
      Python
      •1•0•0•1•Updated Oct 9, 2021Oct 9, 2021

    • miniforge-images

      Public
      Container images that include conda-forge's miniforge setup
      Dockerfile
      •
      BSD 3-Clause "New" or "Revised" License
      •18•0•0•0•Updated Sep 1, 2021Sep 1, 2021

    • dcon-core

      Public
      Aperture plane light field deconvolution in the cloud
      Python
      •0•0•0•0•Updated Jul 26, 2021Jul 26, 2021

    • TeraStitcher

      Public
      A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images
      C++
      •
      Other
      •34•0•0•0•Updated Jul 13, 2021Jul 13, 2021

    • croat-public

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Sep 1, 2020Sep 1, 2020

    • CNMF_E

      Public
      Constrained Nonnegative Matrix Factorization for microEndoscopic data
      MATLAB
      •
      GNU General Public License v3.0
      •74•0•0•0•Updated Jul 27, 2020Jul 27, 2020

    • multifiber-mirror

      Public
      Private (eventually) fork of multifiber repository for new features.
      MATLAB
      •0•0•2•0•Updated Jul 23, 2020Jul 23, 2020

    • starmap

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 1, 2020Jul 1, 2020

    • cosmos-tools

      Public
      Software tools for Cortical Observation by Synchronous Multifocal Optical Sampling.
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •4•5•0•0•Updated May 21, 2020May 21, 2020

    • multifiber

      Public
      A GUI and library for doing multi-fiber photometry
      MATLAB
      •5•19•4•0•Updated Oct 12, 2017Oct 12, 2017
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