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Use minigraph with the large-inversion patch #1948

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Use minigraph with the large-inversion patch #1948

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4 changes: 2 additions & 2 deletions build-tools/downloadPangenomeTools
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Expand Up @@ -71,9 +71,9 @@ fi

# minigraph
cd ${pangenomeBuildDir}
git clone https://github.com/lh3/minigraph.git
git clone https://github.com/glennhickey/minigraph.git
pushd minigraph
git checkout v0.21
git checkout 4636f2d42864ee7a32c082d23097fb226acd2a67
# hack in flags support
sed -i Makefile -e 's/CFLAGS=/CFLAGS+=/' -e 's/LIBS=/LIBS+=/'
LIBS="${jemallocLib}" make -j ${numcpu}
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