Repositories list

• ICbySleepHist

  Public
  Sorce code for the manuscript named "Initial Condition Decision to Ensure Reliable Circadian Phase Estimation With Shorter-Term Wearable Data"

  MATLAB

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 24, 2026Mar 24, 2026

• tor_model

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 6, 2026Mar 6, 2026

• scICE

  Public
  Julia

  •

  MIT License

  •55 forks•1717 stars•22 issues•00 pull requests•Updated Jan 23, 2026Jan 23, 2026

• scLENS

  Public
  Data-driven signal detection for unbiased scRNA-seq data analysis

  Julia

  •

  MIT License

  •33 forks•2323 stars•11 issue•00 pull requests•Updated Jan 22, 2026Jan 22, 2026

• noiseRPA

  Public
  A package for reproducing "Toward Single-Cell Control: Noise-Robust Perfect Adaptation in Biomolecular Systems"

  MATLAB

  •11 fork•00 stars•00 issues•00 pull requests•Updated Dec 6, 2025Dec 6, 2025

• scLENSpy

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 1, 2025Dec 1, 2025

• Ultrasensitive-gene-switch

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 6, 2025Nov 6, 2025

• NK-gating

  Public
  Code for the maunscript "Stress-induced self recognition by Natural Killer cells does not require HLA Class I "

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 30, 2025Sep 30, 2025

• 50-BOA

  Public
  MATLAB

  •22 forks•44 stars•11 issue•00 pull requests•Updated Aug 19, 2025Aug 19, 2025

• Hist-D

  Public
  A user-friendly computational package, HistD (History-Dependent initial condition decision method), to implement the history-dependent estimation approach in R

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 18, 2025Aug 18, 2025

• SeizureSANC

  Public
  MATLAB

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 7, 2025Jul 7, 2025

• SymScore

  Public
  A symbolic regression-based tool for generating interpretable and accurate score tables for shortened clinical questionnaires

  Jupyter Notebook

  •00 forks•11 star•00 issues•00 pull requests•Updated Dec 14, 2024Dec 14, 2024

• NK_ActL

  Public
  MATLAB

  •11 fork•00 stars•00 issues•11 pull request•Updated Nov 17, 2024Nov 17, 2024

• IONISE

  Public
  IONISE is a user-friendly computational package developed for the gamma model approach, specifically targeting the SEIR (Susceptible-Exposed-Infectious-Removed)…

  R

  •

  MIT License

  •00 forks•66 stars•00 issues•00 pull requests•Updated Sep 8, 2024Sep 8, 2024

• GOBI

  Public
  MATLAB

  •66 forks•2323 stars•00 issues•00 pull requests•Updated Jul 15, 2024Jul 15, 2024

• The-mammalian-circadian-clock-with-PER-dependent-displacement

  Public
  Mathematica

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 14, 2024May 14, 2024

• FluxRPA

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 11, 2024May 11, 2024

• PDE_QSSA

  Public
  MATLAB

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 17, 2024Apr 17, 2024

• Heterogeneous_diffusion

  Public
  NetLogo

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 17, 2024Apr 17, 2024

• CircSANC

  Public
  Mathematical model for circadian regulation of sinoatrial nodal cell pacemaking function

  MATLAB

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 4, 2024Mar 4, 2024

• Ultrasensitive_Switch

  Public
  Codes for simulating timeseries of mRNA based on transcriptional switch models.

  Julia

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 21, 2024Feb 21, 2024

• Collective_phospho_circadian

  Public
  MATLAB

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 3, 2024Jan 3, 2024

• Density-PINNs

  Public
  This is the Python code, written in Jupyter, implementing Density Physics-Informed Neural Network (Density-PINN).

  Jupyter Notebook

  •11 fork•11 star•00 issues•00 pull requests•Updated Nov 10, 2023Nov 10, 2023

• SOMNI

  Public
  Sleep data imputation package

  Jupyter Notebook

  •00 forks•33 stars•00 issues•00 pull requests•Updated Oct 16, 2023Oct 16, 2023

• SimMCMC

  Public
  R

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 24, 2023Aug 24, 2023

• COMPILES

  Public
  COMPILES: Computational package for COMPutIng anaLytic positivE Steady states. steadyState.m is placed on this page as a preview of the code; the same file is i…

  decompositionsteady-statecrnt+ 2

  decompositionsteady-statecrntchemical-reaction-network-theorynetwork-translation

  MATLAB

  •00 forks•44 stars•00 issues•00 pull requests•Updated Jan 15, 2023Jan 15, 2023

• TOWARDZ

  Public
  TranslatiOn toward WeAkly Reversible and Deficiency Zero networks

  MATLAB

  •11 fork•00 stars•00 issues•00 pull requests•Updated Dec 4, 2022Dec 4, 2022

• MCQ_I

  Public
  The computational code for predicting the classification via RF based on either the MCQI-6 or the MCQI-14 .

  R

  •00 forks•33 stars•00 issues•00 pull requests•Updated Jun 20, 2022Jun 20, 2022

• SA_Drosophila_Clock

  Public
  MATLAB

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 7, 2022Feb 7, 2022

• EndemicSIRS

  Public
  Codes for simulating endemic transitions of infectious diseases based on a modified SIRS model.

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 5, 2022Feb 5, 2022