chore: bump scDataLoader floor to 2.1.3#53
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Picks up: - scipy>=1.15 compat in additional_postprocess (jkobject/scDataLoader#32, #34) - compound ontology id handling in translate() (jkobject/scDataLoader#33, complements #51 here) - lamin init --modules bionty docs (lamindb 2.1.x)
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Pull request overview
Updates scPRINT’s dependency floor to pick up scDataLoader/scdataloader v2.1.3, aligning the project with upstream fixes (SciPy>=1.15 compatibility and improved ontology ID translation behavior).
Changes:
- Bump
scDataLoaderminimum version from>=2.1.2to>=2.1.3.
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| "torchdata>=0.7.1", | ||
| "lamindb==2.1.1", | ||
| "bionty>=1.0.0", | ||
| "scDataLoader>=2.1.2", | ||
| "scDataLoader>=2.1.3", | ||
| "simpler_flash==1.0.7", |
Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
## main #53 +/- ##
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Coverage 41.11% 41.11%
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Files 27 27
Lines 2875 2875
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Hits 1182 1182
Misses 1693 1693 ☔ View full report in Codecov by Sentry. 🚀 New features to boost your workflow:
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Picks up the freshly released scdataloader 2.1.3 (https://pypi.org/project/scdataloader/2.1.3/):
additional_postprocess(scDataLoader pre-processing for scprint-2 pretraining jkobject/scDataLoader#32, Docker image throws django error #34)translate()(fix: handle compound ontology ids in translate() jkobject/scDataLoader#33) — complements the in-tree fix: don't abort make_adata when ontology translation fails #51 defense-in-depth inmake_adatalamin init --modules biontydocs (lamindb 2.1.x)No scPRINT-side code changes needed.