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@colomoto Consortium for Logical Models and Tools

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    Repositories list

    19 repositories

    • colomoto-docker

      Public
      The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
      dockersystems-biologyjupyter-notebook
      dockersystems-biologyjupyter-notebookmodel-analysisbiological-networks
      Jupyter Notebook
      •14•27•5•1•Updated Oct 21, 2026Oct 21, 2026

    • colomoto-conda

      Public
      Conda recipes for CoLoMoTo related tools
      Shell
      •0•1•0•0•Updated Oct 19, 2026Oct 19, 2026

    • bioLQM

      Public
      toolkit for the manipulation and analysis of Logical Qualitative Models of biological regulatory networks
      Java
      •
      GNU Lesser General Public License v3.0
      •15•21•9•2•Updated Oct 17, 2026Oct 17, 2026

    • pyMaBoSS

      Public
      python interface for the MaBoSS software
      Jupyter Notebook
      •6•9•0•0•Updated Jul 24, 2026Jul 24, 2026

    • colomoto-docker-py

      Public
      Helper script for launching the CoLoMoTo Docker distribution
      Python
      •1•0•0•0•Updated Feb 7, 2026Feb 7, 2026

    • colomoto-jupyter

      Public
      CoLoMoTo helper modules and functions
      Python
      •3•4•5•0•Updated Feb 7, 2026Feb 7, 2026

    • colomoto-tutorial-sizek

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Sep 5, 2025Sep 5, 2025

    • colomoto.github.io

      Public
      The colomoto website
      HTML
      •1•0•0•0•Updated May 4, 2025May 4, 2025

    • colomoto-web

      Public
      static generated web site for CoLoMoTo
      Python
      •0•0•0•1•Updated May 31, 2024May 31, 2024

    • ERODE-CoLoMoTo

      Public
      Jupyter Notebook
      •0•2•0•0•Updated Jun 7, 2023Jun 7, 2023

    • mddlib

      Public
      Simple toolkit for the manipulation of Multi-valued Decision Diagrams
      Java
      •
      GNU Lesser General Public License v3.0
      •1•4•0•0•Updated Jun 30, 2022Jun 30, 2022

    • Biosimulators_mpbn

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 12, 2022Jan 12, 2022

    • bns-python

      Public
      Python
      •0•0•0•0•Updated Nov 30, 2020Nov 30, 2020

    • boolSim-python

      Public
      Python interface to boolSim
      Python
      •0•0•1•0•Updated Jul 30, 2020Jul 30, 2020

    • espresso-logic-minimizer

      Public
      A modernized version of the Espresso heuristic logic minimizer original C code
      C
      •
      MIT License
      •12•0•0•0•Updated May 5, 2020May 5, 2020

    • colomoto-maven-repository

      Public
      maven repository
      0•0•0•0•Updated Apr 28, 2020Apr 28, 2020

    • colomoto-docker-base

      Public archive
      Dockerfile
      •0•0•0•0•Updated Apr 23, 2020Apr 23, 2020

    • colomoto-benchmarks

      Public
      Python
      •0•1•1•0•Updated Apr 14, 2017Apr 14, 2017

    • gh-documentation

      Public
      Generate and host some javadoc
      Shell
      •0•2•0•0•Updated Jul 17, 2012Jul 17, 2012
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