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convert KEGGgraph.Rnw to KEGGgraph.Rmd #16

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convert KEGGgraph.Rnw to KEGGgraph.Rmd #16

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50e9934
add bib file, add KEGGgraph.Rmd
sonali8434 Aug 14, 2023
a1fc2f3
add bioinformatics.csl
sonali8434 Aug 14, 2023
0a92764
added csl in .yaml
sonali8434 Aug 14, 2023
239993b
removed .Rmd file, fix plot
sonali8434 Aug 18, 2023
5c50c67
update discription, made requested changes
sonali8434 Aug 19, 2023
573a878
added sonali as cnt,updated disc file
sonali8434 Aug 25, 2023
456f6b6
removed .Rnw from comment in desc file
sonali8434 Aug 25, 2023
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12 changes: 9 additions & 3 deletions DESCRIPTION
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Expand Up @@ -4,8 +4,13 @@ Title: KEGGgraph: A graph approach to KEGG PATHWAY in R and
Bioconductor
Version: 1.59.3
Date: 2022-12-18
Author: Jitao David Zhang, with inputs from Paul Shannon and Hervé Pagès
Maintainer: Jitao David Zhang <jitao_david.zhang@roche.com>
Authors@R: c(
person("Paul", "Shannon", role = "ctb"),
person("Hervé", "Pagès", role = "ctb"),
person("Sonali", "Kumari", role = "ctb",
comment = "Converted KEGGgraph vignette from Sweave to RMarkdown / HTML."),
person("Jitao David", "Zhang",
email = "jitao_david.zhang@roche.com", role = c("aut", "cre")))
Description: KEGGGraph is an interface between KEGG pathway and graph
object as well as a collection of tools to analyze, dissect and
visualize these graphs. It parses the regularly updated KGML
Expand All @@ -18,9 +23,10 @@ LazyData: yes
Depends: R (>= 3.5.0)
Imports: methods, XML (>= 2.3-0), graph, utils, RCurl, Rgraphviz
Suggests: RBGL, testthat, RColorBrewer, org.Hs.eg.db,
hgu133plus2.db, SPIA
hgu133plus2.db, SPIA, BiocStyle, knitr
Collate: kegg2graph-functions.R parse.R annotation.R graph.R kgmlfile.R
misc.R vis.R
URL: http://www.nextbiomotif.com
biocViews: Pathways, GraphAndNetwork, Visualization, KEGG
Encoding: UTF-8
VignetteBuilder: knitr
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