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Add bibtex-tidy as a pre-commit hook #408

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0f229ac
Add bibtex-tidy as a pre-commit hook
namurphy Jul 20, 2026
d9d24c5
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 20, 2026
ddf2cd6
Merge branch 'main' into bibtex-tidy
joyvelasquez Jul 24, 2026
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29 changes: 29 additions & 0 deletions .pre-commit-config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -147,3 +147,32 @@ repos:
rev: v2.25.1
hooks:
- id: pyproject-fmt

- repo: local
hooks:
- id: bibtex-tidy
# The official pre-commit hook for bibtex-tidy did not install its
# Node.js requirement, so this is a workaround.
name: autoformat bibliography file
entry: bibtex-tidy
language: node
additional_dependencies: [bibtex-tidy@1.14.0]
files: docs/bibliography.bib
args: # https://github.com/FlamingTempura/bibtex-tidy#cli
- --modify
- --omit=abstract,month,address,adsurl,adsnote
- --curly
- --numeric
- --no-align
- --blank-lines
- --sort
- --duplicates
- --no-strip-comments
- --trailing-commas
- --encode-urls
- --drop-all-caps
- --no-escape
- --sort-fields
- --remove-empty-fields
- --no-wrap
- --tidy-comments
259 changes: 109 additions & 150 deletions docs/bibliography.bib
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Original file line number Diff line number Diff line change
@@ -1,173 +1,132 @@
@ARTICLE{culhane:2007,
author = {{Culhane}, J.~L. and {Harra}, L.~K. and {James}, A.~M. and
{Al-Janabi}, K. and {Bradley}, L.~J. and {Chaudry}, R.~A. and {Rees}, K. and
{Tandy}, J.~A. and {Thomas}, P. and {Whillock}, M.~C.~R. and {Winter}, B. and
{Doschek}, G.~A. and {Korendyke}, C.~M. and {Brown}, C.~M. and {Myers}, S. and
{Mariska}, J. and {Seely}, J. and {Lang}, J. and {Kent}, B.~J. and
{Shaughnessy}, B.~M. and {Young}, P.~R. and {Simnett}, G.~M. and {Castelli},
C.~M. and {Mahmoud}, S. and {Mapson-Menard}, H. and {Probyn}, B.~J. and
{Thomas}, R.~J. and {Davila}, J. and {Dere}, K. and {Windt}, D. and {Shea}, J.
and {Hagood}, R. and {Moye}, R. and {Hara}, H. and {Watanabe}, T. and
{Matsuzaki}, K. and {Kosugi}, T. and {Hansteen}, V. and {Wikstol}, {\O}.},
title = "{The EUV Imaging Spectrometer for Hinode}",
journal = "{Solar Physics}",
@article{culhane:2007,
title = {{The EUV Imaging Spectrometer for Hinode}},
author = {{Culhane}, J.~L. and {Harra}, L.~K. and {James}, A.~M. and {Al-Janabi}, K. and {Bradley}, L.~J. and {Chaudry}, R.~A. and {Rees}, K. and {Tandy}, J.~A. and {Thomas}, P. and {Whillock}, M.~C.~R. and {Winter}, B. and {Doschek}, G.~A. and {Korendyke}, C.~M. and {Brown}, C.~M. and {Myers}, S. and {Mariska}, J. and {Seely}, J. and {Lang}, J. and {Kent}, B.~J. and {Shaughnessy}, B.~M. and {Young}, P.~R. and {Simnett}, G.~M. and {Castelli}, C.~M. and {Mahmoud}, S. and {Mapson-Menard}, H. and {Probyn}, B.~J. and {Thomas}, R.~J. and {Davila}, J. and {Dere}, K. and {Windt}, D. and {Shea}, J. and {Hagood}, R. and {Moye}, R. and {Hara}, H. and {Watanabe}, T. and {Matsuzaki}, K. and {Kosugi}, T. and {Hansteen}, V. and {Wikstol}, {\O}.},
year = 2007,
volume = {243},
number = {1},
pages = {19-61},
doi = {10.1007/s01007-007-0293-1}
journal = {{Solar Physics}},
volume = 243,
number = 1,
pages = {19--61},
doi = {10.1007/s01007-007-0293-1},
}
@ARTICLE{golub:2007,
author = {{Golub}, L. and {Deluca}, E. and {Austin}, G. and {Bookbinder}, J.
and {Caldwell}, D. and {Cheimets}, P. and {Cirtain}, J. and {Cosmo}, M. and
{Reid}, P. and {Sette}, A. and {Weber}, M. and {Sakao}, T. and {Kano}, R. and
{Shibasaki}, K. and {Hara}, H. and {Tsuneta}, S. and {Kumagai}, K. and
{Tamura}, T. and {Shimojo}, M. and {McCracken}, J. and {Carpenter}, J. and
{Haight}, H. and {Siler}, R. and {Wright}, E. and {Tucker}, J. and {Rutledge},
H. and {Barbera}, M. and {Peres}, G. and {Varisco}, S.},
title = "{The X-Ray Telescope (XRT) for the Hinode Mission}",
journal = "{Solar Physics}",
year = 2007,
volume = {243},
number = {1},
pages = {63-86},
doi = {10.1007/s11207-007-0182-1}
}
@ARTICLE{kosugi:2007,
author = {{Kosugi}, T. and {Matsuzaki}, K. and {Sakao}, T. and {Shimizu}, T.
and {Sone}, Y. and {Tachikawa}, S. and {Hashimoto}, T. and {Minesugi}, K. and
{Ohnishi}, A. and {Yamada}, T. and {Tsuneta}, S. and {Hara}, H. and
{Ichimoto}, K. and {Suematsu}, Y. and {Shimojo}, M. and {Watanabe}, T. and
{Shimada}, S. and {Davis}, J.~M. and {Hill}, L.~D. and {Owens}, J.~K. and
{Title}, A.~M. and {Culhane}, J.~L. and {Harra}, L.~K. and {Doschek}, G.~A.
and {Golub}, L.},
title = "{The Hinode (Solar-B) Mission: An Overview}",
journal = "{Solar Physics}",
year = 2007,
volume = {243},
number = {1},
pages = {3-17},
doi = {10.1007/s11207-007-9014-6}
}
@ARTICLE{tsuneta:2008,
author = {{Tsuneta}, S. and {Ichimoto}, K. and {Katsukawa}, Y. and {Nagata},
S. and {Otsubo}, M. and {Shimizu}, T. and {Suematsu}, Y. and {Nakagiri}, M.
and {Noguchi}, M. and {Tarbell}, T. and {Title}, A. and {Shine}, R. and
{Rosenberg}, W. and {Hoffmann}, C. and {Jurcevich}, B. and {Kushner}, G. and
{Levay}, M. and {Lites}, B. and {Elmore}, D. and {Matsushita}, T. and
{Kawaguchi}, N. and {Saito}, H. and {Mikami}, I. and {Hill}, L.~D. and
{Owens}, J.~K.},
title = "{The Solar Optical Telescope for the Hinode Mission: An Overview}",
journal = "{Solar Physics}",
year = 2008,
volume = {249},
number = {2},
pages = {167-196},
doi = {10.1007/s11207-008-9174-z}
}
@ARTICLE{narukage:2011,
author = { {Narukage}, N. and {Sakao}, T. and {Kano}, R. and {Hara}, H. and
{Shimojo}, M. and {Bando}, T. and {Urayama}, F. and {DeLuca}, E. and {Golub},
L. and {Weber}, M. and {Grigis}, P. and {Cirtain}, J. and {Tsuneta}, S.},
title = "{Coronal-Temperature-Diagnostic Capability of the Hinode/X-Ray
Telescope Based on Self-Consistent Calibration}",
journal = "{Solar Physics}",
year = 2011,
volume = {269},
number = {1},
pages = {169-236},
doi = {10.1007/s11207-010-9685-2}
}
@ARTICLE{narukage:2014,
author = { {Narukage}, N. and {Sakao}, T. and {Kano}, R. and {Shimojo}, M.
and {Winebarger}, A. and {Weber}, M. and {Reeves}, K. },
title = "{ Coronal-Temperature-Diagnostic Capability of the Hinode/X-Ray
Telescope Based on Self-consistent Calibration. II. Calibration with On-Orbit
Data }",
journal = "{Solar Physics}",
year = 2014,
number = {3},
volume = {289},
pages = {1029-1042},
doi = {10.1007/s11207-013-0368-7}
}
@ARTICLE{feldman:1992,
author = { {Feldman}, U. },
title = "{ Elemental abundances in the upper solar atmosphere }",
journal = "{Physica Scripta}",

@article{feldman:1992,
title = {{ Elemental abundances in the upper solar atmosphere }},
author = {{Feldman}, U.},
year = 2014,
volume = {46},
number = {3},
pages = {202-220},
doi = {10.1088/0031-8949/46/3/002}
journal = {{Physica Scripta}},
volume = 46,
number = 3,
pages = {202--220},
doi = {10.1088/0031-8949/46/3/002},
}
@ARTICLE{Fludra:1999,

@article{Fludra:1999,
title = {{The absolute coronal abundances of sulfur, calcium, and iron from Yohkoh-BCS flare spectra}},
author = {{Fludra}, A. and {Schmelz}, J.~T.},
title = "{The absolute coronal abundances of sulfur, calcium, and iron from
Yohkoh-BCS flare spectra}",
journal = "{Astronomy \& Astrophysics}",
keywords = {SUN: ABUNDANCES, SUN: CORONA, SUN: FLARES, SUN: X-RAYS, GAMMA RAYS},
year = 1999,
month = aug,
volume = {348},
pages = {286-294},
adsurl = {https://ui.adsabs.harvard.edu/abs/1999A&A...348..286F},
adsnote = {Provided by the SAO/NASA Astrophysics Data System}
journal = {{Astronomy \& Astrophysics}},
volume = 348,
pages = {286--294},
keywords = {Sun: Abundances, Sun: Corona, Sun: Flares, Sun: X-rays, Gamma Rays},
}
@ARTICLE{Grevesse:2007,

@article{golub:2007,
title = {{The X-Ray Telescope (XRT) for the Hinode Mission}},
author = {{Golub}, L. and {Deluca}, E. and {Austin}, G. and {Bookbinder}, J. and {Caldwell}, D. and {Cheimets}, P. and {Cirtain}, J. and {Cosmo}, M. and {Reid}, P. and {Sette}, A. and {Weber}, M. and {Sakao}, T. and {Kano}, R. and {Shibasaki}, K. and {Hara}, H. and {Tsuneta}, S. and {Kumagai}, K. and {Tamura}, T. and {Shimojo}, M. and {McCracken}, J. and {Carpenter}, J. and {Haight}, H. and {Siler}, R. and {Wright}, E. and {Tucker}, J. and {Rutledge}, H. and {Barbera}, M. and {Peres}, G. and {Varisco}, S.},
year = 2007,
journal = {{Solar Physics}},
volume = 243,
number = 1,
pages = {63--86},
doi = {10.1007/s11207-007-0182-1},
}

@article{Grevesse:2007,
title = {{The Solar Chemical Composition}},
author = {{Grevesse}, N. and {Asplund}, M. and {Sauval}, A.~J.},
title = "{The Solar Chemical Composition}",
journal = {\ssr},
keywords = {Sun: abundances, photosphere, corona},
year = 2007,
month = jun,
volume = {130},
journal = {\ssr},
volume = 130,
number = {1-4},
pages = {105-114},
pages = {105--114},
doi = {10.1007/s11214-007-9173-7},
adsurl = {https://ui.adsabs.harvard.edu/abs/2007SSRv..130..105G},
adsnote = {Provided by the SAO/NASA Astrophysics Data System}
keywords = {Sun: abundances, photosphere, corona},
}
@ARTICLE{Guidoni:2015,
author = {{Guidoni}, S. E. and McKenzie, D. E. and Longcope, D. W. and
Plowman, J. E. and Yoshimura, K.},
title = "{Temperature and Electron Density Diagnostics of a
Candle-flame-shaped Flare}",
journal = {\ssr},
keywords = {magnetic reconnection; shock waves; Sun: flares; Sun: UV radiation; Sun: X-rays; gamma rays},

@article{Guidoni:2015,
title = {{Temperature and Electron Density Diagnostics of a Candle-flame-shaped Flare}},
author = {{Guidoni}, S. E. and McKenzie, D. E. and Longcope, D. W. and Plowman, J. E. and Yoshimura, K.},
year = 2015,
month = Feb,
volume = {800},
number = {54},
pages = {},
journal = {\ssr},
volume = 800,
number = 54,
doi = {10.1007/s11214-007-9173-7},
adsurl = {https://ui.adsabs.harvard.edu/abs/2015ApJ...800...54G/},
adsnote = {Provided by the SAO/NASA Astrophysics Data System}
keywords = {magnetic reconnection; shock waves; Sun: flares; Sun: UV radiation; Sun: X-rays; gamma rays},
}

@article{kosugi:2007,
title = {{The Hinode (Solar-B) Mission: An Overview}},
author = {{Kosugi}, T. and {Matsuzaki}, K. and {Sakao}, T. and {Shimizu}, T. and {Sone}, Y. and {Tachikawa}, S. and {Hashimoto}, T. and {Minesugi}, K. and {Ohnishi}, A. and {Yamada}, T. and {Tsuneta}, S. and {Hara}, H. and {Ichimoto}, K. and {Suematsu}, Y. and {Shimojo}, M. and {Watanabe}, T. and {Shimada}, S. and {Davis}, J.~M. and {Hill}, L.~D. and {Owens}, J.~K. and {Title}, A.~M. and {Culhane}, J.~L. and {Harra}, L.~K. and {Doschek}, G.~A. and {Golub}, L.},
year = 2007,
journal = {{Solar Physics}},
volume = 243,
number = 1,
pages = {3--17},
doi = {10.1007/s11207-007-9014-6},
}

@article{narukage:2011,
title = {{Coronal-Temperature-Diagnostic Capability of the Hinode/X-Ray Telescope Based on Self-Consistent Calibration}},
author = {{Narukage}, N. and {Sakao}, T. and {Kano}, R. and {Hara}, H. and {Shimojo}, M. and {Bando}, T. and {Urayama}, F. and {DeLuca}, E. and {Golub}, L. and {Weber}, M. and {Grigis}, P. and {Cirtain}, J. and {Tsuneta}, S.},
year = 2011,
journal = {{Solar Physics}},
volume = 269,
number = 1,
pages = {169--236},
doi = {10.1007/s11207-010-9685-2},
}
@ARTICLE{Takeda:2016,

@article{narukage:2014,
title = {{ Coronal-Temperature-Diagnostic Capability of the Hinode/X-Ray Telescope Based on Self-consistent Calibration. II. Calibration with On-Orbit Data }},
author = {{Narukage}, N. and {Sakao}, T. and {Kano}, R. and {Shimojo}, M. and {Winebarger}, A. and {Weber}, M. and {Reeves}, K.},
year = 2014,
journal = {{Solar Physics}},
volume = 289,
number = 3,
pages = {1029--1042},
doi = {10.1007/s11207-013-0368-7},
}

@article{Takeda:2016,
title = {{The Hinode/XRT Full-Sun Image Corrections and the Improved Synoptic Composite Image Archive}},
author = {{Takeda}, A. and Yoshimura, K. and Saar, S. H.},
title = "{The Hinode/XRT Full-Sun Image Corrections and the Improved
Synoptic Composite Image Archive}",
journal = {\ABS},
keywords = {Corona; Data calibration; Instrumental effects; Instrumentation
and data management},
year = 2016,
month = Jan,
volume = {291},
number = {},
pages = {317-333},
journal = {\Abs},
volume = 291,
pages = {317--333},
doi = {https://doi.org/10.1007/s11207-015-0823-8},
adsurl = {https://ui.adsabs.harvard.edu/abs/2016SoPh..291..317T/abstract},
adsnote = {Provided by the SAO/NASA Astrophysics Data System}
keywords = {Corona; Data calibration; Instrumental effects; Instrumentation and data management},
}

@article{tsuneta:2008,
title = {{The Solar Optical Telescope for the Hinode Mission: An Overview}},
author = {{Tsuneta}, S. and {Ichimoto}, K. and {Katsukawa}, Y. and {Nagata}, S. and {Otsubo}, M. and {Shimizu}, T. and {Suematsu}, Y. and {Nakagiri}, M. and {Noguchi}, M. and {Tarbell}, T. and {Title}, A. and {Shine}, R. and {Rosenberg}, W. and {Hoffmann}, C. and {Jurcevich}, B. and {Kushner}, G. and {Levay}, M. and {Lites}, B. and {Elmore}, D. and {Matsushita}, T. and {Kawaguchi}, N. and {Saito}, H. and {Mikami}, I. and {Hill}, L.~D. and {Owens}, J.~K.},
year = 2008,
journal = {{Solar Physics}},
volume = 249,
number = 2,
pages = {167--196},
doi = {10.1007/s11207-008-9174-z},
}
@ARTICLE{velasquez:2024,

@article{velasquez:2024,
title = {{XRTpy: A Hinode-X-Ray Telescope Python Package}},
author = {{Velasquez}, J. and {Murphy}, N. and {Reeves}, K.~K. and {Slavin}, J. and {Weber}, M. and {Barnes}, W.},
title = "{XRTpy: A Hinode-X-Ray Telescope Python Package}",
journal = "{Journal of Open Source Software}",
year = 2024,
volume = {9},
number = {100},
pages = {6396},
journal = {{Journal of Open Source Software}},
volume = 9,
number = 100,
pages = 6396,
doi = {10.21105/joss.06396},
url = {https://doi.org/10.21105/joss.06396}
url = {https://doi.org/10.21105/joss.06396},
}
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