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Update Phylowgs version to 1.5.1-msk #82

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Merged
nikhil merged 3 commits into from
Aug 26, 2026
Merged

Update Phylowgs version to 1.5.1-msk #82

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0eb17e5
Update Phylowgs version to 1.5.1-msk
nikhil Aug 26, 2026
f5f23cc
Updated phylowgs version
nikhil Aug 26, 2026
cd8bd3a
Merge branch 'develop' into feature/update_phylowgs
nikhil Aug 26, 2026
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8 changes: 4 additions & 4 deletions containers/phylowgs/v1.5-msk/Dockerfile → containers/phylowgs/v1.5.1-msk/Dockerfile
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Expand Up @@ -6,14 +6,14 @@ LABEL org.opencontainers.image.vendor="MSKCC-OMICS-WORKFLOWS" \
org.opencontainers.image.created="2025-08-21T11:07:00Z" \
imageprivacy="False" \
org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.version="1.5-msk" \
org.opencontainers.image.version="1.5.1-msk" \
org.opencontainers.image.source="https://github.com/mskcc/phylowgs" \
org.opencontainers.image.url="https://github.com/mskcc-omics-workflows/containers/containers/phylowgs/" \
org.opencontainers.image.title="Phylowgs" \
org.opencontainers.image.description="Application for inferring subclonal composition and evolution from whole-genome sequencing data."

ENV DEBIAN_FRONTEND=noninteractive
ENV PHYLOWGS_TAG="v1.5-msk"
ENV PHYLOWGS_TAG="v1.5.1-msk"
ARG TARGETPLATFORM

RUN apt-get update -y \
Expand All @@ -23,12 +23,12 @@ RUN apt-get update -y \
&& curl https://bootstrap.pypa.io/pip/2.7/get-pip.py --output /tmp/get-pip.py \
&& python2 /tmp/get-pip.py \
# Install phylowgs
&& git clone --branch 1.5 https://github.com/mskcc/phylowgs /tmp/phylowgs \
&& git clone --branch 1.5.1 https://github.com/mskcc/phylowgs /tmp/phylowgs \
&& pip2 install --no-cache-dir -r /tmp/phylowgs/requirements.txt \
&& cp -r /tmp/phylowgs/ /usr/bin \
&& g++ -I/usr/bin/phylowgs -o /usr/bin/phylowgs/mh.o -O3 /usr/bin/phylowgs/mh.cpp /usr/bin/phylowgs/util.cpp -I/usr/include -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm \
# Clean up
&& rm -r /tmp/phylowgs \
&& apt-get clean \
&& apt-get purge \
&& rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
&& rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
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