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Add tree visualization reference #889

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9 changes: 9 additions & 0 deletions inst/assets/bibliography.bib
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Expand Up @@ -3083,3 +3083,12 @@ @article{Medearis2026
urldate = {2026-01-12},
year = {2026}
}

@Book{Yu2023,
author = {Guangchuang Yu},
title = {Data Integration, Manipulation and Visualization of
Phylogenetic Trees},
publisher = {Chapman and Hall/CRC},
year = {2023},
url = {https://yulab-smu.top/treedata-book/}
}
5 changes: 4 additions & 1 deletion inst/pages/taxonomy.qmd
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Expand Up @@ -279,7 +279,10 @@ setTaxonomyRanks(ranks)
## Visualizing phylogeny

The `plotRowTree()` function from the `r BiocStyle::Biocpkg("miaViz")` package
provides a convenient way to visualize the phylogeny.
provides a convenient way to visualize the phylogeny. For more advanced
tree-data integration and visualization techniques, see Yu's book
[*Data Integration, Manipulation and Visualization of Phylogenetic Trees*](https://yulab-smu.top/treedata-book/),
especially the chapter on [plotting trees with data](https://yulab-smu.top/treedata-book/chapter7.html) [@Yu2023].

```{r}
#| label: plot_phylogeny1
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