Collation in kive#1565

Draft

Donaim wants to merge 38 commits into

collation-in-kive

Commits on May 7, 2026

Commits on May 8, 2026

Commits on May 11, 2026

Refactor KiveWatcher to improve folder state management and enhance error handling; add tests for missing required columns in metadata and collation failure scenarios.
Donaim
committed
Refactor argument parsing in kive_collate.py to remove optional flag for run_outputs; update related tests for consistency
Donaim
committed
Refactor argument parsing in kive_collate.py to accept command-line arguments directly; enhance error handling for argument parsing
Donaim
committed
Refactor main function in kive_collate.py to improve variable handling; enhance readability by assigning arguments to local variables
Donaim
committed
Enhance logging in kive_collate.py for better traceability; add debug and info statements to key functions and configure logging based on verbosity flags.
Donaim
committed
Refactor logging configuration in kive_collate.py; remove debug2 verbosity level and update argument parsing for clearer verbosity options.
Donaim
committed
Add debug flag to collation run command in Singularity definition
Donaim
committed
Add debug logging at the start of the main function in kive_collate.py
Donaim
committed
Set logging level to DEBUG in kive_collate.py for enhanced log visibility
Donaim
committed
Revert "Refactor argument parsing in kive_collate.py to remove optional flag for run_outputs; update related tests for consistency"
Donaim
committed
Remove assertions for deprecated debug2 flag in argument parsing tests
Donaim
committed
Refactor argument parsing in kive_collate.py to use --inputs flag; update related tests and Singularity definition for consistency
Donaim
committed
Refactor argument parsing in kive_collate.py to use repeatable --inputs flag; update related tests for consistency
Donaim
committed
Update argument parsing in kive_collate.py to allow multiple input paths with --inputs flag
Donaim
committed
Update argument parsing help text in kive_collate.py for clarity; adjust test cases in test_kive_collate.py to reflect changes
Donaim
committed
Remove DEBUG logging and replace with print statement in kive_collate.py main function
Donaim
committed
Update --inputs argument in parse_args to remove required flag in kive_collate.py
Donaim
committed

Commits on May 12, 2026