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adding toil job store timeout - #414

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buehlere merged 1 commit into
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hotfix/cwl_timeout
Jun 16, 2026
Merged

adding toil job store timeout#414
buehlere merged 1 commit into
masterfrom
hotfix/cwl_timeout

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@buehlere

@buehlere buehlere commented Jun 16, 2026

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Error:

Marking ostensibly successful job '...' v1 that did not report in to the job store before --jobStoreTimeout as having been partitioned from us.
No log file is present, despite job failing: '...' v1

Job '...' v1 has no new version available after 600.0 seconds. Worker updates to the job store are delayed longer than the --jobStoreTimeout causing a failure.

Since IRIS is slower some jobs legitimately take longer than 600s to write their first checkpoint back to the job store.

See failed run here: http://isvvoyagerprod01.mskcc.org:5003/admin/orchestrator/job/2718e746-fbc5-466b-8952-c56b294f2a6e/change/

@buehlere
buehlere requested a review from sivkovic June 16, 2026 15:39
@buehlere
buehlere merged commit 27f6cab into master Jun 16, 2026
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2 participants