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Update biobase to 0.1.17 - #41

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nsheff merged 1 commit into
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biobase-update-0.1.17
Aug 27, 2026
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nsheff merged 1 commit into
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biobase-update-0.1.17

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@claude

@claude claude Bot commented Aug 27, 2026

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Summary

Scheduled biobase update check. Two container images had newer tags available on quay.io/biocontainers:

Tool Old tag New tag
blast 2.17.0--h66d330f_0 2.17.0--hb02a186_1
salmon 2.5.1--hfa8f182_0 2.6.0--hfa8f182_0

All other images in bulker/biobase_0.1.16.yaml were checked and are already at their latest available tag.

Skipped (per project convention): pigz (custom image), refgenie (pinned to latest).

Investigated but not updated (false positives from naive tag comparison, verified manually):

  • sra-tools — quay.io lists a 3.4.1--2_linux_64 tag, but this is a differently-packaged static-binary artifact, not a newer conda build of the same version already in use (3.4.1--h4304569_1).
  • seqtk — quay.io's alphabetically-last tag is r93--0, a legacy pre-semver naming scheme predating the current 1.5--h577a1d6_1, which is actually the latest real release.

Test plan

  • python validate_manifests.py --check-tags passes with 0 errors (284/284 image tags verified)
  • Diffed biobase_0.1.16.yaml vs biobase_0.1.17.yaml to confirm only version, blast, and salmon fields changed
  • Verified bulker/biobase.yaml symlink points to the new versioned file

Updated images:
- blast: 2.17.0--h66d330f_0 -> 2.17.0--hb02a186_1
- salmon: 2.5.1--hfa8f182_0 -> 2.6.0--hfa8f182_0
@nsheff
nsheff merged commit bcbca6d into master Aug 27, 2026
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@nsheff
nsheff deleted the biobase-update-0.1.17 branch August 27, 2026 01:39
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