Repositories list

• benchmarking-phenotyping-medaka-ziram

  Public
  Code for the paper, "Benchmarking Image Representations for Biological Phenotyping: From Classification to Heritability." (BIC@ECCV, 2026)

  00 forks•00 stars•00 issues•00 pull requests•Updated Sep 9, 2026Sep 9, 2026

• flexlmm

  Public
  Flexible linear mixed model framework for Genome Wide Association Studies

  Nextflow

  •

  MIT License

  •00 forks•1919 stars•33 issues•00 pull requests•Updated Jun 9, 2026Jun 9, 2026

• varexplore

  Public
  Explore genetic variants linked around a variant of interest for low-coverage sequencing data

  Nextflow

  •

  MIT License

  •00 forks•33 stars•00 issues•00 pull requests•Updated Nov 14, 2025Nov 14, 2025

• heart_rate_tmp_gxe

  Public
  Nextflow

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 14, 2025Nov 14, 2025

• heart_rate_tmp_pairwise_gxg

  Public
  Nextflow

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 14, 2025Nov 14, 2025

• heart_rate_tmp_simulation_gxg

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 14, 2025Nov 14, 2025

• Delphi

  Public
  Modelling human health trajectories using generative transformers

  Jupyter Notebook

  •

  MIT License

  •124124 forks•00 stars•00 issues•00 pull requests•Updated Sep 22, 2025Sep 22, 2025

• medaka_behaviour_pilot

  Public
  Repository describing the analysis of bold-shy behaviours in different medaka fish strains.

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 29, 2025Mar 29, 2025

• ukb_smoke_copd_lung_cancer_gxe

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 25, 2024Sep 25, 2024

• FEHAT

  Public
  Software to detect heart rate from medaka embryos

  Python

  •

  GNU General Public License v3.0

  •22 forks•77 stars•00 issues•00 pull requests•Updated Sep 19, 2024Sep 19, 2024

• stitchimpute

  Public
  Pipeline that uses STITCH for imputing genotypes from low-coverage NGS data in a population.

  Jupyter Notebook

  •

  MIT License

  •00 forks•66 stars•11 issue•00 pull requests•Updated Aug 22, 2024Aug 22, 2024

• CNest

  Public
  Copy Number Methods for Detection and Genome Wide Association Tests

  C++

  •55 forks•00 stars•00 issues•00 pull requests•Updated Nov 3, 2023Nov 3, 2023

• somites

  Public
  HTML

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 16, 2023Aug 16, 2023

• MIKK_genome_main_paper

  Public
  Code for the paper describing the MIKK panel and its genome

  HTML

  •

  MIT License

  •33 forks•00 stars•00 issues•00 pull requests•Updated Feb 9, 2022Feb 9, 2022

• MIKK_genome_companion_paper

  Public
  Repository containing the code used for the MIKK panel genome analysis

  R

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Dec 14, 2021Dec 14, 2021

• MIKK_GeneNetwork

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 20, 2021Sep 20, 2021

• Birney-pacman

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 2, 2021Sep 2, 2021

• foveafit

  Public
  R package for OCT analysis

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 12, 2021Jul 12, 2021