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Each analysis has its own folder along with README.md that includes env needed, input/ output data and general description.

  • moi - Calculation of Fws from filtered merged VCF
  • selection - Calculation of selection metrics with rehh package from binary matrix based on Ernest's scripts
  • ibd - Calculation of indentity by descent with hmmIBD from binary matrix based on Ernest's scripts

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PopGen analyses for malaria

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