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sirfunctions 2.1.7#437

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michellesloan-cdc merged 39 commits into
mainfrom
hotfix
Apr 16, 2026
Merged

sirfunctions 2.1.7#437
michellesloan-cdc merged 39 commits into
mainfrom
hotfix

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@michellesloan-cdc

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Closes PR #430
Closes PR #404

mcuadera and others added 30 commits December 15, 2025 11:11
…with-the-pins-board-on-azure

❇️ Function to interact with the pins board on Azure
Updated to allow countries with commas in the name to pass as one country.
<<- will be a warning when devtools::check() runs. assign() is a way to circumvent that
when generating the positives timeliness data
some date collections are more than a year ahead of the date onset
…ith-commas-in-the-name

403 init dr cant find countries with commas in the name
Removed the pop data renaming code because it was not doing anything with the new names in pop dataset.
- correct region lookup to ensure WPRO for Indonesia
- correctly get_ctry_abbrev function to address Paraguay
-add filter to the image to only show High Priority countries
various updates to correct violin plot outputs:
- some cleanup of unnecessary code
- change y_max for two violin plots to be max of indicator
- correct a lab indicator to ensure all seq.capcity are considered
michellesloan-cdc and others added 8 commits April 14, 2026 15:02
correct issue with return df
correction to added y_max to allow user to enter a number as a function argument
update to kpi template to add code for users to check violin ranges
update documentation with document()
additional changes to kpi template
change to what is an error in github actions check
changes to kpi template
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codecov-commenter commented Apr 15, 2026

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Codecov Report

❌ Patch coverage is 0% with 121 lines in your changes missing coverage. Please review.
✅ Project coverage is 2.00%. Comparing base (1fc7358) to head (b0bca89).
⚠️ Report is 2 commits behind head on main.

Files with missing lines Patch % Lines
R/kpi.main.functions.R 0.00% 48 Missing ⚠️
R/kpi.figure.functions.R 0.00% 40 Missing ⚠️
R/kpi.table.functions.R 0.00% 26 Missing ⚠️
R/dr.main.functions.R 0.00% 3 Missing ⚠️
R/get_edav_pins_board.R 0.00% 2 Missing ⚠️
R/dal.R 0.00% 1 Missing ⚠️
R/dr.lab.functions.R 0.00% 1 Missing ⚠️
Additional details and impacted files
@@           Coverage Diff            @@
##            main    #437      +/-   ##
========================================
- Coverage   2.01%   2.00%   -0.02%     
========================================
  Files         37      38       +1     
  Lines      15002   15079      +77     
========================================
  Hits         302     302              
- Misses     14700   14777      +77     

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@michellesloan-cdc michellesloan-cdc left a comment

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Ready for review

@chadhunt2 chadhunt2 left a comment

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PR looks good. Took time to try to understand the codecov report. Looks like it's related to unit testing.

@michellesloan-cdc michellesloan-cdc merged commit 76da759 into main Apr 16, 2026
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4 participants