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Filter RPCAInput #837

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Merged
TuomasBorman merged 14 commits into from
Jul 30, 2026
Merged

Filter RPCAInput #837

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51f9920
Add filterRPCAInput for RPCA inputs
sabujcb Jul 22, 2026
49ca940
Add minimal filterRPCAInput vignette
sabujcb Jul 23, 2026
eeb8d58
Export and document filterRPCAInput
sabujcb Jul 23, 2026
d8f0a10
Add filterRPCAInput to Joint-RPCA section
sabujcb Jul 27, 2026
f2088cb
Change run_pkgdown condition to trigger on push
sabujcb Jul 27, 2026
b4b51e8
simplify
TuomasBorman Jul 28, 2026
2dd8b58
styling
TuomasBorman Jul 28, 2026
e4889c3
update filtering
TuomasBorman Jul 28, 2026
e84e693
update test
TuomasBorman Jul 28, 2026
93463ee
Merge branch 'devel' into filter-rpca-input
TuomasBorman Jul 30, 2026
951b987
Merge branch 'devel' into filter-rpca-input
TuomasBorman Jul 30, 2026
e58575d
Enable alternative experiments of MAE in getJointRPCA
TuomasBorman Jul 30, 2026
457f195
Merge branch 'filter-rpca-input' of github.com:sabujcb/Joint-RPCA-R-i…
TuomasBorman Jul 30, 2026
c3b06f9
up
TuomasBorman Jul 30, 2026
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4 changes: 2 additions & 2 deletions .github/workflows/rworkflows.yml
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Expand Up @@ -46,12 +46,12 @@ jobs:
run_vignettes: ${{ true }}
has_testthat: ${{ true }}
run_covr: ${{ true }}
run_pkgdown: ${{ true }}
run_pkgdown: ${{ github.event_name == 'push' }}
has_runit: ${{ false }}
has_latex: ${{ false }}
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
run_docker: ${{ false }}
DOCKER_TOKEN: ${{ secrets.DOCKER_TOKEN }}
runner_os: ${{ runner.os }}
cache_version: cache-v1
docker_registry: ghcr.io
docker_registry: ghcr.io
3 changes: 3 additions & 0 deletions NAMESPACE
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Original file line number Diff line number Diff line change
@@ -1,5 +1,7 @@
# Generated by roxygen2: do not edit by hand

S3method(filterRPCAInput,MultiAssayExperiment)
S3method(filterRPCAInput,SummarizedExperiment)
export("relabundance<-")
export(IdTaxaToDataFrame)
export(ZTransform)
Expand Down Expand Up @@ -57,6 +59,7 @@ export(estimateDominance)
export(estimateEvenness)
export(estimateFaith)
export(estimateRichness)
export(filterRPCAInput)
export(full_join)
export(getAbundanceClass)
export(getAbundant)
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