Repository navigation
Update biobase to 0.1.17 - #41
Merged
Merged
Conversation
Updated images: - blast: 2.17.0--h66d330f_0 -> 2.17.0--hb02a186_1 - salmon: 2.5.1--hfa8f182_0 -> 2.6.0--hfa8f182_0
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Summary
Scheduled biobase update check. Two container images had newer tags available on quay.io/biocontainers:
2.17.0--h66d330f_02.17.0--hb02a186_12.5.1--hfa8f182_02.6.0--hfa8f182_0All other images in
bulker/biobase_0.1.16.yamlwere checked and are already at their latest available tag.Skipped (per project convention):
pigz(custom image),refgenie(pinned tolatest).Investigated but not updated (false positives from naive tag comparison, verified manually):
sra-tools— quay.io lists a3.4.1--2_linux_64tag, but this is a differently-packaged static-binary artifact, not a newer conda build of the same version already in use (3.4.1--h4304569_1).seqtk— quay.io's alphabetically-last tag isr93--0, a legacy pre-semver naming scheme predating the current1.5--h577a1d6_1, which is actually the latest real release.Test plan
python validate_manifests.py --check-tagspasses with 0 errors (284/284 image tags verified)biobase_0.1.16.yamlvsbiobase_0.1.17.yamlto confirm onlyversion,blast, andsalmonfields changedbulker/biobase.yamlsymlink points to the new versioned file