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Push on main CodeQL #74: by Psy-Fer
4m 39s main
main
4m 39s
Port STAR's WithinBAM output (supersedes #282); PE nM is the pair's CI #716: Pull request #307 opened by Psy-Fer
6m 29s batch/within-bam
batch/within-bam
6m 29s
PR #307 CodeQL #73: by Psy-Fer
2m 46s refs/pull/307/head
refs/pull/307/head
2m 46s
fix(sam): write optional tags in --outSAMattributes order, as STAR (and STAR's fixed unmapped / quant tag sets) CI #715: Pull request #306 opened by BenjaminDEMAILLE
13m 57s fix/sam-attribute-order
fix/sam-attribute-order
13m 57s
PR #306 CodeQL #72: by BenjaminDEMAILLE
7m 39s refs/pull/306/head
refs/pull/306/head
7m 39s
fix(align): a soft-clipped variant of a pair is not a second locus CI #714: Pull request #254 synchronize by BenjaminDEMAILLE
10m 9s fix/pair-subset-loci
fix/pair-subset-loci
10m 9s
PR #254 CodeQL #71: by BenjaminDEMAILLE
10m 35s refs/pull/254/head
refs/pull/254/head
10m 35s
genome: --genomeType SuperTranscriptome CI #713: Pull request #161 synchronize by BenjaminDEMAILLE
12m 32s BenjaminDEMAILLE:bd/genome-supertranscriptome
BenjaminDEMAILLE:bd/genome-supertranscriptome
12m 32s
clip: CellRanger4 3' poly-A trim CI #712: Pull request #148 synchronize by BenjaminDEMAILLE
16m 48s BenjaminDEMAILLE:bd/clip-cellranger4
BenjaminDEMAILLE:bd/clip-cellranger4
16m 48s
feat: STARlong binary + long-read window-coverage filter CI #711: Pull request #116 synchronize by BenjaminDEMAILLE
18m 45s BenjaminDEMAILLE:bd/starlong
BenjaminDEMAILLE:bd/starlong
18m 45s
integrate hyalite v0.2.0 for CellRanger4 CI #710: Pull request #198 synchronize by BenjaminDEMAILLE
19m 26s feat/cr4-clip-hyalite
feat/cr4-clip-hyalite
19m 26s
PR #198 CodeQL #70: by BenjaminDEMAILLE
15m 52s refs/pull/198/head
refs/pull/198/head
15m 52s
feat(params): accept --outSAMtype BAM Unsorted SortedByCoordinate (both BAM outputs), outStd routed per output as STAR CI #709: Pull request #305 opened by BenjaminDEMAILLE
18m 31s fix/bam-unsorted-and-sorted
fix/bam-unsorted-and-sorted
18m 31s
PR #305 CodeQL #69: by BenjaminDEMAILLE
11m 45s refs/pull/305/head
refs/pull/305/head
11m 45s
fix(sam): STAR's header text, from @HD VN:1.4 to the @CO command line CI #708: Pull request #297 synchronize by BenjaminDEMAILLE
22m 32s fix/sam-hd-version
fix/sam-hd-version
22m 32s
PR #297 CodeQL #68: by BenjaminDEMAILLE
16m 30s refs/pull/297/head
refs/pull/297/head
16m 30s
fix(align): STAR's window formation and per-window dedup for long splices CI #707: Pull request #304 synchronize by BenjaminDEMAILLE
19m 8s fix/window-formation-long-introns
fix/window-formation-long-introns
19m 8s
fix(align): never stitch same-diagonal seeds; port STAR's PE junction consistency walk CI #706: Pull request #301 synchronize by BenjaminDEMAILLE
24m 29s fix/pe-junction-walk-same-diagonal
fix/pe-junction-walk-same-diagonal
24m 29s
fix(align): STAR's seed-overlap order, insertion with overlapping seeds, sjdb overhang per side CI #705: Pull request #302 synchronize by BenjaminDEMAILLE
21m 14s fix/stitch-seed-overlap-insertions
fix/stitch-seed-overlap-insertions
21m 14s
fix(align): STAR's seed-overlap order, insertion with overlapping seeds, sjdb overhang per side CI #704: Pull request #302 synchronize by BenjaminDEMAILLE
31s fix/stitch-seed-overlap-insertions
fix/stitch-seed-overlap-insertions
31s
fix(align): stitch annotated junctions like STAR; drop covered PE sub-alignments CI #703: Pull request #295 synchronize by BenjaminDEMAILLE
15m 42s fix/sjdb-short-overhang
fix/sjdb-short-overhang
15m 42s
PR #295 CodeQL #67: by BenjaminDEMAILLE
7m 51s refs/pull/295/head
refs/pull/295/head
7m 51s
feat(degnorm): DegNorm-style transcript degradation normalization CI #702: Pull request #232 synchronize by BenjaminDEMAILLE
13m 45s feat/degnorm
feat/degnorm
13m 45s
PR #232 CodeQL #66: by BenjaminDEMAILLE
17m 9s refs/pull/232/head
refs/pull/232/head
17m 9s
feat(degnorm): DegNorm-style transcript degradation normalization CI #701: Pull request #232 synchronize by BenjaminDEMAILLE
4m 1s feat/degnorm
feat/degnorm
4m 1s