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312 changes: 185 additions & 127 deletions _quarto.yml
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ execute:

website:
page-navigation: true
title: "EarthData Cloud Cookbook"
title: "Earthdata Cloud Cookbook"
site-url: https://nasa-openscapes.github.io/earthdata-cloud-cookbook
repo-url: https://github.com/nasa-openscapes/earthdata-cloud-cookbook
repo-actions: [edit, source, issue]
Expand Down Expand Up @@ -36,80 +36,44 @@ website:
contents:
- text: "Welcome"
href: index.qmd
- text: "When To Cloud"
href: when-to-cloud.qmd
# ============================================================
# SECTION 1: OUR COOKBOOKS (Explanation)
# ============================================================
- section: "Our Cookbooks"
href: our-cookbooks.qmd
contents:
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- text: "Ocean, climate, and surface water data tutorials from PO.DAAC"
- text: "PO.DAAC Tutorials"
href: https://podaac.github.io/tutorials/
- text: "Mission-specific tutorials for ASDC"
href: https://nasa.github.io/ASDC_Data_and_User_Services/
- text: "Tutorials from the National Snow and Ice Data Center (NSIDC)"
href: https://nsidc.github.io/NSIDC-Data-Cookbook/
- text: "Ocean Data Cookbook from OBDAAC"
- text: "ASDC Mission Tutorials"
href: https://nasa.github.io/ASDC_Data_and_User_Services/
- text: "NSIDC Data Cookbook"
href: https://nsidc.github.io/NSIDC-Data-Cookbook/
- text: "OBDAAC Ocean Data Cookbook"
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Suggested change
- text: "OBDAAC Ocean Data Cookbook"
- text: "OB.DAAC Help Hub"

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The "." is important for our DAACs branding, and the "Help Hub" is the cookbook's current title. If you just want to have "OB.DAAC Tutorials", that's okay too.

href: https://nasa.github.io/oceandata-notebooks/
- text: "Airborne Data Tutorials from ORNL DAAC"
href: https://ornldaac.github.io/airborne/
- text: "GEDI Data Tutorials from ORNL DAAC"
href: https://ornldaac.github.io/gedi_tutorials/
- text: "Glossary & Cheatsheets"
href: glossary.qmd
- text: "Cloud Environment Setup"
href: environment-setup/index.qmd
- section: "How do I..."
contents:
- section: "find data"
contents:
- text: "with Earthdata Search"
href: how-tos/find-data/earthdata_search.md
- text: "with Python"
href: how-tos/find-data/find-python.ipynb
- text: "with R"
href: how-tos/find-data/find-r.qmd
- text: "with R and STAC"
href: how-tos/find-data/CMR-STAC-Search.qmd
- section: "access data in cloud"
contents:
- text: "with Python"
href: how-tos/access-data/access-cloud-python.ipynb
# - text: "with R"
# href: how-tos/access-data/access-cloud-r.qmd
- section: "access data locally"
contents:
- text: "with Python"
href: how-tos/access-data/access-local-python.ipynb
- text: "with OPeNDAP"
href: how-tos/access-data/access-local-opendap.qmd
- text: "with command line"
href: how-tos/access-data/access-command-line.md
- text: "read data"
href: how-tos/read_data.qmd
- text: "subset data"
href: how-tos/subset.qmd
- text: "Store data in the cloud"
href: how-tos/using-s3-storage.ipynb
#- text: "reformat data files"
# href: how-tos/reformat.qmd
#- text: "reproject and regrid"
# href: how-tos/reproject_regrid.qmd
#- text: "aggregate data"
# href: how-tos/aggregate.qmd
#- text: "plot data"
# href: how-tos/plot.qmd
- section: "use APIs"
href: how-tos/use_apis.qmd
contents:
- text: "AppEEARS Cloud CSV Access "
href: external/appeears_csv_cloud_access.ipynb
- text: "parking lot"
href: how-tos/how_to_guide_parking_lot.qmd
- section: "Tutorials"
- text: "ORNL DAAC Airborne Tutorials"
href: https://ornldaac.github.io/airborne/
- text: "ORNL DAAC GEDI Tutorials"
href: https://ornldaac.github.io/gedi_tutorials/

# ============================================================
# SECTION 2: CORE CONCEPTS (conceptual, the "why")
# ============================================================
- section: "Core Concepts"
contents:
- text: "Cloud Paradigm"
href: cloud_paradigm.qmd
- text: "When To Cloud"
href: when-to-cloud.qmd

# ============================================================
# SECTION 3: TUTORIALS (Learn by doing, end-to-end)
# ============================================================
- section: "Tutorials (Learn by Doing)"
href: tutorials/index.qmd
contents:
- text: "Earthdata Cloud Clinic"
href: tutorials/Earthdata-cloud-clinic.ipynb
- text: "Multi-datasets"
- text: "Multi-datasets (Hurricanes)"
href: tutorials/Hurricanes_Wind_and_Sea_Surface_Temperature.ipynb
- text: "Sea Level Rise"
href: tutorials/Sea_Level_Rise.ipynb
Expand All @@ -119,86 +83,178 @@ website:
href: tutorials/Observing_Seasonal_Ag_Changes.ipynb
- text: "Subsetting Data with Harmony"
href: tutorials/Harmony.ipynb
- text: "OPeNDAP Access"
- text: "OPeNDAP Access"
href: tutorials/Earthdata_Cloud__Data_Access_OPeNDAP_Example.ipynb
- text: "Pygeoweaver Workflow Demo"
href: tutorials/fair-workflow-geoweaver-demo.ipynb
- text: "MATLAB Access NetCDF"
href: tutorials/matlab.qmd
- section: "Workshops & Hackathons"
href: workshops/index.qmd
contents:
- text: "Workshop Setup"
href: workshops/setup.md
- section: "Access & Administration"
href: access-admin/index.qmd
contents:
- text: "2i2c Hub access"
href: access-admin/add-folks-to-2i2c-github-teams.qmd
- text: "Data storage"
href: access-admin/data-storage.qmd
- text: "Leading workshops"
href: access-admin/leading-workshops.qmd
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- section: "In Development"
href: in-development/index.qmd
contents:
- text: "Search & Download NSIDC Cloud"
href: examples/NSIDC/ICESat2-CMR-OnPrem-vs-Cloud.ipynb
- text: "Access NSIDC Cloud w/ CMR"
href: examples/NSIDC/ICESat2-CMR-AWS-S3.ipynb
- text: "ICESat-2 Visualization"
href: tutorials/make_atl03_figure.ipynb
- text: "Data Stories Template"
href: tutorials/Data_stories_template.ipynb
# - section: "External Tutorials"
# contents:
- text: "NASA Earthdata Authentication"
href: external/nasa_earthdata_authentication.ipynb
- text: "CMR Data Discovery"
href: external/data_discovery_cmr.ipynb
- text: "CMR-STAC API Discovery"
href: external/data_discovery_cmr-stac_api.ipynb
- text: "Harmony Subsetting"
href: external/harmony_subsetting.ipynb
- text: "Direct S3 Access Patterns"
href: external/data_access_direct_S3.ipynb
- text: "On-Prem vs Cloud Workflows"
href: external/on-prem_cloud.ipynb
- text: "Zarr-EOSDIS-Store"
href: external/zarr-eosdis-store.ipynb
- text: "COF Zarr Reformat"
href: external/cof-zarr-reformat.ipynb
- text: "Xarray Fundamentals"
href: external/xarray.ipynb
- text: "Sentinel-6 OPeNDAP & Gridding"
href: external/sentinel-6_opendap_access_gridding.ipynb
# - section: "Examples by Data Provider"
# href: examples/index.qmd
# contents:
- text: "Direct Access & Harmony Workflow"
href: examples/Transform-workflow.ipynb
- text: "Search & Access USGS Landsat Cloud"
href: examples/USGS_Landsat/Landsat_C2_Search_Access.ipynb
- text: "Direct S3 Data Access: NetCDF - Daymet v4 Daily TMAX Example"
href: examples/ORNL/Data_Access__Direct_S3_Access__ORNL_DAYMET.ipynb
- text: "Access ECCO data via Harmony & the Zarr reformatter service"
href: external/cof-zarr-reformat.ipynb
- text: "zarr-eosdis-store example"
href: external/zarr-eosdis-store.ipynb
- section: "Example Workflows"
href: examples/index.qmd
contents:
- text: "GES DISC - MERRA2"
- section: "GES DISC"
contents:
- text: "MERRA2 with Kerchunk"
href: examples/GESDISC/GESDISC_MERRA2_tavg1_2d_flx_Nx__Kerchunk.ipynb
- text: "LP DAAC ECOSTRESS"
- section: "LP DAAC"
contents:
- text: "HLS Point Buffer Search & Access"
href: examples/LPDAAC/Find_and_Access_HLS_PointBuffer.ipynb
- text: "ECOSTRESS with Kerchunk"
href: examples/LPDAAC/LPDAAC_ECOSTRESS_LSTE__Kerchunk.ipynb
- text: "PO.DAAC ECCO SSH"
- section: "NSIDC"
contents:
- text: "ICESat-2 OnPrem vs Cloud"
href: examples/NSIDC/ICESat2-CMR-OnPrem-vs-Cloud.ipynb
- text: "ICESat-2 CMR & AWS S3"
href: examples/NSIDC/ICESat2-CMR-AWS-S3.ipynb
- section: "ORNL DAAC"
contents:
- text: "DAYMET Direct S3 Access"
href: examples/ORNL/Data_Access__Direct_S3_Access__ORNL_DAYMET.ipynb
- text: "DAYMET with Kerchunk"
href: examples/ORNL/ORNL_DAYMET__Kerchunk.ipynb
- section: "PO.DAAC"
contents:
- text: "ECCO SSH with Kerchunk"
href: examples/PODAAC/PODAAC_ECCO_SSH__Kerchunk.ipynb
- text: "`earthdata`: Python-R Handoff"
href: in-development/earthdata-python-r-handoff.qmd
- section: "Contributing"
href: contributing/index.qmd
- section: "USGS"
contents:
- text: "Landsat C2 Search & Access"
href: examples/USGS_Landsat/Landsat_C2_Search_Access.ipynb

# ============================================================
# SECTION 4: HOW-TO GUIDES (goal-oriented, assumes contex)
# ============================================================
- section: "How-To Guides (goal-oriented, assumes context)"
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Suggested change
- section: "How-To Guides (goal-oriented, assumes context)"
- section: "How-To Guides (Do a Task)"

Noted in May 7 co-working notes.

contents:
- text: "Calendaring and Project Management"
href: contributing/calendar-project-management.qmd
- text: "Onboarding Mentors"
href: contributing/onboarding.qmd
- text: "Setup"
href: contributing/setup.qmd
- text: "Workflows"
href: contributing/workflow.qmd
- text: "Quarto Tutorial"
href: contributing/quarto-website-tutorial.md
- text: "Troubleshooting"
href: contributing/troubleshooting.md
- section: "Templates"
- section: "Find Data"
contents:
- text: "Python Jupyter Notebook Template"
href: contributing/templates/notebook-template-python-jupyter.ipynb
- text: "Python Quarto Template"
href: contributing/templates/notebook-template-python-quarto.qmd
- text: "R Quarto Template"
href: contributing/templates/notebook-template-r-quarto.qmd
- section: "Appendix"
- text: "with Earthdata Search"
href: how-tos/find-data/earthdata_search.md
- text: "with Python"
href: how-tos/find-data/find-python.ipynb
- text: "with R"
href: how-tos/find-data/find-r.qmd
- text: "with R and STAC"
href: how-tos/find-data/CMR-STAC-Search.qmd
- text: "Programmatic Discovery"
href: how-tos/find-data/programmatic.qmd
- section: "Access Data in Cloud"
contents:
- text: "with Python"
href: how-tos/access-data/access-cloud-python.ipynb
- section: "Access Data Locally"
contents:
- text: "with Python"
href: how-tos/access-data/access-local-python.ipynb
- text: "with OPeNDAP"
href: how-tos/access-data/access-local-opendap.qmd
- text: "with Command Line"
href: how-tos/access-data/access-command-line.md
- section: "Work with Data"
contents:
- text: "Read Data"
href: how-tos/read_data.qmd
- text: "Subset Data"
href: how-tos/subset.qmd
- text: "Store Data in S3"
href: how-tos/using-s3-storage.ipynb
# - text: "Reformat Data Files"
# href: how-tos/reformat.qmd
# - text: "Reproject and Regrid"
# href: how-tos/reproject_regrid.qmd
# - text: "Aggregate Data"
# href: how-tos/aggregate.qmd
# - text: "Plot Data"
# href: how-tos/plot.qmd
- section: "Use APIs"
href: how-tos/use_apis.qmd
contents:
- text: "AppEEARS Cloud CSV Access"
href: external/appeears_csv_cloud_access.ipynb
- text: "Open Science Tutorial"
href: how-tos/Earthdata_Cloud__Open-Science-Tutorial.ipynb
- text: "Parking Lot"
href: how-tos/how_to_guide_parking_lot.qmd

# ============================================================
# SECTION 5: REFERENCE
# ============================================================
- section: "Reference"
href: appendix/index.md
contents:
- text: "Glossary & Cheatsheets"
href: glossary.qmd
- text: "Authentication"
href: appendix/authentication.qmd


# ============================================================
# SECTION 7: COMMUNITY & RESOURCES
# ============================================================
- section: "Community & Resources"
contents:
- section: "Contributing"
href: contributing/index.qmd
contents:
- text: "Calendaring and Project Management"
href: contributing/calendar-project-management.qmd
- text: "Onboarding Mentors"
href: contributing/onboarding.qmd
- text: "Setup"
href: contributing/setup.qmd
- text: "Workflows"
href: contributing/workflow.qmd
- text: "Quarto Tutorial"
href: contributing/quarto-website-tutorial.md
- text: "Troubleshooting"
href: contributing/troubleshooting.md
- text: "Community Guidelines"
href: contributing/community.md
- text: "Computing Environment"
href: contributing/environment.qmd
- section: "Workshops & Hackathons"
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href: workshops/index.qmd
contents:
- text: "Workshop Setup"
href: workshops/setup.md
- text: "Cloud Environment Setup"
href: environment-setup/index.qmd
- text: "Privacy Policy"
href: privacy.qmd

format:
html:
grid:
sidebar-width: 500px
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Perhaps the width could be a bit less, given the shorter heading of "How-To Guides (Do a Task)".

include-in-header: _ga-consent-defaults.html
theme:
light: cosmo
Expand All @@ -207,6 +263,8 @@ format:
code-copy: true
css: styles.css
toc: true
link-external-icon: true
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link-external-newwindow: true
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filters:
- include-files.lua
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