Skip to content

Hotfix neoantigen-editing:1.1 -- fix PATH/exec bit for bundled scripts #77

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
nikhil merged 2 commits into from
Aug 19, 2026
Merged

Hotfix neoantigen-editing:1.1 -- fix PATH/exec bit for bundled scripts #77

Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
6e233b4
Hotfix neoantigen-editing:1.1 -- fix PATH/exec bit for bundled scripts
nikhil Aug 18, 2026
507e8af
Cleanup comments
nikhil Aug 18, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 2 additions & 0 deletions containers/neoantigen-editing/1.1/Dockerfile
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -14,6 +14,7 @@ LABEL org.opencontainers.image.vendor="MSKCC-OMICS-WORKFLOWS" \

ENV DEBIAN_FRONTEND=noninteractive
ENV NEOANTIGEN_EDITING_TAG 6877bf296ce96f357c101f91a6d8e123742eb8a6
ENV PATH="/usr/bin/NeoantigenEditing:${PATH}"

RUN apt-get update -y \
# Install packages
Expand All @@ -22,6 +23,7 @@ RUN apt-get update -y \
&& git clone https://github.com/LukszaLab/NeoantigenEditing /tmp/NeoantigenEditing \
&& git -C /tmp/NeoantigenEditing checkout ${NEOANTIGEN_EDITING_TAG} \
&& cp -r /tmp/NeoantigenEditing/ /usr/bin \
&& chmod +x /usr/bin/NeoantigenEditing/*.py \
# Clean up
&& rm -r /tmp/NeoantigenEditing \
&& apt-get clean \
Expand Down
Loading