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Update Reader according to the App Def modification.#22

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RubelMozumder merged 20 commits into
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FixReaderAlngAppDef
Mar 25, 2025
Merged

Update Reader according to the App Def modification.#22
RubelMozumder merged 20 commits into
mainfrom
FixReaderAlngAppDef

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@RubelMozumder
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Update the reacder accoding the modification that comes through the PR:

  1. Fix nymaType, NXidentifier, NXcomponent instead of NXobject where nee… nexus_definitions#349

The changes are aligned with PR in pynxtools
3. FAIRmat-NFDI/pynxtools#578

What's to be modified:

  1. Update config files in examples and default config files that come through pynxtool-spm package.
  2. Update the examples for NOMAD.
  3. Implement the links to the concepts

Comment thread pyproject.toml Outdated
Comment on lines 24 to 26
# "pynxtools>=0.10.0",
"pynxtools @ git+https:github.com/FAIRmat-NFDI/pynxtools.git@update_SPM#egg=pynxtools",
# "pySPM==0.6.2", # SPM file reader for Bruker files use it when you have Bruker files
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Fix pynxtools version.

@RubelMozumder RubelMozumder requested a review from sanbrock March 25, 2025 11:34
name: DemoName
sample_component_set:
sample_component:
Sample_component_set:
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We had decided before to not use NXsample_component_set anymore (see nexusformat/definitions#1413). I suggest you keep it for now and refactor later.

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Note also that NXsample_component_set is not used in NXsample anymore. We should just drop this class at some point.

Comment thread pyproject.toml Outdated
"findiff",
"pynxtools>=0.9.2",
# "pynxtools>=0.10.0",
"pynxtools @ git+https://github.com/FAIRmat-NFDI/pynxtools.git@update_SPM#egg=pynxtools",
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remember to reset to pynxtools>=0.10.1

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Why is there a zip file in the STSExampleWithCustomization?

@RubelMozumder RubelMozumder marked this pull request as ready for review March 25, 2025 14:56
@RubelMozumder RubelMozumder merged commit b27a010 into main Mar 25, 2025
@RubelMozumder RubelMozumder deleted the FixReaderAlngAppDef branch March 25, 2025 14:57
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2 participants