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Rejection pass in random_constrained_tree() is wasted work when it cannot land
sev:lowP3: robustness / polishP3: robustness / polishtaskPlanned work migrated from the retired to-do.mdPlanned work migrated from the retired to-do.mdStatus: Open.#128 In agent-issues/TreeSearch;A15-02: SuccessiveApproximations() runs without the sectorial/fuse/pool escape machinery and its documentation never says so
area:15Red-team focus area 15Red-team focus area 15red-teamFiled by the /red-team rotationFiled by the /red-team rotationsev:lowP3: robustness / polishP3: robustness / polishStatus: Open.#126 In agent-issues/TreeSearch;A15-01: the documented
edgeToBreak = -1"enumerate all one-step trees" contract is broken at 4 of 6 exported entry points, one of them silentlyarea:15Red-team focus area 15Red-team focus area 15red-teamFiled by the /red-team rotationFiled by the /red-team rotationsev:medP2: wrong on edge input / search qualityP2: wrong on edge input / search qualityStatus: Open.#125 In agent-issues/TreeSearch;UBSan: memcpy with null pointers in TbrSnapshot save/restore (ts_tbr.cpp)
in-progressBeing fixed; claiming comment names the branchBeing fixed; claiming comment names the branchsev:lowP3: robustness / polishP3: robustness / polishStatus: Open.#124 In agent-issues/TreeSearch;random_constrained_tree() samples only the strict-reading corner of the legal topologies
in-progressBeing fixed; claiming comment names the branchBeing fixed; claiming comment names the branchsev:medP2: wrong on edge input / search qualityP2: wrong on edge input / search qualityStatus: Open.#121 In agent-issues/TreeSearch;A14-37: WhenFirstHit.R: unanchored regex produces spurious stage labels when a name merely contains the pattern
area:14Red-team focus area 14Red-team focus area 14in-progressBeing fixed; claiming comment names the branchBeing fixed; claiming comment names the branchred-teamFiled by the /red-team rotationFiled by the /red-team rotationsev:lowP3: robustness / polishP3: robustness / polishStatus: Open.#120 In agent-issues/TreeSearch;A14-36: Bootstrap.R: sample() length-1 vector trap (base R sample() gotcha, currently unreachable with normal weights)
area:14Red-team focus area 14Red-team focus area 14in-progressBeing fixed; claiming comment names the branchBeing fixed; claiming comment names the branchred-teamFiled by the /red-team rotationFiled by the /red-team rotationsev:lowP3: robustness / polishP3: robustness / polishStatus: Open.#119 In agent-issues/TreeSearch;A14-34: ParsSim.R: bitwShiftL overflow silently corrupts the Fitch score at >=31 states
area:14Red-team focus area 14Red-team focus area 14in-progressBeing fixed; claiming comment names the branchBeing fixed; claiming comment names the branchred-teamFiled by the /red-team rotationFiled by the /red-team rotationsev:lowP3: robustness / polishP3: robustness / polishStatus: Open.#118 In agent-issues/TreeSearch;A14-32: TaxonInfluence(): dwMean assumes an undocumented TreeDist matrix orientation that varies by call path (latent, not currently firing)
area:14Red-team focus area 14Red-team focus area 14in-progressBeing fixed; claiming comment names the branchBeing fixed; claiming comment names the branchred-teamFiled by the /red-team rotationFiled by the /red-team rotationsev:lowP3: robustness / polishP3: robustness / polishStatus: Open.#117 In agent-issues/TreeSearch;A14-31: WideSample.R: FarFirst() called with inconsistent argument order at two call sites
area:14Red-team focus area 14Red-team focus area 14in-progressBeing fixed; claiming comment names the branchBeing fixed; claiming comment names the branchred-teamFiled by the /red-team rotationFiled by the /red-team rotationsev:lowP3: robustness / polishP3: robustness / polishStatus: Open.#116 In agent-issues/TreeSearch;A14-30: .SubsetMultiPhylo() copies per-tree attributes unsubsetted, so they describe the input not the returned subset
area:14Red-team focus area 14Red-team focus area 14in-progressBeing fixed; claiming comment names the branchBeing fixed; claiming comment names the branchred-teamFiled by the /red-team rotationFiled by the /red-team rotationsev:lowP3: robustness / polishP3: robustness / polishStatus: Open.#115 In agent-issues/TreeSearch;A14-29: WideSample(): omits the sort() its own source comment says it performs
area:14Red-team focus area 14Red-team focus area 14in-progressBeing fixed; claiming comment names the branchBeing fixed; claiming comment names the branchred-teamFiled by the /red-team rotationFiled by the /red-team rotationsev:lowP3: robustness / polishP3: robustness / polishStatus: Open.#114 In agent-issues/TreeSearch;