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Basic Cleanup Missing from DeDriftAndResamplePipeline #330

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Basic Cleanup Missing from DeDriftAndResamplePipeline#330
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mmilch01

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@glasserm
glasserm
opened on Mar 16, 2025

HCPpipelines/DeDriftAndResample/DeDriftAndResamplePipeline.sh

Line 493 in cf71031

# Resample (and resmooth) TS from Native

This pipeline needs the same thing as fMRISurface:

HCPpipelines/fMRISurface/scripts/CreateDenseTimeseries.sh

Lines 93 to 96 in cf71031

#Basic Cleanup
rm "$NameOffMRI"_AtlasSubcortical_s"$SmoothingFWHM".nii.gz
rm "$NameOffMRI"_s"$SmoothingFWHM".atlasroi.L."$LowResMesh"k_fs_LR.func.gii
rm "$NameOffMRI"_s"$SmoothingFWHM".atlasroi.R."$LowResMesh"k_fs_LR.func.gii

HCPpipelines/fMRISurface/scripts/SurfaceSmoothing.sh

Lines 66 to 67 in cf71031

#Basic Cleanup
rm "$NameOffMRI"."$Hemisphere".atlasroi."$LowResMesh"k_fs_LR.func.gii

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  1. glasserm
    assigned
    mmilch01
    on Mar 16, 2025

  2. glasserm commented on Mar 16, 2025

    @glasserm
    glasserm
    on Mar 16, 2025
    ContributorAuthor

    Misha, please address this issue when you implement longitudinal MSMAll.

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