Toy simulations and analyses of heritability and genetic differences
neffective_10k.R : Simulating populations a with fixed effective population size.
drift_variance.R : Visualizing variance due to drift and sampling.
allele_age.R : Visualizing the expected age of an allele.
selection_trajectory.R : Visualizing the trajectory of an allele under selection.
p_fixation.R : Visualizing the probability of fixation relative to neutral drift.
frequency_simulation.R : Visualizing the drift of alleles with/without selection.
selection_power.R : Visualizing the power to distinguish selection from drift.
polygenic_selection_simulation.R : Visualizing the allele frequency spectrum change over generations of selection.
fitness_environment.R : Visualizing a shift in the fitness optimum or environment under stabilizing selection.
breeders_eqn.R : Visualizing the response to long term selection and the Breeder's Equation.
fst_nei_hudson.R : Visualizing Nei's and Hudson's Fst.
fst_drift_migration.R : Visualizing equivalent Fst under different drift/migration parameters.
fst_ascertainment.R : Simulating Fst estimates under different SNP ascertainments.
fst_bounds.R : Sampling and visualizing the bound on Fst estimates
fst_qst.R : Visualizing the relationship between Fst and heritable trait differences
fst_auc_multisnp.R : Quantifying the predictive utility of genetic ancestry.
pca_vs_snps.R : Visualizing how PCA identifies two populations as more SNP data is added.
fst_phase_shift.R : Visualizing PCA sensitivity and the expected PBB threshold.
family_pca.R : Visualizing PCA run in data with family structure.
lda_structure.R : LDA/STRUCTURE model-based clustering and biases due to sampling.