Fix bugs in the Tree Recruitment Scheme with seedling dynamics#1572

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r-ward wants to merge 19 commits into

r-ward:trs_debug

Commits on Oct 27, 2025

Fix PAR fraction to use relative area in SeedlingParPatch
Rachel Ward
committed
Skip first-day update of seedling layer smp and moisture deficit days (mdd).
Rachel Ward
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fix typo
Rachel Ward
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Fix initial value for sdlng_mort_par, change from temp_init_veg to init_seedling_par
Rachel Ward
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testing update to seedling layer smp
Rachel Ward
committed

Commits on Oct 28, 2025

Fix model day check (must bee > 1.023 to skip 1st model day)
Rachel Ward
committed

Commits on Oct 29, 2025

Add debugging blocks
Rachel Ward
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Fix typo
Rachel Ward
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Fix typo
Rachel Ward
committed

Commits on Nov 3, 2025

Add print statements for debugging: where and how does seed_germ go negative? Check by printing from SeedDecay, SeedGerm, PreDisturbanceIntegrateLiter, and recruitment subroutines
Rachel Ward
committed

Commits on Nov 13, 2025

Update seedling layer smp and mdd running means only after first model day to avoid host model spike in smp at initialization
Rachel Ward
committed

Commits on Nov 16, 2025

Fix negative seed pool issue by capping germination flux. Prevent seed_germ_in from exceeding available seed after accounting for inputs and decay
Rachel Ward
committed

Commits on Dec 10, 2025

remove debug messages for seed germ diagnostics
Rachel Ward
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Cap seedling h2o mort rate and seed decay rate at 1, add debugging
Rachel Ward
committed

Commits on Apr 27, 2026

Remove debug print statements from TRS seedling layer subroutines
r-ward
committed

Commits on Apr 28, 2026

Make rate capping style consistent in SeedGermination
r-ward
committed

Commits on May 22, 2026