Makefile

# Use '>' instead of TAB to start recipe lines
.RECIPEPREFIX := >

# ---------- Variables ----------
API          ?= http://localhost:8000
VENV         ?= .venv
PY           := $(VENV)/bin/python
PIP          := $(VENV)/bin/pip
PYTEST       := $(VENV)/bin/pytest
COMPOSE      := docker compose --env-file .env
TOKEN        ?=
TOKEN_FILE   ?= .token

# ---------- Help (default) ----------
.PHONY: help
.SILENT: help
help:
> echo "Available commands:"
> echo "App Local Run - DED/QA: "
> echo "  make venv							# Create local venv and install deps"
> echo "  make run-app							# Start FastAPI locally (no Docker)"
> echo "  make run-consumer						# Start consumer locally (no Docker)"
> echo "  make run-rabbitmq						# Start RabbitMQ on Docker"
> echo "  make stop-rabbitmq						# Stop RabbitMQ container"
> echo "  make rm-rabbitmq						# Remove RabbitMQ container (after stop)"
> echo "  make run-redis						# Start Reddis on Docker"
> echo "  make stop-redis						# Stop Redis container"
> echo "  make rm-redis							# Remove Redis container (after stop)"
> echo "Docker - PROD: "
> echo "  make docker-up						# Start Docker stack (api, consumer, rabbitmq, redis)"
> echo "  make docker-down						# Stop and remove containers + volumes"
> echo "  make logs								# Tail logs from api and consumer"
> echo "  make logs-all							# Tail logs from all services"
> echo "  make logs-rabbit						# Tail RabbitMQ logs"
> echo "  make logs-redis						# Tail Redis logs"
> echo "  make retrieve-notification-logs				# Retrieve generated logs for emulation of email sending and Audit repository"
> echo "Validate API: "
> echo "  make get-token USER=<u> PASS=<p>				# Obtain and save access token (/security/token)"
> echo "  make seed-db							# Seed DB with Mock Patients, Procedures, Recomendations, and Patient Procedures (uses TOKEN or .token)"
> echo "  make eval-patient PATIENT_ID=<id>				# Evaluate Patient to generate recomendations if any"
> echo "  make get-recom PATIENT_ID=<id>				# Get evaluated recommendations for a given patient"
> echo "Built: "
> echo "  make build-pkg						# Build wheel & sdist (includes schema)"
> echo "  make install-pkg						# Install built wheel locally"
> echo "  make editable							# pip install -e .[dev]"
> echo "API Misc: "
> echo "  make health							# Quick health check against API"
> echo "  make clean							# Remove caches"
> echo "  make clean-pkg						# Remove build artifacts"
> echo "  make clean-logs						# Remove logs/*.log and logs/*.ndjson"

# ---------- Python env ----------
.PHONY: venv
venv:
> python -m venv $(VENV)
> $(PIP) install -U pip
> $(PIP) install -e .[dev]

# ---------- Local  ----------
.PHONY: run-app run-consumer
run-app:
> mkdir -p app/data
> $(PY) -m uvicorn app.main:app --host 0.0.0.0 --port 8000

run-consumer:
> $(PY) -m app.events.consumer


# ---------- RabbitMQ ----------
.PHONY: run-rabbitmq stop-rabbitmq rm-rabbitmq logs-rabbit health-rabbit
run-rabbitmq:
> $(COMPOSE) up -d --build rabbitmq
> echo "RabbitMQ UI: http://localhost:15672  (guest/guest)"

stop-rabbitmq:
> $(COMPOSE) stop rabbitmq

rm-rabbitmq:
> $(COMPOSE) rm -f rabbitmq


# ---------- Redis ----------
.PHONY: run-redis stop-redis rm-redis logs-redis health-redis
run-redis:
> $(COMPOSE) up -d --build redis

stop-redis:
> $(COMPOSE) stop redis

rm-redis:
> $(COMPOSE) rm -f redis


# ---------- Docker lifecycle ----------
.PHONY: docker-up docker-down logs logs-all logs-rabbit logs-redis retrieve-notification-logs health
docker-up:
> $(COMPOSE) up -d --build

docker-down:
> $(COMPOSE) down -v
logs:
> $(COMPOSE) logs -f api consumer
logs-all:
> $(COMPOSE) logs -f

logs-rabbit:
> $(COMPOSE) logs -f rabbitmq
logs-redis:
> $(COMPOSE) logs -f redis

# Get retained email and audit logs
CONTAINER_NAME=recommendation-consumer
HOST_LOG_DIR=./retrieved_logs
CONTAINER_LOG_DIR=app/logs
retrieve-notification-logs:
> @echo "Retrieving logs from container: $(CONTAINER_NAME)"
> @mkdir -p $(HOST_LOG_DIR)
> docker cp $(CONTAINER_NAME):$(CONTAINER_LOG_DIR) $(HOST_LOG_DIR)
> @echo "Logs copied to $(HOST_LOG_DIR)/logs"

health:
> curl -fsS $(API)/docs >/dev/null && echo "API up at $(API)" || (echo "API not responding at $(API)"; exit 1)


# ---------- Auth (OAuth2 Password @ /security/token) ----------
# Usage:
#   make get-token USER=admin PASS=secret
USER ?=
PASS ?=

.PHONY: get-token
get-token:
> if [ -z "$(USER)" ] || [ -z "$(PASS)" ]; then echo "Usage: make get-token USER=<username> PASS=<password>"; exit 1; fi; \
> set -e; \
> echo "Requesting token (form) from $(API)/security/token ..."; \
> RESP="$$(curl -sS -X POST "$(API)/security/token" -H "accept: application/json" -H "Content-Type: application/x-www-form-urlencoded" -d "grant_type=password&username=$(USER)&password=$(PASS)&scope=&client_id=&client_secret=")"; \
> if command -v jq >/dev/null 2>&1; then TOKEN_VAL="$$(printf "%s" "$$RESP" | jq -r '.access_token // empty')"; else TOKEN_VAL="$$(printf "%s" "$$RESP" | sed -n 's/.*"access_token"[[:space:]]*:[[:space:]]*"\([^"]*\)".*/\1/p')"; fi; \
> if [ -z "$$TOKEN_VAL" ]; then echo "Failed to extract token. Raw response:"; echo "$$RESP"; exit 2; fi; \
> printf "%s\n" "$$TOKEN_VAL" > $(TOKEN_FILE); \
> echo "Token saved to $(TOKEN_FILE)"; \
> echo "$$TOKEN_VAL"; \
> echo ""; \
> echo "To use it in this shell, run:"; \
> echo "  export TOKEN=$$TOKEN_VAL"

# Optional helper to reuse saved token
.PHONY: use-token
use-token:
> if [ ! -s $(TOKEN_FILE) ]; then echo "$(TOKEN_FILE) not found. Run 'make get-token' first."; exit 1; fi
> echo "Run this to export into your shell:"
> echo "  export TOKEN=$$(cat $(TOKEN_FILE))"

# ---------- Seeding ----------
.PHONY: seed-db

seed-db:
> set -eu pipefail; \
> # 1) Resolve TOKEN or exit
> if [ -z "${TOKEN:-}" ]; then \
>   if [ -s "$(TOKEN_FILE)" ]; then TOKEN="$$(cat "$(TOKEN_FILE)")"; \
>   else echo "Set TOKEN or run 'make get-token' first"; exit 1; fi; \
> else TOKEN="$(TOKEN)"; fi; \
> echo "Seeding Patients ..."; \
> curl -sS -X POST $(API)/patient/ -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"patient_id":101,"patient_lastname":"Silva","patient_firstname":"Ana","patient_middlename":null,"patient_gender":"F","patient_birthdate":"1984-05-12","patient_email":"ana.silva@example.org","patient_address":"Rua de Cedofeita 123, Porto","patient_phone":"+351992000001","patient_bmi":24.1,"patient_height":165.0,"patient_weight":65.6,"patient_anamnesis":"Lack of memory"}'; \
> curl -sS -X POST $(API)/patient/ -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"patient_id":102,"patient_lastname":"Martins","patient_firstname":"Rui","patient_middlename":"Miguel","patient_gender":"M","patient_birthdate":"1976-11-02","patient_email":"rui.martins@example.org","patient_address":"Av. Boavista 2500, Porto","patient_phone":"+351992000002","patient_bmi":27.4,"patient_height":175.0,"patient_weight":84.0}'; \
> curl -sS -X POST $(API)/patient/ -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"patient_id":103,"patient_lastname":"Rodrigues","patient_firstname":"Carla","patient_middlename":null,"patient_gender":"F","patient_birthdate":"1990-03-22","patient_email":"carla.rod@example.org","patient_address":null,"patient_phone":"+351992000003","patient_bmi":21.9,"patient_height":168.0,"patient_weight":61.9}'; \
> curl -sS -X POST $(API)/patient/ -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"patient_id":104,"patient_lastname":"Oliveira","patient_firstname":"Joao","patient_middlename":null,"patient_gender":"M","patient_birthdate":"1959-08-10","patient_email":"joao.oliveira@example.org","patient_address":"Rua de Santa Catarina, Porto","patient_phone":"+351992000004","patient_bmi":29.2,"patient_height":172.0,"patient_weight":86.5}'; \
> curl -sS -X POST $(API)/patient/ -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"patient_id":105,"patient_lastname":"Sousa","patient_firstname":"Marta","patient_middlename":"Inês","patient_gender":"F","patient_birthdate":"1971-02-14","patient_email":"marta.sousa@example.org","patient_address":"Rua do Almada 45, Porto","patient_phone":"+351992000005","patient_bmi":31.0,"patient_height":160.0,"patient_weight":79.4}'; \
> curl -sS -X POST $(API)/patient/ -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"patient_id":106,"patient_lastname":"Ferreira","patient_firstname":"Pedro","patient_middlename":null,"patient_gender":"M","patient_birthdate":"1982-12-01","patient_email":"pedro.ferreira@example.org","patient_address":null,"patient_phone":"+351992000006","patient_bmi":23.5,"patient_height":181.0,"patient_weight":77.0}'; \
> curl -sS -X POST $(API)/patient/ -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"patient_id":107,"patient_lastname":"Gomes","patient_firstname":"Sofia","patient_middlename":null,"patient_gender":"F","patient_birthdate":"2001-07-30","patient_email":"sofia.gomes@example.org","patient_address":"Vila Nova de Gaia","patient_phone":"+351992000007","patient_bmi":20.0,"patient_height":170.0,"patient_weight":57.8}'; \
> curl -sS -X POST $(API)/patient/ -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"patient_id":108,"patient_lastname":"Costa","patient_firstname":"Nuno","patient_middlename":null,"patient_gender":"M","patient_birthdate":"1946-01-20","patient_email":"nuno.costa@example.org","patient_address":"Matosinhos","patient_phone":"+351992000008","patient_bmi":28.4,"patient_height":169.0,"patient_weight":81.2,"patient_anamnesis":"Chronic pain"}'; \
> curl -sS -X POST $(API)/patient/ -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"patient_id":109,"patient_lastname":"Pereira","patient_firstname":"Helena","patient_middlename":"Maria","patient_gender":"F","patient_birthdate":"1995-09-09","patient_email":"helena.pereira@example.org","patient_address":"Braga","patient_phone":"+351992000009","patient_bmi":22.3,"patient_height":167.0,"patient_weight":62.3}'; \
> curl -sS -X POST $(API)/patient/ -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"patient_id":110,"patient_lastname":"Carvalho","patient_firstname":"Miguel","patient_middlename":null,"patient_gender":"M","patient_birthdate":"1978-04-05","patient_email":"miguel.carvalho@example.org","patient_address":"Porto","patient_phone":"+351992000010","patient_bmi":26.0,"patient_height":178.0,"patient_weight":82.4}'; \
> echo "Seeding Procedures ..."; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":2534,"procedure_description":"PR2534 - HIP Arthroplasty - Right Hip","procedure_department":"Orthopaedics and Trauma","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":2536,"procedure_description":"PR2536 - Knee Arthroplasty - Right Knee","procedure_department":"Orthopaedics and Trauma","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":5856,"procedure_description":"PR5856 - Heart Surgery - Coronary bypass","procedure_department":"Cardiology","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":3001,"procedure_description":"PR3001 - Brain MRI with contrast","procedure_department":"Radiology","procedure_type":"Imagiology"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":3002,"procedure_description":"PR3002 - CT Abdomen/Pelvis","procedure_department":"Radiology","procedure_type":"Imagiology"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":3003,"procedure_description":"PR3003 - Chest X-Ray (PA/Lateral)","procedure_department":"Radiology","procedure_type":"Imagiology"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":3004,"procedure_description":"PR3004 - Ultrasound Doppler - Lower Limb","procedure_department":"Radiology","procedure_type":"Imagiology"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":3005,"procedure_description":"PR3005 - PET-CT Whole-body","procedure_department":"Radiology","procedure_type":"Imagiology"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":4001,"procedure_description":"PR4001 - EMG/NCS - Upper limb","procedure_department":"Neurology","procedure_type":"Ambulatory"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":4002,"procedure_description":"PR4002 - EEG - Routine","procedure_department":"Neurology","procedure_type":"Ambulatory"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":4003,"procedure_description":"PR4003 - Lumbar Puncture","procedure_department":"Neurology","procedure_type":"Ambulatory"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":5001,"procedure_description":"PR5001 - Synovial fluid analysis - Knee","procedure_department":"Rheumatology","procedure_type":"Analysis"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":5002,"procedure_description":"PR5002 - Rheumatoid factor (RF) & anti-CCP","procedure_department":"Rheumatology","procedure_type":"Analysis"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":5003,"procedure_description":"PR5003 - Intra-articular corticosteroid injection","procedure_department":"Rheumatology","procedure_type":"Ambulatory"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":6001,"procedure_description":"PR6001 - Muscle strength rehabilitation session","procedure_department":"Physiatry","procedure_type":"Ambulatory"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":6002,"procedure_description":"PR6002 - Gait training with assistive devices","procedure_department":"Physiatry","procedure_type":"Ambulatory"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":6003,"procedure_description":"PR6003 - Spasticity management (BoNT-A)","procedure_department":"Physiatry","procedure_type":"Ambulatory"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":7001,"procedure_description":"PR7001 - Core needle biopsy - Breast","procedure_department":"Anatomical Pathology","procedure_type":"Biopsy"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":7002,"procedure_description":"PR7002 - Colonoscopic mucosal biopsy","procedure_department":"Anatomical Pathology","procedure_type":"Biopsy"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":8001,"procedure_description":"PR8001 - CBC + Differential","procedure_department":"Laboratory","procedure_type":"Analysis"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":8002,"procedure_description":"PR8002 - Comprehensive Metabolic Panel","procedure_department":"Laboratory","procedure_type":"Analysis"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":8003,"procedure_description":"PR8003 - HbA1c","procedure_department":"Laboratory","procedure_type":"Analysis"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":8004,"procedure_description":"PR8004 - Lipid Profile","procedure_department":"Laboratory","procedure_type":"Analysis"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":8005,"procedure_description":"PR8005 - CRP / ESR","procedure_department":"Laboratory","procedure_type":"Analysis"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":2601,"procedure_description":"PR2601 - Total Hip Arthroplasty - Left Hip","procedure_department":"Orthopaedics and Trauma","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":2602,"procedure_description":"PR2602 - Revision Total Hip Arthroplasty","procedure_department":"Orthopaedics and Trauma","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":2603,"procedure_description":"PR2603 - Hemiarthroplasty - Hip (Neck of Femur Fracture)","procedure_department":"Orthopaedics and Trauma","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":2604,"procedure_description":"PR2604 - Total Shoulder Arthroplasty","procedure_department":"Orthopaedics and Trauma","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":2605,"procedure_description":"PR2605 - Reverse Shoulder Arthroplasty","procedure_department":"Orthopaedics and Trauma","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":2606,"procedure_description":"PR2606 - ACL Reconstruction with Hamstring Autograft","procedure_department":"Orthopaedics and Trauma","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":2607,"procedure_description":"PR2607 - Arthroscopic Meniscal Repair","procedure_department":"Orthopaedics and Trauma","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":2608,"procedure_description":"PR2608 - Rotator Cuff Repair (Arthroscopic)","procedure_department":"Orthopaedics and Trauma","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":2609,"procedure_description":"PR2609 - Lumbar Laminectomy and Decompression (L4–L5)","procedure_department":"Orthopaedics and Trauma","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":2610,"procedure_description":"PR2610 - Posterior Lumbar Interbody Fusion (PLIF) L4–L5","procedure_department":"Orthopaedics and Trauma","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":2611,"procedure_description":"PR2611 - ORIF Femoral Shaft Fracture","procedure_department":"Orthopaedics and Trauma","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":2612,"procedure_description":"PR2612 - ORIF Distal Radius Fracture","procedure_department":"Orthopaedics and Trauma","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":2613,"procedure_description":"PR2613 - Intramedullary Nailing of Tibial Shaft Fracture","procedure_department":"Orthopaedics and Trauma","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":2614,"procedure_description":"PR2614 - Ankle ORIF (Bimalleolar)","procedure_department":"Orthopaedics and Trauma","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":2615,"procedure_description":"PR2615 - Carpal Tunnel Release","procedure_department":"Orthopaedics and Trauma","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":5860,"procedure_description":"PR5860 - Aortic Valve Replacement (Mechanical)","procedure_department":"Cardiology","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":5861,"procedure_description":"PR5861 - Aortic Valve Replacement (Bioprosthetic)","procedure_department":"Cardiology","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":5862,"procedure_description":"PR5862 - Mitral Valve Repair (Annuloplasty)","procedure_department":"Cardiology","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":5863,"procedure_description":"PR5863 - Mitral Valve Replacement (Bioprosthetic)","procedure_department":"Cardiology","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":5864,"procedure_description":"PR5864 - CABG x3 (Triple Vessel Coronary Artery Bypass)","procedure_department":"Cardiology","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":5865,"procedure_description":"PR5865 - Aortic Root Replacement (Bentall Procedure)","procedure_department":"Cardiology","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":5866,"procedure_description":"PR5866 - Ascending Aortic Aneurysm Repair","procedure_department":"Cardiology","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":5867,"procedure_description":"PR5867 - Left Ventricular Assist Device (LVAD) Implantation","procedure_department":"Cardiology","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":5868,"procedure_description":"PR5868 - Orthotopic Heart Transplantation","procedure_department":"Cardiology","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":5869,"procedure_description":"PR5869 - Cox-Maze Procedure for Atrial Fibrillation","procedure_department":"Cardiology","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":5870,"procedure_description":"PR5870 - Pericardiectomy (Constrictive Pericarditis)","procedure_department":"Cardiology","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":5871,"procedure_description":"PR5871 - Left Atrial Appendage Ligation (Surgical)","procedure_department":"Cardiology","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":5872,"procedure_description":"PR5872 - Atrial Septal Defect (ASD) Surgical Repair","procedure_department":"Cardiology","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":5873,"procedure_description":"PR5873 - Ventricular Septal Defect (VSD) Surgical Repair","procedure_department":"Cardiology","procedure_type":"Surgery"}'; \
> curl -sS -X POST $(API)/procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"procedure_id":5874,"procedure_description":"PR5874 - Tricuspid Valve Repair","procedure_department":"Cardiology","procedure_type":"Surgery"}'; \
> echo "Seeding Recommendations ..."; \
> curl -sS -X POST $(API)/recommendation -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"recommendation_id":"abc-456","recommendation_description":"Physical Therapy"}'; \
> curl -sS -X POST $(API)/recommendation -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"recommendation_id":"wmp-789","recommendation_description":"Weight Management Program"}'; \
> curl -sS -X POST $(API)/recommendation -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"recommendation_id":"por-123","recommendation_description":"Post-Op Rehabilitation Plan"}'; \
> echo "Seeding Patient_Procedures ..."; \
> curl -sS -X POST $(API)/patient_procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"patient_procedure_id":9001,"patient_id":101,"procedure_id":3001,"procedure_datetime":"2025-05-14T10:30:00","procedure_report":"Radiology report: Brain MRI with contrast shows no acute infarct or mass effect. Mild nonspecific white matter changes."}'; \
> curl -sS -X POST $(API)/patient_procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"patient_procedure_id":9002,"patient_id":101,"procedure_id":8001,"procedure_datetime":"2025-05-10T08:15:00"}'; \
> curl -sS -X POST $(API)/patient_procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"patient_procedure_id":9003,"patient_id":102,"procedure_id":2536,"procedure_datetime":"2025-09-02T07:45:00","procedure_report":"Surgery report: Right total knee arthroplasty performed without complications. Estimated blood loss 200 ml."}'; \
> curl -sS -X POST $(API)/patient_procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"patient_procedure_id":9012,"patient_id":108,"procedure_id":2536,"procedure_datetime":"2025-10-02T07:45:00","procedure_report":"Surgery report: Right total knee arthroplasty performed without complications. Estimated blood loss 500 ml."}'; \
> curl -sS -X POST $(API)/patient_procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"patient_procedure_id":9004,"patient_id":103,"procedure_id":7001,"procedure_datetime":"2025-06-22T13:00:00","procedure_report":"Pathology report: Core needle biopsy of breast lesion reveals benign fibrocystic changes. No malignancy identified."}'; \
> curl -sS -X POST $(API)/patient_procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"patient_procedure_id":9005,"patient_id":104,"procedure_id":5856,"procedure_datetime":"2025-03-11T06:30:00","procedure_report":"Surgery report: CABG x3 grafts (LIMA-LAD, SVG-OM, SVG-PDA). Stable hemodynamics on transfer to ICU."}'; \
> curl -sS -X POST $(API)/patient_procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"patient_procedure_id":9006,"patient_id":105,"procedure_id":8005,"procedure_datetime":"2025-07-03T09:00:00","procedure_report":null}'; \
> curl -sS -X POST $(API)/patient_procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"patient_procedure_id":9007,"patient_id":106,"procedure_id":4002,"procedure_datetime":"2025-02-18T15:30:00","procedure_report":"Neurology report: Routine EEG within normal limits. No epileptiform discharges recorded."}'; \
> curl -sS -X POST $(API)/patient_procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"patient_procedure_id":9008,"patient_id":107,"procedure_id":6001,"procedure_datetime":"2025-09-05T11:00:00","procedure_report":"Physiatry note: Progressive resistance exercises; tolerated well. Plan: increase load by 10% next session."}'; \
> curl -sS -X POST $(API)/patient_procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"patient_procedure_id":9009,"patient_id":108,"procedure_id":3002,"procedure_datetime":"2025-08-19T12:20:00","procedure_report":"Radiology report: CT Abdomen/Pelvis shows sigmoid diverticulosis without signs of acute inflammation."}'; \
> curl -sS -X POST $(API)/patient_procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"patient_procedure_id":9010,"patient_id":109,"procedure_id":7002,"procedure_datetime":"2025-07-21T10:10:00","procedure_report":"Pathology report: Colon mucosal biopsies with chronic inflammatory changes; no dysplasia."}'; \
> curl -sS -X POST $(API)/patient_procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"patient_procedure_id":9011,"patient_id":110,"procedure_id":3003,"procedure_datetime":"2025-05-29T16:40:00","procedure_report":"Radiology report: No focal consolidation. Cardiomediastinal silhouette within normal limits."}'; \
> curl -sS -X POST $(API)/patient_procedure -H "Authorization: Bearer $$TOKEN" -H "Content-Type: application/json" -d '{"patient_procedure_id":9013,"patient_id":110,"procedure_id":8004,"procedure_datetime":"2025-05-29T08:05:00"}'; \
> echo "Done."

# -------- Testing ------------
.PHONY: eval-patient
eval-patient:
> if [ -z "$(TOKEN)" ]; then if [ -s $(TOKEN_FILE) ]; then TOKEN="$$(cat $(TOKEN_FILE))"; else echo "Set TOKEN or run 'make get-token' first"; exit 1; fi; else TOKEN="$(TOKEN)"; fi; \
> if [ -z "$(PATIENT_ID)" ]; then echo "Usage: make eval-patient PATIENT_ID=<id>"; exit 1; fi; \
> if [ -z "$(TOKEN)" ]; then if [ -s $(TOKEN_FILE) ]; then TOKEN="$$(cat $(TOKEN_FILE))"; else echo "Set TOKEN or run 'make get-token' first"; exit 1; fi; else TOKEN="$(TOKEN)"; fi; \
> echo "Evaluating patient $(PATIENT_ID) ..."; \
> curl -sS -X POST $(API)/evaluate/$(PATIENT_ID) -H "Authorization: Bearer $$TOKEN" | jq .

.PHONY: get-recom
get-recom:
> if [ -z "$(TOKEN)" ]; then if [ -s $(TOKEN_FILE) ]; then TOKEN="$$(cat $(TOKEN_FILE))"; else echo "Set TOKEN or run 'make get-token' first"; exit 1; fi; else TOKEN="$(TOKEN)"; fi; \
> if [ -z "$(PATIENT_ID)" ]; then echo "Usage: make get-recom PATIENT_ID=<id>"; exit 1; fi; \
> if [ -z "$(TOKEN)" ]; then if [ -s $(TOKEN_FILE) ]; then TOKEN="$$(cat $(TOKEN_FILE))"; else echo "Set TOKEN or run 'make get-token' first"; exit 1; fi; else TOKEN="$(TOKEN)"; fi; \
> echo "Getting recommendations for patient $(PATIENT_ID) ..."; \
> curl -sS -X GET "$(API)/patient_recommendations?patient_id=$(PATIENT_ID)&expand=recommendations" -H "Authorization: Bearer $$TOKEN" | jq .

# ---------- Packaging ----------
.PHONY: build-pkg install-pkg editable clean-pkg clean clean-logs
build-pkg: schema
> rm -rf build/ dist/ *.egg-info/
> $(PY) -m pip install -U build
> $(PY) -m build

install-pkg: build-pkg
> $(PIP) install dist/*.whl

editable:
> $(PIP) install -e .[dev]

clean-pkg:
> rm -rf build/ dist/ *.egg-info/

clean:
> find . -name '__pycache__' -type d -prune -exec rm -rf {} +
> find . -name '*.pyc' -delete
> rm -rf .pytest_cache

clean-logs:
> rm -f logs/*.log logs/*.ndjson || true