eccenca · muddymudskipper · Jul 8, 2026 · Jul 8, 2026 · Jul 8, 2026 · Jul 17, 2026
diff --git a/.idea/cmem-plugin-reason.iml b/.idea/cmem-plugin-reason.iml
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -7,10 +7,15 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/) and this p
 
 ## [Unreleased]
 
-TODO: add at least one Added, Changed, Deprecated, Removed, Fixed or Security section
+### Fixed
 
+- Fix robot.jar vulnerabilities CVE-2026-54515, CVE-2026-9828.
 
-## [2.2.5] 2026-03-01
+### Changed
+
+- Remove dependency inflection
+
+## [2.2.6] 2026-06-29
 
 ### Fixed
 

diff --git a/cmem_plugin_reason/doc/validate_doc.md b/cmem_plugin_reason/doc/validate_doc.md
@@ -22,6 +22,10 @@ The following reasoner options are supported:
 - [Structural Reasoner](http://owlcs.github.io/owlapi/apidocs_4/org/semanticweb/owlapi/reasoner/structural/StructuralReasoner.html) (structural)
 - [Whelk](https://github.com/balhoff/whelk) (whelk)
 
+⚠️ Only **HermiT** and **JFact** are recommended for consistency validation, since they are the
+only reasoner options here that are complete OWL DL reasoners capable of generating explanations.
+The remaining options are kept for backwards compatibility.
+
 ### Produce output graph
 
 If enabled, an explanation graph is created.

diff --git a/cmem_plugin_reason/plugin_reason.py b/cmem_plugin_reason/plugin_reason.py
@@ -1,5 +1,6 @@
 """Reasoning workflow plugin module"""
 
+import re
 from collections import OrderedDict
 from collections.abc import Sequence
 from pathlib import Path
@@ -25,7 +26,7 @@
     MAX_RAM_PERCENTAGE_DEFAULT,
     MAX_RAM_PERCENTAGE_PARAMETER,
     ONTOLOGY_GRAPH_IRI_PARAMETER,
-    REASONER_PARAMETER,
+    REASON_REASONER_PARAMETER,
     REASONERS,
     VALIDATE_PROFILES_PARAMETER,
     cancel_workflow,
@@ -152,7 +153,7 @@
         IGNORE_MISSING_IMPORTS_PARAMETER,
         ONTOLOGY_GRAPH_IRI_PARAMETER,
         VALIDATE_PROFILES_PARAMETER,
-        REASONER_PARAMETER,
+        REASON_REASONER_PARAMETER,
         MAX_RAM_PERCENTAGE_PARAMETER,
         PluginParameter(
             param_type=GraphParameterType(
@@ -390,6 +391,14 @@ def __init__(  # noqa: PLR0913 C901
         self.input_ports = FixedNumberOfInputs([])
         self.output_port = None
 
+    @staticmethod
+    def underscore(word: str) -> str:
+        """Make an underscored, lowercase form from the expression in the string"""
+        word = re.sub(r"([A-Z]+)([A-Z][a-z])", r"\1_\2", word)
+        word = re.sub(r"([a-z\d])([A-Z])", r"\1_\2", word)
+        word = word.replace("-", "_")
+        return word.lower()
+
     def get_graphs(self, graphs: dict, missing: list) -> None:
         """Get graphs from CMEM"""
         for iri, filename in graphs.items():

diff --git a/cmem_plugin_reason/plugin_validate.py b/cmem_plugin_reason/plugin_validate.py
@@ -25,9 +25,9 @@
     MAX_RAM_PERCENTAGE_DEFAULT,
     MAX_RAM_PERCENTAGE_PARAMETER,
     ONTOLOGY_GRAPH_IRI_PARAMETER,
-    REASONER_PARAMETER,
     REASONERS,
     VALIDATE_PROFILES_PARAMETER,
+    VALIDATE_REASONER_PARAMETER,
     cancel_workflow,
     create_xml_catalog_file,
     get_file_with_datetime,
@@ -53,7 +53,7 @@
         ONTOLOGY_GRAPH_IRI_PARAMETER,
         MAX_RAM_PERCENTAGE_PARAMETER,
         VALIDATE_PROFILES_PARAMETER,
-        REASONER_PARAMETER,
+        VALIDATE_REASONER_PARAMETER,
         PluginParameter(
             param_type=StringParameterType(),
             name="md_filename",

diff --git a/cmem_plugin_reason/robot.jar b/cmem_plugin_reason/robot.jar
diff --git a/cmem_plugin_reason/utils.py b/cmem_plugin_reason/utils.py
@@ -42,13 +42,23 @@
 MAX_RAM_PERCENTAGE_DEFAULT = 20
 URN_PATTERN = re.compile(r"^urn:[a-zA-Z0-9][a-zA-Z0-9-]*(:.+)?$", re.IGNORECASE)
 
-REASONER_PARAMETER = PluginParameter(
+REASON_REASONER_PARAMETER = PluginParameter(
     param_type=ChoiceParameterType(REASONERS),
     name="reasoner",
     label="Reasoner",
     description="Reasoner option.",
 )
 
+VALIDATE_REASONER_PARAMETER = PluginParameter(
+    param_type=ChoiceParameterType(REASONERS),
+    name="reasoner",
+    label="Reasoner",
+    description="""Reasoner option. Only "HermiT" and "JFact" are recommended for consistency
+    validation, since they are the only reasoners offered here that are complete OWL DL reasoners
+    capable of generating explanations. The remaining options are kept for backwards
+    compatibility.""",
+)
+
 ONTOLOGY_GRAPH_IRI_PARAMETER = PluginParameter(
     param_type=GraphParameterType(classes=["http://www.w3.org/2002/07/owl#Ontology"]),
     name="ontology_graph_iri",

diff --git a/poetry.lock b/poetry.lock
diff --git a/tests/test_reason.py b/tests/test_reason.py
@@ -67,7 +67,7 @@ def setup() -> Generator[None, Any]:
     delete(REASON_RESULT_GRAPH_IRI)
 
 
-@pytest.mark.parametrize("reasoner_parameter", list(REASONERS.keys()))
+@pytest.mark.parametrize("reasoner_parameter", REASONERS)
 def test_reason(setup: None, reasoner_parameter: str) -> None:  # noqa: ARG001
     """Test reasoning"""
     ReasonPlugin(

diff --git a/tests/test_validate.py b/tests/test_validate.py
@@ -72,7 +72,7 @@ def setup() -> Generator[None, Any]:
     delete_project(PROJECT_ID)
 
 
-@pytest.mark.parametrize("reasoner_parameter", list(REASONERS.keys()))
+@pytest.mark.parametrize("reasoner_parameter", REASONERS)
 def test_validate(setup: None, reasoner_parameter: str) -> None:  # noqa: ARG001
     """Test Validate"""
     result = ValidatePlugin(