2n compare custom - #69

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price0416 wants to merge 34 commits into

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2nCompareCustom

Commits on Mar 11, 2020

Purity from Rdata when Input is cncf
arichards2564
authored
406c146

Commits on Mar 12, 2020

Merge pull request #32 from mskcc/arichards2564-cncfpurity
cband
authored
8a6e371

Commits on Apr 19, 2020

updating annotate-maf-wrapper to use Rdata file corresponding to the input seg/Rdata file. fixing github issue # 35 in gene-level function
cband
committed
b5e3b5c
versioning to 2.0.5
cband
committed
9822470
versioning to 2.0.5
cband
committed
5f25ca9

Commits on Apr 20, 2020

another fix to logic at gene-level to match what was in V1 of this script
cband
committed
f8d4faa

Commits on Apr 27, 2020

removed normalization for dipLogR to 0; fixed plotting issue with y-axis for icn; fixed issue with calculating discordant tcn
cband
committed
f2b3a46

Commits on May 26, 2020

adding clonality flag
cband
committed
d64f05e

Commits on May 27, 2020

bug fix
cband
committed
10716cc

Commits on Jun 1, 2020

bug fix in gene and arm level scripts where cn_state is set to INDETERMINATE when lcn is NA or when tcn > 9
cband
committed
478c5a2

Commits on Jun 6, 2020

forgot to update the version #
cband
committed
f566eb5

Commits on Jun 10, 2020

bug fix in aneuploidy_score calculation
MajoroMask
authored
dab616a

Commits on Jun 18, 2020

fix Dockerfile to use current repo for Facets
stevekm
committed
de9d148

Commits on Jun 19, 2020

add Facets installation to Dockerfile
stevekm
committed
eaefcb3

Commits on Jun 22, 2020

adding FGA to check_fit output
cband
committed
5872e69

Commits on Jul 8, 2020

Merge pull request #40 from mskcc/dockerfile
cband
authored
37b0780

Commits on Jul 9, 2020

syntax error
cband
committed
e8bb923
Merge branch 'master' of github.com:mskcc/facets-suite
cband
committed
1a806c7
upgrading version to 2.0.8
cband
committed
4b2757b

Commits on Aug 14, 2020

Update annotate-maf-wrapper.R
cband
authored
caef499

Commits on Oct 8, 2020

removed the runtype from sample ids in cncf output file
svural
committed
1c72905
Revert "removed the runtype from sample ids in cncf output file"
svural
committed
f3d0da4
Revert "Update annotate-maf-wrapper.R"
svural
committed
41a01fe

Commits on Apr 23, 2021

Update annotate-maf-wrapper.R
tischfis
authored
f2a4c53

Commits on Jan 26, 2022

Update oncoKB base URL
gongyixiao
authored
b91d957

Commits on Aug 11, 2022

added dplyr used by fun ccf_annotate_maf_legacy
asntech
committed
1780094

Commits on Aug 16, 2022

Produce adjusted and unadjusted .seg files.
Adam Price
committed
c7ce6e5

Commits on Sep 6, 2022

Merge pull request #54 from mskcc/enhancement/seg_dipLogR_adjust
price0416
authored
7f90281
Merge pull request #53 from asntech/master
price0416
authored
7d24d30
Merge pull request #49 from mskcc/Update-oncoKB-base-URL
price0416
authored
ffc34cf
Merge pull request #45 from tischfis/patch-1
price0416
authored
a0b963a
Merge pull request #38 from MajoroMask/master
price0416
authored
7d54d0f

Commits on Oct 23, 2025

Link fork history; keep MSKCC files unchanged
price0416
committed
f57b2f6

Commits on Oct 24, 2025

Custom 2n comparison branch.
price0416
committed
48cf7af