XRT DEM Iterative Solver Module - #367

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joyvelasquez:xray-plasma-decoder-dem-solver

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Commits on Jul 2, 2026

Adding a quick for consistency;
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86db756
Adding functions
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4d7c6c3
Updated method of naming functions
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48ece65
Adding XRTDEMIterative class to the init
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2807698
Adding intensity_errors function
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8358176
Adding conditions to values
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c3771eb
Adding more basic info for using in mandatory functions and check of input
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74dd7bd
Applied ruff
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25c5db3
Add basic function to recorde number of MC user wantst to run
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ff31804
Applied black
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2838869
Adding max iter
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9561400
Adding create_logT_grid
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138607c
Adding _build_response_matrix
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0fa5fe1
Trying to get a working initial estimate of how much plasma is emitting at each temperature
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21a531a
Creating a script for monte_carlo_iteration'
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5c991ee
Adding init
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1816707
WIP: saving changes before rebase
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2fc245f
Updating path the data file
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3c7a4bc
Updating init info
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a74729d
Applied Black
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c2c4c35
Working on solving DEM scale issue
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3944f7f
Working on create_logT_grid
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7036ad5
move the emptiness check above the formatter.
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cbcba8f
Tighten the first error block
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dca1482
little snippet is just a guardrail to make sure your log-T grid is real and big enough
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8607a60
Forgot to define - n_pts
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d24c662
Redundant error check block at the end
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0068823
Minnor clean up
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2ef60eb
Clean up on docstrings
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bf99867
Trigger the warning only once, store the result
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6d1f9b3
Clean up on docstrings
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02b188b
Clean up text
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be936b6
Updating create_logT_grid
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f05960e
Applying black
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156c4b2
Updated _interpolate_responses_to_grid
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fac60a0
Removing code where it is used twice for the same reason
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18a79ba
Cleaning up some function logic;
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4fdce42
Adding ComputeDEMStatistics
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446d443
Script for DEM Stats
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d82e0f5
Adding ComputeDEMStatistics
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42e90a6
Removing unsed code
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81ad0bf
Applying black
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a42ad9c
Minor update to MC code
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bd2b627
If lmfit is required for any normal use (not just testing)
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dc3ee4c
Syntax error
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3d34d03
missing a validate_inputs() method
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6716aa9
Putting validate_inputs() inside class
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ce3eafc
Cleaning codedem_solver.py
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8cce0c5
Cleaning code
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1916386
Cleaning code - test
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17d9d38
UPdated with two reference for DEM paper
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2cf71f9
WIP: local changes before pull
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761d98a
WIP: local changes in dem_solver.py
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a5371b6
Trying to fix git doc 3.13 failing test
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f45d226
fixing - generate_temperature_responses reference
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a5753cf
Cleaning function
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4da0801
Clean and updated - create_logT_grid
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368dead
Update two functions
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df229eb
Removing_build_response_matrix function
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52c1ee4
Removing older version of -_interpolate_responses_to_grid
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cc33c20
Clean code and apply black to triple checked code
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ba2dd65
Updated solver still needs alot of work - just saving
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fb09050
Moving plotting function to its own script
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839cab9
Applying black to plotting
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e917a48
Updated and cleaned out dem_solver main code
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86f4149
Removed code that is not going to be used
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05c5439
Removed and cleared out code - will update soon
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0f3135d
Appling black
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637aae7
Testingccorrect physical units
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cb6edcf
Corrected use of relative_error and added notes to correct/check later
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69bd45e
Updated function names to better understand/reference in code
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ee36971
Debugging-updates made
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1fe04cb
Adding code incase - observed intensities are all zero.
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44de13d
Fixing placement of code
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c48aafc
Prepare the scaled observed intensities and uncertainties-new function
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f02dee8
Just a note to add test for scaling before being sent to DEM function
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3e0502b
Removed self.logT in the init and kept a sinlge one in a created functioncreate_logT_grid which simply creates the temperature grid which will be used in the whole code/dem.
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825f878
Clean up - _estimate_initial_dem and mirror IDL where I forgot to -Use flat dem for inital guess
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9d3a863
Cleaned up code and methods
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8750b78
Quick clean up
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a5bcd28
Working on the MC'
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08da812
Removing code that will not be used
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d1d7214
Worked on the code method and finally got a DEM and MC to work, main issue - use *result.params*, not params0. I think I finally got the DEM WORKINGGGGGG
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31afce2
Cleaning up plotting to just two.
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f092029
Clean up code and added summary function
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37099b1
Cleaned up plotting functions
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e79709f
Cleaning up minor code issues
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c2b8f00
Removed xrt_dem_statistics.py and monte_carlo_iteration.py
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b1e4fab
Cleaned up summary function
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153593c
Working on test now
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a4127f1
Adding more test
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f892208
Correction to warning error output
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ea9121b
Adding more test
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70a9769
spline testing
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26acfe8
Creating test for residuals - dummy data
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7d85b17
Adding more test, and cleaning up formatting
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697daf1
Now working on docstrings-main function doc
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ee34058
Updating intensity_errors doc
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4155a1e
Cleaned up doc for _interpolate_responses_to_grid and _estimate_initial_dem
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baeba6f
Added more docstrings and code formatting using tools like black, ruff, ect.
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fb45468
Few string/comment edits
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d69d012
Cleaning up code and removing comments
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7b4d9c6
Working on docs site for the DEM
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324c36a
Updating doc site page
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56c5096
Updating DEM doc site
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1426578
Few doc edits
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9c0f0cd
Trying to fix github doc test to pass
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477f6a8
Added three new works-def
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ba02fb1
Working on test for DEM;
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54a587f
Updating testing values to real values
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8afe3cc
Adding more IDL sav DEM testing files
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e16210e
Adding intensities warning for values given for 2500.
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41dfa29
Adding warning for Negative observed intensities
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0eeb78d
Working on doc site
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7509568
Updated text in doc site
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da01388
Updated in Overview of the XRTDEMIterative section
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33abf4f
Updating text in Comparison with IDL with IDL section
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17c6590
Updating text in Mathematical background section
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d8efece
Overall update/review of doc
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d6f0099
Creating a new rst in reference for XRT DEM
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38cc1d3
Adding sys
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c9d78c1
Updated some text
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c1769d6
Updating reference files
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4300a67
updated init
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9e0355d
Updated doc string
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a19b235
Working on a DEM notebook
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8cd0d9a
Working to fix github doc testing - no passing
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71534f9
Updating docstrings
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f3c49d2
Updating api
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5ab021d
Reviewing test- clearing up names, test, and methods
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b04bdef
Removed section into a new script
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5ace46f
Adding IDL data for testing with xrtpy- dem
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f649c9b
New DEM testing-script for IDL and Python
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010bb73
Created a new scipt that will be use to host functions-help break down IDL data - ready for xrtpy testing
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90ab741
Applying black to code formatting
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4820e47
Update DEM test logic and utilities
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42591e8
Testing out method to fix bug
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12afcc7
Removing _run_monte_carlo - never reference after all
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b862be5
Updating testing method
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8627364
Updating/correcting - weights
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c346b54
Removing dead code - testing DEM without it - _prepare_scaled_observations
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90dc1a0
Update test to reflect changes - Python implementation overrides with flat logDEM = 0
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f08dbba
Update methods
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4f166f1
Updating number value trigger
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6ff262b
rename all areas from errors to intensity
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fd3489f
Cleaning up code
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64b8f6a
Clean up summary function
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6488dd0
Fixing ruff checks for all
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fc70428
Updated plotting methods-better display
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c0f4c0f
Minor updates
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0f894d3
Cleaning up script
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0aa42b5
Rename test file to lowercase for consistency
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4358da5
Rename test file to lowercase for consistency
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4745ebb
Removing printing statement that is not need
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aea8dee
[pre-commit.ci] auto fixes from pre-commit.com hooks

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c45731f
Fixing pre-commit issue - link to logger placement in code
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be85604
Updating text using error to uncertainities
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ece4fbc
Minor edits
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ac88d85
Fixing minor issues to pass github doc test
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25d6faf
Fixing minor issues to pass github doc test
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da34ef8
Fixing minor issues to pass github doc test
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7f856dc
Working to pass doc test
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796d302
Working to pass doc test
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bcd4b6b
Working to pass doc test-part 6
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d33bf49
Working to fix doc github testing
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ddbff64
Working to fix doc github testing
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ce14c67
Renaming files ince CI fast as test
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c149483
Working to pass Github python 3.13 test
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0d0dc4d
Working to fix python 3.11 git test
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46b01f4
Working to fix python 3.11 git test pt2
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d25a54e
Working to fix python 3.11 git test pt3
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Startign to work on the change log.
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3a3388f
Startign to work on the change log-pt 2.
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60e7299
Working on userface printing info
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8197c63
Rename DEM test file to test_dem_solver
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5e74e50
Added plot smoke tests
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3f0f401
Testing intensity_uncertainties
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cfb0f00
Updated-near complete exaple user code
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74c13f9
Updated-near complete exaple user code pt2-git python test not passing
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60dba66
Updating plotting to have info about the default error method used for the plotting
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18913e9
Creating a tool to run in all sav files for testing
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81b61d4
updated solver
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b72b28c
Script to help run and open IDL -sav files for DEM testing in XRTpy
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e933057
Helper script for plots
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49ac973
Creating a new script to help me test IDL vs XRTpy more cleanly
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b3c9f46
Code to plot results from testing/comparsion
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a617859
Testing script
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e2e4eef
Removing random script
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564633c
Moving older testing methods to other section before deleting
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99d8d35
Removing legacy IDL comparsion scripts and test data files
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7bdea4d
Moving a checking-function yup sooner to makes sure it gets triggered/reached
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cf84bc0
Adding more basic testing with expected outcomes
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bfbc35e
Adding more basic testing with expected outcomes-pt2
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7643e6f
Correction to _reconstruct_dem_from_knots function- n_spl >= 2
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d568aaf
Updated and latest basic testing - 3 real bugs caught!
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f0a910a
Updates
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b8859ef
Will be working on this soon - empty for now
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d257af0
Created to help plot test
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f042bb5
Minnor changes
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d481a0a
Will be adding to it soon
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b4d70ff
Push forward to move to a different PR
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05d76f7
Push forward to move to a different PR
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582c8f7
[pre-commit.ci] auto fixes from pre-commit.com hooks
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8b054ed
Add ruff config and fix pre-commit issues for DEM PR
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45cdab6
Enable parallel test execution in noxfile (#400)

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Merge branch 'main' into xray-plasma-decoder-dem-solver
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5fad287

Commits on Jul 6, 2026

Merge branch 'main' into xray-plasma-decoder-dem-solver
joyvelasquez
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ce10dc2
Merge branch 'main' into xray-plasma-decoder-dem-solver
joyvelasquez
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19cff82
Update docs/dem_overview.rst

joyvelasquez
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namurphy
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9e2e392
Update docs/dem_overview.rst

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8d3b5d8
Fixing log string - following suggestion by Nic
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956facd
Fixing log string - following suggestion by Nic
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167bccf

Commits on Jul 13, 2026

Update docs/glossary.rst

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namurphy
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b0c8699
Update docs/glossary.rst

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a91b179
Edits made in reference of Nicks comment of adding an example
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347c10a
Adding more details to explain what IDL uses verse python
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5016150
Adding note for users about default parameter
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39f4f3d
Removing Acknowledgement - shohld be place in a different location
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e36eb09

Commits on Jul 14, 2026

Update xrtpy/xrt_dem_iterative/test/__init__.py

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1df976b
Restore stashed DEM testing scripts and resolve conflicts
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5b97d57
Code to plot IDL, XRTpy, and Fake Known data all together with even errors
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7593350
Plotting IDL and known fake DEM
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d34dea9

Commits on Jul 15, 2026

Updated info for 0.6.0 - getting ready for review
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46d9a71
Adding couple of words
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b413a30
I had a typo
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6c14142
Updated for DEM related + extra info for visitors
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0e8289e

Commits on Jul 16, 2026

Updated code over all to pass ruff testing
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337dba6
minor updated to pass ruff check
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b1ac0ba
Updated for ruff checking to pass
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64f3295
Updating conf
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558254d
Added /uv.lock root
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4d50ffa
Updated for ruff check
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885de43
Seems to having updated when I ran ruffs
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b745a24
Coding for plotting XRTpy and IDL code-real data
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7ef1aae

Commits on Jul 17, 2026

Minor modifications
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bb258ef

Commits on Jul 24, 2026

Merge branch 'main' into xray-plasma-decoder-dem-solver
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510fd51

Commits on Jul 27, 2026

Update docs/reference/xrt_dem_iterative.rst

joyvelasquez
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namurphy
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1ffbaa2
Update docs/dem_overview.rst

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19e857c
Update docs/dem_overview.rst

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d7d1cb6
Update docs/dem_overview.rst

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3e029b0
Update docs/dem_overview.rst

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3e420ef
Update docs/dem_overview.rst

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Update docs/dem_overview.rst

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3728ddb
Update docs/dem_overview.rst

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f4e8450
Update docs/dem_overview.rst

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1305f61
Update docs/dem_overview.rst

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d467d58
Update docs/dem_overview.rst

joyvelasquez
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a9c4743
Update docs/dem_overview.rst

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6f1a853
Updated section to Comparison with IDL
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a4619c6
Adding synthetic_dem_data which will be used for testing etc.
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