[khoroshevskyi]

Changes:

• Converted many docstrings from reST-style :param/:return: to Google-style Args/Returns.

TODO:

• Version of pepdbagent updated in __version__.py file
• Changelog updated

[Copilot]

Pull request overview

Updates documentation across the bbconf Python package to use Google-style docstrings as part of the “Modernize - phase 4” effort, plus a small Pydantic default fix and a new CI lint/format workflow.

Changes:

• Converted many docstrings from reST-style :param/:return: to Google-style Args/Returns.
• Fixed StandardMeta.global_*_id defaults to None (instead of an incorrect empty-string default).
• Added a GitHub Actions workflow to run ruff check and ruff format --check.

Reviewed changes

Copilot reviewed 11 out of 12 changed files in this pull request and generated 12 comments.

Show a summary per file

File	Description
bbconf/modules/objects.py	Google-style docstrings for object URI/DRS helpers.
bbconf/modules/bedsets.py	Google-style docstrings for bedset operations.
bbconf/modules/bedfiles.py	Google-style docstrings for bedfile operations; minor doc wording tweaks.
bbconf/models/bed_models.py	Fixes StandardMeta defaults for global_sample_id/global_experiment_id.
bbconf/helpers.py	Google-style docstrings for config/path helpers.
bbconf/exceptions.py	Reformats exception class docstrings.
bbconf/db_utils.py	Updates docstrings/strings in DB utilities.
bbconf/config_parser/utils.py	Google-style docstring for config analyzer.
bbconf/config_parser/models.py	Docstring updates for config model helpers.
bbconf/config_parser/bedbaseconfig.py	Docstring updates for config initialization helpers.
bbconf/bbagent.py	Docstring updates for main agent API.
.github/workflows/format.yml	Adds CI job to enforce Ruff linting and formatting.

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