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nf-core / proteinfold Public

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Fork 69
Star 105

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Issues 92
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Clean alphafold3 outputs#468

Merged

JoseEspinosa merged 15 commits into

nf-core:devnf-core/proteinfold:devfrom

JoseEspinosa:outputsJoseEspinosa/nf-core-proteinfold:outputsCopy head branch name to clipboard

Feb 12, 2026

Conversation Commits15 (15)Checks Files changed

Merged

Clean alphafold3 outputs#468
JoseEspinosa merged 15 commits into
nf-core:devfrom
JoseEspinosa:outputs

Commits

Commits on Feb 11, 2026

Harmonised af3 outputs and added flaggable raw output (--save_intermediates)
JoseEspinosa
committed
Add missing comma
JoseEspinosa
committed
Remove cif sufix from converted pdb
JoseEspinosa
committed
Copy to raw after extract_metrics.py is run
JoseEspinosa
committed
Merge remote-tracking branch 'upstream/dev' into outputs
JoseEspinosa
committed
Make cache lenient
JoseEspinosa
committed

Commits on Feb 12, 2026

Merge branch 'dev' into outputs
JoseEspinosa
authored
Update alphafold3 snapshots
JoseEspinosa
committed
Add ptm and iptm to stub run of af3
JoseEspinosa
committed
Update alphafold3 not to break cache
JoseEspinosa
committed
Update snapshots after changing generate for report in output folder
JoseEspinosa
committed
Error if dbs with possible different names are not found
JoseEspinosa
committed
Update more snapshots failing to new report output folder
JoseEspinosa
committed
Update changelog
JoseEspinosa
committed
Apply suggestion from @vagkaratzas

JoseEspinosa
and
vagkaratzas
authored

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