Extract R analysis into modular backend abstraction - #153

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sanghoonio wants to merge 16 commits into

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modular-backend-r

Commits on Mar 27, 2026

Extract R analysis into modular backend abstraction

sanghoonio
and
claude
committed
00b833c

Commits on Apr 3, 2026

Use constants for backend names, fix black formatting

sanghoonio
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claude
committed
f2fc5c5
Add gtars genomicdist backend alongside R backend

sanghoonio
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claude
committed
1c32281
Prefer seqcol API over FASTA pull for chrom.sizes

sanghoonio
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claude
committed
9e7f90d

Commits on Apr 4, 2026

Fix partition percentage scale to match R (0-1, not 0-100)

sanghoonio
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claude
committed
30f08bc

Commits on Apr 5, 2026

Compute median_neighbor_distance scalar in gtars backend

sanghoonio
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claude
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a577e87
Apply black formatting to gtars_backend.py

sanghoonio
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claude
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a1ef7e4
Add GtarsPyStatBackend for side-by-side performance comparison

sanghoonio
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claude
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2c09cae
Pass StatBackend instance through orchestration, drop r_service param

sanghoonio
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claude
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bda89cb
Merge modular-backend-r: StatBackend instance through orchestration
sanghoonio
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9d8d9e9
Make GtarsStatBackend pure CLI subprocess (no Python binding calls)

sanghoonio
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claude
committed
1615e8e

Commits on Apr 6, 2026

Remove gtars-py backend, add .fab auto-compilation, fix backend wiring

sanghoonio
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claude
committed
3383efe
Apply black formatting to backends/__init__.py and ref_utils.py

sanghoonio
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claude
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79ecfba
Fix proportional region distribution bins using chrom_sizes

sanghoonio
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claude
committed
49f21c6

Commits on Aug 31, 2026

Merge pull request #155 from databio/modular-backend-gtars
khoroshevskyi
authored
a7679c2

Commits on Sep 3, 2026

Stop deriving median_neighbor_distance

sanghoonio
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claude
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a16b113