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Update seqreports: filter out empty fastqs - #24

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matrulda merged 2 commits into
arteria-project:masterfrom
matrulda:DATAOPS-1484_skip_empty_fastqs
Mar 5, 2026
Merged

Update seqreports: filter out empty fastqs#24
matrulda merged 2 commits into
arteria-project:masterfrom
matrulda:DATAOPS-1484_skip_empty_fastqs

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@matrulda

@matrulda matrulda commented Feb 19, 2026

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Description
Update seqreports to a version that filters out empty fastqs.

Risk analysis
See Molmed/seqreports#71.

Validation procedure
See Molmed/seqreports#71.
This change has been applied as an hotfix in /vulpes/ngi/staging/260122.526aeb2-bimonthly/sw/arteria/arteria-sequencing-report-ws/seqreports/main.nf

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matrulda requested a review from nkongenelly February 19, 2026 06:52

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Looks good

@matrulda

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Updated seqreports again with the updates threshold, hopefully the last fix we need 🤞

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matrulda requested a review from nkongenelly February 23, 2026 07:03

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Looks good.

@nkongenelly nkongenelly left a comment

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Looks good.

@matrulda
matrulda merged commit 957decd into arteria-project:master Mar 5, 2026
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2 participants