From 6e932353ef2a15d774b41fc1e26119a678b15409 Mon Sep 17 00:00:00 2001
From: GlebRysev-UKKA <gleb.rysev@ukkidney.org>
Date: Tue, 9 Dec 2025 11:01:59 +0000
Subject: [PATCH 01/20] feat: rewrite delete function

---
 ukrr_models/utils.py | 78 ++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 78 insertions(+)
 create mode 100644 ukrr_models/utils.py

diff --git a/ukrr_models/utils.py b/ukrr_models/utils.py
new file mode 100644
index 0000000..fb8b656
--- /dev/null
+++ b/ukrr_models/utils.py
@@ -0,0 +1,78 @@
+import datetime as dt
+from typing import Optional, Iterable
+
+from sqlalchemy import select
+from sqlalchemy.orm import Session
+from sqlalchemy import func, cast, Date
+from sqlalchemy.exc import SQLAlchemyError
+
+from ukrr_models.rr_models import UKRRPatient, UKRR_Deleted_Patient
+
+
+def audit_date_expression():
+    return cast(func.getdate(), Date)
+
+def audit_time_expression():
+    return func.concat(
+        func.datepart("hour", func.getdate()),
+        func.datepart("minute", func.getdate()),
+    )
+
+class DeletePatientError(Exception):
+    pass
+
+def delete_patient(
+    session: Session,
+    rrno: str,
+    username: str,
+    authorised_by: str,
+    reason: str,
+    duplicate_rrno: Optional[str] = None,
+):
+    """Delete a patient."""
+    print(f"Deleting {rrno}...")
+    
+    patient = session.scalar(
+        select(UKRRPatient).where(UKRRPatient.rr_no == rrno)
+    )
+    
+    if patient is None:
+        raise DeletePatientError(f"Patient (RR_NO={rrno}) not found")
+    
+    # Find list of columns we need to copy from PATIENTS to DELETED_PATIENTS
+    patient_columns = {c.key for c in UKRRPatient.__table__.columns}
+    deleted_patient_columns = {c.key for c in UKRR_Deleted_Patient.__table__.columns}
+    shared_cols = patient_columns & deleted_patient_columns
+    
+    print("Adding %s to DELETED_PATIENTS..." % rrno)
+    
+    patinet_params: dict[str, object] = {col: getattr(patient, col) for col in shared_cols}
+    
+    patinet_params.update(
+        {
+            "USERNAME": username,
+            "AUTHORISED_BY": authorised_by,
+            "DESCRIPTION": reason,
+            "DUPLICATE_RR_NO": duplicate_rrno,
+        }
+    )
+    
+    deleted_patient_params = {
+        key: value
+        for key, value in patinet_params.items()
+        if key in deleted_patient_columns
+    }
+    
+    deleted_patient = UKRR_Deleted_Patient(**deleted_patient_params)
+    deleted_patient.AUDIT_DATE = audit_date_expression()
+    delete_patient.AUDIT_TIME = audit_time_expression()
+    
+    try:
+        session.add(deleted_patient)
+        session.delete(patient)
+        session.commit()
+    except SQLAlchemyError:
+        session.rollback()
+        raise DeletePatientError(f"Error adding patient (RR_NO={rrno}) to DELETED_PATIENTS")
+    
+    print(f"Deleted {rrno}")
\ No newline at end of file

From 6367bd1c0b106b93cc1c3ac173acda84d98ba5ed Mon Sep 17 00:00:00 2001
From: GlebRysev-UKKA <gleb.rysev@ukkidney.org>
Date: Tue, 9 Dec 2025 11:09:26 +0000
Subject: [PATCH 02/20] feat: add audit date/time to deleted patient model

---
 ukrr_models/rr_models.py | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/ukrr_models/rr_models.py b/ukrr_models/rr_models.py
index a7770a9..612e03d 100644
--- a/ukrr_models/rr_models.py
+++ b/ukrr_models/rr_models.py
@@ -201,7 +201,11 @@ class UKRR_Deleted_Patient(Base):
 
     DATE_DEATH: Mapped[str] = mapped_column(Date)
     date_death: Mapped[str] = synonym("DATE_DEATH")
-
+    
+    AUDIT_DATE: Mapped[Optional[datetime]] = mapped_column(DateTime)
+    audit_date: Mapped[Optional[datetime]] = synonym("AUDIT_DATE")
+    AUDIT_TIME: Mapped[Optional[int]] = mapped_column(Numeric(8, 0))
+    audit_time: Mapped[Optional[datetime]] = synonym("AUDIT_TIME")
 
 class QuarterlyTreatment(Base):
     __tablename__ = "QUARTERLY_TREATMENT"

From 9c1e5f8aaf597069b7f9f805187773f1cea44303 Mon Sep 17 00:00:00 2001
From: GlebRysev-UKKA <gleb.rysev@ukkidney.org>
Date: Tue, 9 Dec 2025 15:14:17 +0000
Subject: [PATCH 03/20] feat: allow to run from CLI

---
 ukrr_models/utils.py | 28 +++++++++++++++++++++++++++-
 1 file changed, 27 insertions(+), 1 deletion(-)

diff --git a/ukrr_models/utils.py b/ukrr_models/utils.py
index fb8b656..cab8cf1 100644
--- a/ukrr_models/utils.py
+++ b/ukrr_models/utils.py
@@ -1,3 +1,4 @@
+import argparse
 import datetime as dt
 from typing import Optional, Iterable
 
@@ -5,6 +6,7 @@
 from sqlalchemy.orm import Session
 from sqlalchemy import func, cast, Date
 from sqlalchemy.exc import SQLAlchemyError
+from rr_database.sqlserver import SQLServerDatabase
 
 from ukrr_models.rr_models import UKRRPatient, UKRR_Deleted_Patient
 
@@ -75,4 +77,28 @@ def delete_patient(
         session.rollback()
         raise DeletePatientError(f"Error adding patient (RR_NO={rrno}) to DELETED_PATIENTS")
     
-    print(f"Deleted {rrno}")
\ No newline at end of file
+    print(f"Deleted {rrno}")
+    
+if __name__ == "__main__":
+    parser = argparse.ArgumentParser()
+
+    parser.add_argument("--rrno", required=True)
+    parser.add_argument("--username", required=True)
+    parser.add_argument("--authorised-by", required=True)
+    parser.add_argument("--reason", required=True)
+    parser.add_argument("--duplicate-rrno", required=False)
+    
+    args = parser.parse_args()
+    
+    database = SQLServerDatabase.connect(server="RR-SQL-Live", database="renalreg")
+    with database.session as session:
+        print(f"Deleting patient {args.rrno}, authorised by {args.authorised_by} for reason {args.reason}")
+        delete_patient(
+            session=session,
+            rrno=args.rrno,
+            username=args.username,
+            authorised_by=args.authorised_by,
+            reason=args.reason,
+            duplicate_rrno=args.duplicate_rrno,
+        )
+    
\ No newline at end of file

From ba4d494b9ab86e22cd05960deaaafd35d6aa0f1f Mon Sep 17 00:00:00 2001
From: GlebRysev-UKKA <gleb.rysev@ukkidney.org>
Date: Tue, 9 Dec 2025 15:14:23 +0000
Subject: [PATCH 04/20] build: deps

---
 poetry.lock    | 238 +++++++++++++++++++++++++++++++++++++++++++++++--
 pyproject.toml |   1 +
 2 files changed, 232 insertions(+), 7 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 0099ded..383d5d2 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,4 +1,4 @@
-# This file is automatically @generated by Poetry 1.8.5 and should not be changed by hand.
+# This file is automatically @generated by Poetry 2.2.1 and should not be changed by hand.
 
 [[package]]
 name = "bandit"
@@ -6,6 +6,7 @@ version = "1.7.9"
 description = "Security oriented static analyser for python code."
 optional = false
 python-versions = ">=3.8"
+groups = ["dev"]
 files = [
     {file = "bandit-1.7.9-py3-none-any.whl", hash = "sha256:52077cb339000f337fb25f7e045995c4ad01511e716e5daac37014b9752de8ec"},
     {file = "bandit-1.7.9.tar.gz", hash = "sha256:7c395a436743018f7be0a4cbb0a4ea9b902b6d87264ddecf8cfdc73b4f78ff61"},
@@ -21,7 +22,7 @@ stevedore = ">=1.20.0"
 baseline = ["GitPython (>=3.1.30)"]
 sarif = ["jschema-to-python (>=1.2.3)", "sarif-om (>=1.0.4)"]
 test = ["beautifulsoup4 (>=4.8.0)", "coverage (>=4.5.4)", "fixtures (>=3.0.0)", "flake8 (>=4.0.0)", "pylint (==1.9.4)", "stestr (>=2.5.0)", "testscenarios (>=0.5.0)", "testtools (>=2.3.0)"]
-toml = ["tomli (>=1.1.0)"]
+toml = ["tomli (>=1.1.0) ; python_version < \"3.11\""]
 yaml = ["PyYAML"]
 
 [[package]]
@@ -30,6 +31,7 @@ version = "5.5.0"
 description = "Extensible memoizing collections and decorators"
 optional = false
 python-versions = ">=3.7"
+groups = ["dev"]
 files = [
     {file = "cachetools-5.5.0-py3-none-any.whl", hash = "sha256:02134e8439cdc2ffb62023ce1debca2944c3f289d66bb17ead3ab3dede74b292"},
     {file = "cachetools-5.5.0.tar.gz", hash = "sha256:2cc24fb4cbe39633fb7badd9db9ca6295d766d9c2995f245725a46715d050f2a"},
@@ -41,6 +43,7 @@ version = "5.2.0"
 description = "Universal encoding detector for Python 3"
 optional = false
 python-versions = ">=3.7"
+groups = ["dev"]
 files = [
     {file = "chardet-5.2.0-py3-none-any.whl", hash = "sha256:e1cf59446890a00105fe7b7912492ea04b6e6f06d4b742b2c788469e34c82970"},
     {file = "chardet-5.2.0.tar.gz", hash = "sha256:1b3b6ff479a8c414bc3fa2c0852995695c4a026dcd6d0633b2dd092ca39c1cf7"},
@@ -52,6 +55,7 @@ version = "0.4.6"
 description = "Cross-platform colored terminal text."
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
+groups = ["dev"]
 files = [
     {file = "colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"},
     {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"},
@@ -63,6 +67,7 @@ version = "0.3.8"
 description = "Distribution utilities"
 optional = false
 python-versions = "*"
+groups = ["dev"]
 files = [
     {file = "distlib-0.3.8-py2.py3-none-any.whl", hash = "sha256:034db59a0b96f8ca18035f36290806a9a6e6bd9d1ff91e45a7f172eb17e51784"},
     {file = "distlib-0.3.8.tar.gz", hash = "sha256:1530ea13e350031b6312d8580ddb6b27a104275a31106523b8f123787f494f64"},
@@ -74,6 +79,8 @@ version = "1.2.2"
 description = "Backport of PEP 654 (exception groups)"
 optional = false
 python-versions = ">=3.7"
+groups = ["dev"]
+markers = "python_version < \"3.11\""
 files = [
     {file = "exceptiongroup-1.2.2-py3-none-any.whl", hash = "sha256:3111b9d131c238bec2f8f516e123e14ba243563fb135d3fe885990585aa7795b"},
     {file = "exceptiongroup-1.2.2.tar.gz", hash = "sha256:47c2edf7c6738fafb49fd34290706d1a1a2f4d1c6df275526b62cbb4aa5393cc"},
@@ -88,6 +95,7 @@ version = "3.16.0"
 description = "A platform independent file lock."
 optional = false
 python-versions = ">=3.8"
+groups = ["dev"]
 files = [
     {file = "filelock-3.16.0-py3-none-any.whl", hash = "sha256:f6ed4c963184f4c84dd5557ce8fece759a3724b37b80c6c4f20a2f63a4dc6609"},
     {file = "filelock-3.16.0.tar.gz", hash = "sha256:81de9eb8453c769b63369f87f11131a7ab04e367f8d97ad39dc230daa07e3bec"},
@@ -96,7 +104,7 @@ files = [
 [package.extras]
 docs = ["furo (>=2024.8.6)", "sphinx (>=8.0.2)", "sphinx-autodoc-typehints (>=2.4)"]
 testing = ["covdefaults (>=2.3)", "coverage (>=7.6.1)", "diff-cover (>=9.1.1)", "pytest (>=8.3.2)", "pytest-asyncio (>=0.24)", "pytest-cov (>=5)", "pytest-mock (>=3.14)", "pytest-timeout (>=2.3.1)", "virtualenv (>=20.26.3)"]
-typing = ["typing-extensions (>=4.12.2)"]
+typing = ["typing-extensions (>=4.12.2) ; python_version < \"3.11\""]
 
 [[package]]
 name = "greenlet"
@@ -104,6 +112,8 @@ version = "3.0.3"
 description = "Lightweight in-process concurrent programming"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "python_version < \"3.13\" and (platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\")"
 files = [
     {file = "greenlet-3.0.3-cp310-cp310-macosx_11_0_universal2.whl", hash = "sha256:9da2bd29ed9e4f15955dd1595ad7bc9320308a3b766ef7f837e23ad4b4aac31a"},
     {file = "greenlet-3.0.3-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:d353cadd6083fdb056bb46ed07e4340b0869c305c8ca54ef9da3421acbdf6881"},
@@ -175,6 +185,7 @@ version = "2.0.0"
 description = "brain-dead simple config-ini parsing"
 optional = false
 python-versions = ">=3.7"
+groups = ["dev"]
 files = [
     {file = "iniconfig-2.0.0-py3-none-any.whl", hash = "sha256:b6a85871a79d2e3b22d2d1b94ac2824226a63c6b741c88f7ae975f18b6778374"},
     {file = "iniconfig-2.0.0.tar.gz", hash = "sha256:2d91e135bf72d31a410b17c16da610a82cb55f6b0477d1a902134b24a455b8b3"},
@@ -186,6 +197,7 @@ version = "3.0.0"
 description = "Python port of markdown-it. Markdown parsing, done right!"
 optional = false
 python-versions = ">=3.8"
+groups = ["dev"]
 files = [
     {file = "markdown-it-py-3.0.0.tar.gz", hash = "sha256:e3f60a94fa066dc52ec76661e37c851cb232d92f9886b15cb560aaada2df8feb"},
     {file = "markdown_it_py-3.0.0-py3-none-any.whl", hash = "sha256:355216845c60bd96232cd8d8c40e8f9765cc86f46880e43a8fd22dc1a1a8cab1"},
@@ -210,6 +222,7 @@ version = "0.1.2"
 description = "Markdown URL utilities"
 optional = false
 python-versions = ">=3.7"
+groups = ["dev"]
 files = [
     {file = "mdurl-0.1.2-py3-none-any.whl", hash = "sha256:84008a41e51615a49fc9966191ff91509e3c40b939176e643fd50a5c2196b8f8"},
     {file = "mdurl-0.1.2.tar.gz", hash = "sha256:bb413d29f5eea38f31dd4754dd7377d4465116fb207585f97bf925588687c1ba"},
@@ -221,6 +234,7 @@ version = "1.11.2"
 description = "Optional static typing for Python"
 optional = false
 python-versions = ">=3.8"
+groups = ["dev"]
 files = [
     {file = "mypy-1.11.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:d42a6dd818ffce7be66cce644f1dff482f1d97c53ca70908dff0b9ddc120b77a"},
     {file = "mypy-1.11.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:801780c56d1cdb896eacd5619a83e427ce436d86a3bdf9112527f24a66618fef"},
@@ -268,6 +282,7 @@ version = "1.0.0"
 description = "Type system extensions for programs checked with the mypy type checker."
 optional = false
 python-versions = ">=3.5"
+groups = ["dev"]
 files = [
     {file = "mypy_extensions-1.0.0-py3-none-any.whl", hash = "sha256:4392f6c0eb8a5668a69e23d168ffa70f0be9ccfd32b5cc2d26a34ae5b844552d"},
     {file = "mypy_extensions-1.0.0.tar.gz", hash = "sha256:75dbf8955dc00442a438fc4d0666508a9a97b6bd41aa2f0ffe9d2f2725af0782"},
@@ -279,6 +294,7 @@ version = "24.1"
 description = "Core utilities for Python packages"
 optional = false
 python-versions = ">=3.8"
+groups = ["dev"]
 files = [
     {file = "packaging-24.1-py3-none-any.whl", hash = "sha256:5b8f2217dbdbd2f7f384c41c628544e6d52f2d0f53c6d0c3ea61aa5d1d7ff124"},
     {file = "packaging-24.1.tar.gz", hash = "sha256:026ed72c8ed3fcce5bf8950572258698927fd1dbda10a5e981cdf0ac37f4f002"},
@@ -290,6 +306,7 @@ version = "6.1.0"
 description = "Python Build Reasonableness"
 optional = false
 python-versions = ">=2.6"
+groups = ["dev"]
 files = [
     {file = "pbr-6.1.0-py2.py3-none-any.whl", hash = "sha256:a776ae228892d8013649c0aeccbb3d5f99ee15e005a4cbb7e61d55a067b28a2a"},
     {file = "pbr-6.1.0.tar.gz", hash = "sha256:788183e382e3d1d7707db08978239965e8b9e4e5ed42669bf4758186734d5f24"},
@@ -301,6 +318,7 @@ version = "4.3.2"
 description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`."
 optional = false
 python-versions = ">=3.8"
+groups = ["dev"]
 files = [
     {file = "platformdirs-4.3.2-py3-none-any.whl", hash = "sha256:eb1c8582560b34ed4ba105009a4badf7f6f85768b30126f351328507b2beb617"},
     {file = "platformdirs-4.3.2.tar.gz", hash = "sha256:9e5e27a08aa095dd127b9f2e764d74254f482fef22b0970773bfba79d091ab8c"},
@@ -317,6 +335,7 @@ version = "1.5.0"
 description = "plugin and hook calling mechanisms for python"
 optional = false
 python-versions = ">=3.8"
+groups = ["dev"]
 files = [
     {file = "pluggy-1.5.0-py3-none-any.whl", hash = "sha256:44e1ad92c8ca002de6377e165f3e0f1be63266ab4d554740532335b9d75ea669"},
     {file = "pluggy-1.5.0.tar.gz", hash = "sha256:2cffa88e94fdc978c4c574f15f9e59b7f4201d439195c3715ca9e2486f1d0cf1"},
@@ -332,6 +351,7 @@ version = "2.18.0"
 description = "Pygments is a syntax highlighting package written in Python."
 optional = false
 python-versions = ">=3.8"
+groups = ["dev"]
 files = [
     {file = "pygments-2.18.0-py3-none-any.whl", hash = "sha256:b8e6aca0523f3ab76fee51799c488e38782ac06eafcf95e7ba832985c8e7b13a"},
     {file = "pygments-2.18.0.tar.gz", hash = "sha256:786ff802f32e91311bff3889f6e9a86e81505fe99f2735bb6d60ae0c5004f199"},
@@ -340,12 +360,72 @@ files = [
 [package.extras]
 windows-terminal = ["colorama (>=0.4.6)"]
 
+[[package]]
+name = "pymssql"
+version = "2.3.10"
+description = "DB-API interface to Microsoft SQL Server for Python. (new Cython-based version)"
+optional = false
+python-versions = ">=3.9"
+groups = ["main"]
+files = [
+    {file = "pymssql-2.3.10-cp310-cp310-macosx_13_0_x86_64.whl", hash = "sha256:f3113def69009ff93b4a911819337ba34075a99eccdab64ae86feb363a9c3a39"},
+    {file = "pymssql-2.3.10-cp310-cp310-macosx_14_0_arm64.whl", hash = "sha256:4e81bc084d1f4f6a61d7a19f4ffe5b4f605a19da47e8b82b0b9492bac92dbe65"},
+    {file = "pymssql-2.3.10-cp310-cp310-manylinux2014_aarch64.manylinux_2_17_aarch64.whl", hash = "sha256:83cea5a3275b44fbfee8f98d042c21e06e4958ac84fa4ea0651aba631281ef6e"},
+    {file = "pymssql-2.3.10-cp310-cp310-manylinux2014_x86_64.manylinux_2_17_x86_64.whl", hash = "sha256:acf4d0a9365042d28ca3b0c650930fd160460d6f6260ff5236111a500ee9f335"},
+    {file = "pymssql-2.3.10-cp310-cp310-musllinux_1_2_aarch64.whl", hash = "sha256:04a9e3c8901b1bdac48f7d0b1805cba2a00c9925edf1e5706afd1f5e8920bd9b"},
+    {file = "pymssql-2.3.10-cp310-cp310-musllinux_1_2_x86_64.whl", hash = "sha256:2665bfba071554ec3a931bfc16ed04acf372ca5cf32a5b12af9ff20322ae22f5"},
+    {file = "pymssql-2.3.10-cp310-cp310-win32.whl", hash = "sha256:9fe40c418c95c1eb0762a970bc9d1059be8ab4fcc2b3fdd39adaed2543ea64bb"},
+    {file = "pymssql-2.3.10-cp310-cp310-win_amd64.whl", hash = "sha256:98346c847d4572e93e63a347772cde4eb27ccc084db4456045b9a3b09b1c464f"},
+    {file = "pymssql-2.3.10-cp311-cp311-macosx_13_0_x86_64.whl", hash = "sha256:ad6bb81cacca7fa9f9776561951d87181047c358aef13a00af51068171ea38a3"},
+    {file = "pymssql-2.3.10-cp311-cp311-macosx_14_0_arm64.whl", hash = "sha256:475a63eb9b7c9e4a41f13aa837bf4bb1f9f4611c0b2afee3a008e207ce8901b2"},
+    {file = "pymssql-2.3.10-cp311-cp311-manylinux2014_aarch64.manylinux_2_17_aarch64.whl", hash = "sha256:c7a5b39aea19ba1772f1c4ba43580522dc22e08cd649d441359ef88d0c79d19c"},
+    {file = "pymssql-2.3.10-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl", hash = "sha256:16857629c81e80f265a5dcc69b26fcf508e082a31fa86352895084a4d22f452d"},
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+    {file = "pywin32-308-cp313-cp313-win_amd64.whl", hash = "sha256:fd380990e792eaf6827fcb7e187b2b4b1cede0585e3d0c9e84201ec27b9905e4"},
+    {file = "pywin32-308-cp313-cp313-win_arm64.whl", hash = "sha256:ef313c46d4c18dfb82a2431e3051ac8f112ccee1a34f29c263c583c568db63cd"},
+    {file = "pywin32-308-cp37-cp37m-win32.whl", hash = "sha256:1f696ab352a2ddd63bd07430080dd598e6369152ea13a25ebcdd2f503a38f1ff"},
+    {file = "pywin32-308-cp37-cp37m-win_amd64.whl", hash = "sha256:13dcb914ed4347019fbec6697a01a0aec61019c1046c2b905410d197856326a6"},
+    {file = "pywin32-308-cp38-cp38-win32.whl", hash = "sha256:5794e764ebcabf4ff08c555b31bd348c9025929371763b2183172ff4708152f0"},
+    {file = "pywin32-308-cp38-cp38-win_amd64.whl", hash = "sha256:3b92622e29d651c6b783e368ba7d6722b1634b8e70bd376fd7610fe1992e19de"},
+    {file = "pywin32-308-cp39-cp39-win32.whl", hash = "sha256:7873ca4dc60ab3287919881a7d4f88baee4a6e639aa6962de25a98ba6b193341"},
+    {file = "pywin32-308-cp39-cp39-win_amd64.whl", hash = "sha256:71b3322d949b4cc20776436a9c9ba0eeedcbc9c650daa536df63f0ff111bb920"},
+]
+
 [[package]]
 name = "pyyaml"
 version = "6.0.2"
 description = "YAML parser and emitter for Python"
 optional = false
 python-versions = ">=3.8"
+groups = ["dev"]
 files = [
     {file = "PyYAML-6.0.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:0a9a2848a5b7feac301353437eb7d5957887edbf81d56e903999a75a3d743086"},
     {file = "PyYAML-6.0.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:29717114e51c84ddfba879543fb232a6ed60086602313ca38cce623c1d62cfbf"},
@@ -449,6 +629,7 @@ version = "13.8.0"
 description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal"
 optional = false
 python-versions = ">=3.7.0"
+groups = ["dev"]
 files = [
     {file = "rich-13.8.0-py3-none-any.whl", hash = "sha256:2e85306a063b9492dffc86278197a60cbece75bcb766022f3436f567cae11bdc"},
     {file = "rich-13.8.0.tar.gz", hash = "sha256:a5ac1f1cd448ade0d59cc3356f7db7a7ccda2c8cbae9c7a90c28ff463d3e91f4"},
@@ -461,12 +642,36 @@ pygments = ">=2.13.0,<3.0.0"
 [package.extras]
 jupyter = ["ipywidgets (>=7.5.1,<9)"]
 
+[[package]]
+name = "rr-database"
+version = "1.1.20"
+description = ""
+optional = false
+python-versions = ">=3.8"
+groups = ["main"]
+files = []
+develop = false
+
+[package.dependencies]
+pymssql = "^2.3.1"
+pyqt6 = "^6.0.0"
+pywin32 = "^308"
+sqlalchemy = "^2"
+sqlparams = "^6.1.0"
+
+[package.source]
+type = "git"
+url = "ssh://git@github.com/renalreg/rr_database.git"
+reference = "HEAD"
+resolved_reference = "f6bd6b03b7b63262285056eb3459e027b3bb22f5"
+
 [[package]]
 name = "ruff"
 version = "0.3.7"
 description = "An extremely fast Python linter and code formatter, written in Rust."
 optional = false
 python-versions = ">=3.7"
+groups = ["dev"]
 files = [
     {file = "ruff-0.3.7-py3-none-macosx_10_12_x86_64.macosx_11_0_arm64.macosx_10_12_universal2.whl", hash = "sha256:0e8377cccb2f07abd25e84fc5b2cbe48eeb0fea9f1719cad7caedb061d70e5ce"},
     {file = "ruff-0.3.7-py3-none-macosx_10_12_x86_64.whl", hash = "sha256:15a4d1cc1e64e556fa0d67bfd388fed416b7f3b26d5d1c3e7d192c897e39ba4b"},
@@ -493,6 +698,7 @@ version = "2.0.34"
 description = "Database Abstraction Library"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "SQLAlchemy-2.0.34-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:95d0b2cf8791ab5fb9e3aa3d9a79a0d5d51f55b6357eecf532a120ba3b5524db"},
     {file = "SQLAlchemy-2.0.34-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:243f92596f4fd4c8bd30ab8e8dd5965afe226363d75cab2468f2c707f64cd83b"},
@@ -574,12 +780,25 @@ postgresql-psycopgbinary = ["psycopg[binary] (>=3.0.7)"]
 pymysql = ["pymysql"]
 sqlcipher = ["sqlcipher3_binary"]
 
+[[package]]
+name = "sqlparams"
+version = "6.2.0"
+description = "Convert between various DB API 2.0 parameter styles."
+optional = false
+python-versions = ">=3.8"
+groups = ["main"]
+files = [
+    {file = "sqlparams-6.2.0-py3-none-any.whl", hash = "sha256:63b32ed9051bdc52e7e8b38bc4f78aed51796cdd9135e730f4c6a7db1048dedf"},
+    {file = "sqlparams-6.2.0.tar.gz", hash = "sha256:3744a2ad16f71293db6505b21fd5229b4757489a9b09f3553656a1ae97ba7ca5"},
+]
+
 [[package]]
 name = "stevedore"
 version = "5.3.0"
 description = "Manage dynamic plugins for Python applications"
 optional = false
 python-versions = ">=3.8"
+groups = ["dev"]
 files = [
     {file = "stevedore-5.3.0-py3-none-any.whl", hash = "sha256:1efd34ca08f474dad08d9b19e934a22c68bb6fe416926479ba29e5013bcc8f78"},
     {file = "stevedore-5.3.0.tar.gz", hash = "sha256:9a64265f4060312828151c204efbe9b7a9852a0d9228756344dbc7e4023e375a"},
@@ -594,6 +813,8 @@ version = "2.0.1"
 description = "A lil' TOML parser"
 optional = false
 python-versions = ">=3.7"
+groups = ["dev"]
+markers = "python_version < \"3.11\""
 files = [
     {file = "tomli-2.0.1-py3-none-any.whl", hash = "sha256:939de3e7a6161af0c887ef91b7d41a53e7c5a1ca976325f429cb46ea9bc30ecc"},
     {file = "tomli-2.0.1.tar.gz", hash = "sha256:de526c12914f0c550d15924c62d72abc48d6fe7364aa87328337a31007fe8a4f"},
@@ -605,6 +826,7 @@ version = "4.18.1"
 description = "tox is a generic virtualenv management and test command line tool"
 optional = false
 python-versions = ">=3.8"
+groups = ["dev"]
 files = [
     {file = "tox-4.18.1-py3-none-any.whl", hash = "sha256:35d472032ee1f73fe20c3e0e73d7073a4e85075c86ff02c576f9fc7c6a15a578"},
     {file = "tox-4.18.1.tar.gz", hash = "sha256:3c0c96bc3a568a5c7e66387a4cfcf8c875b52e09f4d47c9f7a277ec82f1a0b11"},
@@ -624,7 +846,7 @@ virtualenv = ">=20.26.3"
 
 [package.extras]
 docs = ["furo (>=2024.8.6)", "sphinx (>=8.0.2)", "sphinx-argparse-cli (>=1.17)", "sphinx-autodoc-typehints (>=2.4)", "sphinx-copybutton (>=0.5.2)", "sphinx-inline-tabs (>=2023.4.21)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=24.8)"]
-testing = ["build[virtualenv] (>=1.2.2)", "covdefaults (>=2.3)", "detect-test-pollution (>=1.2)", "devpi-process (>=1)", "diff-cover (>=9.1.1)", "distlib (>=0.3.8)", "flaky (>=3.8.1)", "hatch-vcs (>=0.4)", "hatchling (>=1.25)", "psutil (>=6)", "pytest (>=8.3.2)", "pytest-cov (>=5)", "pytest-mock (>=3.14)", "pytest-xdist (>=3.6.1)", "re-assert (>=1.1)", "setuptools (>=74.1.2)", "time-machine (>=2.15)", "wheel (>=0.44)"]
+testing = ["build[virtualenv] (>=1.2.2)", "covdefaults (>=2.3)", "detect-test-pollution (>=1.2)", "devpi-process (>=1)", "diff-cover (>=9.1.1)", "distlib (>=0.3.8)", "flaky (>=3.8.1)", "hatch-vcs (>=0.4)", "hatchling (>=1.25)", "psutil (>=6)", "pytest (>=8.3.2)", "pytest-cov (>=5)", "pytest-mock (>=3.14)", "pytest-xdist (>=3.6.1)", "re-assert (>=1.1)", "setuptools (>=74.1.2)", "time-machine (>=2.15) ; implementation_name != \"pypy\"", "wheel (>=0.44)"]
 
 [[package]]
 name = "typing-extensions"
@@ -632,6 +854,7 @@ version = "4.12.2"
 description = "Backported and Experimental Type Hints for Python 3.8+"
 optional = false
 python-versions = ">=3.8"
+groups = ["main", "dev"]
 files = [
     {file = "typing_extensions-4.12.2-py3-none-any.whl", hash = "sha256:04e5ca0351e0f3f85c6853954072df659d0d13fac324d0072316b67d7794700d"},
     {file = "typing_extensions-4.12.2.tar.gz", hash = "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"},
@@ -643,6 +866,7 @@ version = "20.26.6"
 description = "Virtual Python Environment builder"
 optional = false
 python-versions = ">=3.7"
+groups = ["dev"]
 files = [
     {file = "virtualenv-20.26.6-py3-none-any.whl", hash = "sha256:7345cc5b25405607a624d8418154577459c3e0277f5466dd79c49d5e492995f2"},
     {file = "virtualenv-20.26.6.tar.gz", hash = "sha256:280aede09a2a5c317e409a00102e7077c6432c5a38f0ef938e643805a7ad2c48"},
@@ -655,9 +879,9 @@ platformdirs = ">=3.9.1,<5"
 
 [package.extras]
 docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.2,!=7.3)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"]
-test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.4)", "pytest-env (>=0.8.2)", "pytest-freezer (>=0.4.8)", "pytest-mock (>=3.11.1)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10)"]
+test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.4)", "pytest-env (>=0.8.2)", "pytest-freezer (>=0.4.8) ; platform_python_implementation == \"PyPy\" or platform_python_implementation == \"CPython\" and sys_platform == \"win32\" and python_version >= \"3.13\"", "pytest-mock (>=3.11.1)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10) ; platform_python_implementation == \"CPython\""]
 
 [metadata]
-lock-version = "2.0"
+lock-version = "2.1"
 python-versions = "^3.9"
-content-hash = "f7df9e3d004ebbd58b8cc183482e18da4be89f20292abd8770554dcd23cf7cd9"
+content-hash = "002e2eec3cb1c411750dd3fef8c507049ff639684829628896f78ef0eaf4f0c4"
diff --git a/pyproject.toml b/pyproject.toml
index 7b75402..e1ecaea 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -9,6 +9,7 @@ readme = "README.md"
 [tool.poetry.dependencies]
 python = "^3.9"
 sqlalchemy = "^2.0.0"
+rr-database = {git = "ssh://git@github.com/renalreg/rr_database.git"}
 
 
 [tool.poetry.group.dev.dependencies]

From 345f896b98ffb84226fa825747dbed3356ecd40c Mon Sep 17 00:00:00 2001
From: GlebRysev-UKKA <gleb.rysev@ukkidney.org>
Date: Tue, 9 Dec 2025 15:34:11 +0000
Subject: [PATCH 05/20] style: mypy

---
 ukrr_models/rr_models.py | 46 ++++++++++++----------------------------
 ukrr_models/utils.py     |  4 ++--
 2 files changed, 15 insertions(+), 35 deletions(-)

diff --git a/ukrr_models/rr_models.py b/ukrr_models/rr_models.py
index 612e03d..5d77014 100644
--- a/ukrr_models/rr_models.py
+++ b/ukrr_models/rr_models.py
@@ -169,43 +169,23 @@ class RSA_Extraction_Items(Base):
 class UKRR_Deleted_Patient(Base):
     __tablename__ = "DELETED_PATIENTS"
 
-    RR_NO: Mapped[int] = mapped_column(Integer, primary_key=True)
-    rr_no: Mapped[int] = synonym("RR_NO")
-
-    SURNAME: Mapped[str] = mapped_column(String)
-    surname: Mapped[str] = synonym("SURNAME")
-
-    FORENAME: Mapped[str] = mapped_column(String)
-    forename: Mapped[str] = synonym("FORENAME")
+    rr_no: Mapped[int] = mapped_column("RR_NO", Integer, primary_key=True)
 
-    SEX: Mapped[str] = mapped_column(String)
-    sex: Mapped[str] = synonym("SEX")
+    surname: Mapped[str] = mapped_column("SURNAME", String)
+    forename: Mapped[str] = mapped_column("FORENAME", String)
+    sex: Mapped[str] = mapped_column("SEX", String)
 
-    NHS_NO: Mapped[int] = mapped_column("NEW_NHS_NO", Integer)
-    nhs_no: Mapped[int] = synonym("NHS_NO")
+    nhs_no: Mapped[int] = mapped_column("NEW_NHS_NO", Integer)
+    chi_no: Mapped[int] = mapped_column("CHI_NO", Integer)
+    hsc_no: Mapped[int] = mapped_column("HSC_NO", Integer)
+    uk_tssa_no: Mapped[int] = mapped_column("UKTSSA_NO", Integer)
+    local_hosp_no: Mapped[str] = mapped_column("LOCAL_HOSP_NO", String)
 
-    CHI_NO: Mapped[int] = mapped_column(Integer)
-    chi_no: Mapped[int] = synonym("CHI_NO")
+    date_birth: Mapped[Optional[datetime]] = mapped_column("DATE_BIRTH", Date)
+    date_death: Mapped[Optional[datetime]] = mapped_column("DATE_DEATH", Date)
 
-    HSC_NO: Mapped[int] = mapped_column(Integer)
-    hsc_no: Mapped[int] = synonym("HSC_NO")
-
-    UKTSSA_NO: Mapped[int] = mapped_column(Integer)
-    uk_tssa_no: Mapped[int] = synonym("UKTSSA_NO")
-
-    LOCAL_HOSP_NO: Mapped[str] = mapped_column(String)
-    local_hosp_no: Mapped[str] = synonym("LOCAL_HOSP_NO")
-
-    DATE_BIRTH: Mapped[str] = mapped_column(Date)
-    date_birth: Mapped[str] = synonym("DATE_BIRTH")
-
-    DATE_DEATH: Mapped[str] = mapped_column(Date)
-    date_death: Mapped[str] = synonym("DATE_DEATH")
-    
-    AUDIT_DATE: Mapped[Optional[datetime]] = mapped_column(DateTime)
-    audit_date: Mapped[Optional[datetime]] = synonym("AUDIT_DATE")
-    AUDIT_TIME: Mapped[Optional[int]] = mapped_column(Numeric(8, 0))
-    audit_time: Mapped[Optional[datetime]] = synonym("AUDIT_TIME")
+    audit_date: Mapped[Optional[datetime]] = mapped_column("AUDIT_DATE", DateTime)
+    audit_time: Mapped[Optional[int]] = mapped_column("AUDIT_TIME", Numeric(8, 0))
 
 class QuarterlyTreatment(Base):
     __tablename__ = "QUARTERLY_TREATMENT"
diff --git a/ukrr_models/utils.py b/ukrr_models/utils.py
index cab8cf1..f722555 100644
--- a/ukrr_models/utils.py
+++ b/ukrr_models/utils.py
@@ -66,8 +66,8 @@ def delete_patient(
     }
     
     deleted_patient = UKRR_Deleted_Patient(**deleted_patient_params)
-    deleted_patient.AUDIT_DATE = audit_date_expression()
-    delete_patient.AUDIT_TIME = audit_time_expression()
+    deleted_patient.audit_date = audit_date_expression()
+    delete_patient.audit_time = audit_time_expression()
     
     try:
         session.add(deleted_patient)

From f6828d771d0889ab64d24748778104c62c56b68f Mon Sep 17 00:00:00 2001
From: GlebRysev-UKKA <gleb.rysev@ukkidney.org>
Date: Tue, 9 Dec 2025 15:34:35 +0000
Subject: [PATCH 06/20] fix: typo

---
 ukrr_models/utils.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/ukrr_models/utils.py b/ukrr_models/utils.py
index f722555..52ef3c9 100644
--- a/ukrr_models/utils.py
+++ b/ukrr_models/utils.py
@@ -67,7 +67,7 @@ def delete_patient(
     
     deleted_patient = UKRR_Deleted_Patient(**deleted_patient_params)
     deleted_patient.audit_date = audit_date_expression()
-    delete_patient.audit_time = audit_time_expression()
+    deleted_patient.audit_time = audit_time_expression()
     
     try:
         session.add(deleted_patient)

From 20a47f4024aba68729546db31428790e4e28e7fe Mon Sep 17 00:00:00 2001
From: GlebRysev-UKKA <gleb.rysev@ukkidney.org>
Date: Tue, 9 Dec 2025 15:35:02 +0000
Subject: [PATCH 07/20] style: .

---
 ukrr_models/rr_models.py |  1 +
 ukrr_models/utils.py     | 50 ++++++++++++++++++++++------------------
 2 files changed, 29 insertions(+), 22 deletions(-)

diff --git a/ukrr_models/rr_models.py b/ukrr_models/rr_models.py
index 5d77014..4561077 100644
--- a/ukrr_models/rr_models.py
+++ b/ukrr_models/rr_models.py
@@ -187,6 +187,7 @@ class UKRR_Deleted_Patient(Base):
     audit_date: Mapped[Optional[datetime]] = mapped_column("AUDIT_DATE", DateTime)
     audit_time: Mapped[Optional[int]] = mapped_column("AUDIT_TIME", Numeric(8, 0))
 
+
 class QuarterlyTreatment(Base):
     __tablename__ = "QUARTERLY_TREATMENT"
 
diff --git a/ukrr_models/utils.py b/ukrr_models/utils.py
index 52ef3c9..68c0577 100644
--- a/ukrr_models/utils.py
+++ b/ukrr_models/utils.py
@@ -1,6 +1,5 @@
 import argparse
-import datetime as dt
-from typing import Optional, Iterable
+from typing import Optional
 
 from sqlalchemy import select
 from sqlalchemy.orm import Session
@@ -14,15 +13,18 @@
 def audit_date_expression():
     return cast(func.getdate(), Date)
 
+
 def audit_time_expression():
     return func.concat(
         func.datepart("hour", func.getdate()),
         func.datepart("minute", func.getdate()),
     )
 
+
 class DeletePatientError(Exception):
     pass
 
+
 def delete_patient(
     session: Session,
     rrno: str,
@@ -33,23 +35,23 @@ def delete_patient(
 ):
     """Delete a patient."""
     print(f"Deleting {rrno}...")
-    
-    patient = session.scalar(
-        select(UKRRPatient).where(UKRRPatient.rr_no == rrno)
-    )
-    
+
+    patient = session.scalar(select(UKRRPatient).where(UKRRPatient.rr_no == rrno))
+
     if patient is None:
         raise DeletePatientError(f"Patient (RR_NO={rrno}) not found")
-    
+
     # Find list of columns we need to copy from PATIENTS to DELETED_PATIENTS
     patient_columns = {c.key for c in UKRRPatient.__table__.columns}
     deleted_patient_columns = {c.key for c in UKRR_Deleted_Patient.__table__.columns}
     shared_cols = patient_columns & deleted_patient_columns
-    
+
     print("Adding %s to DELETED_PATIENTS..." % rrno)
-    
-    patinet_params: dict[str, object] = {col: getattr(patient, col) for col in shared_cols}
-    
+
+    patinet_params: dict[str, object] = {
+        col: getattr(patient, col) for col in shared_cols
+    }
+
     patinet_params.update(
         {
             "USERNAME": username,
@@ -58,27 +60,30 @@ def delete_patient(
             "DUPLICATE_RR_NO": duplicate_rrno,
         }
     )
-    
+
     deleted_patient_params = {
         key: value
         for key, value in patinet_params.items()
         if key in deleted_patient_columns
     }
-    
+
     deleted_patient = UKRR_Deleted_Patient(**deleted_patient_params)
     deleted_patient.audit_date = audit_date_expression()
     deleted_patient.audit_time = audit_time_expression()
-    
+
     try:
         session.add(deleted_patient)
         session.delete(patient)
         session.commit()
     except SQLAlchemyError:
         session.rollback()
-        raise DeletePatientError(f"Error adding patient (RR_NO={rrno}) to DELETED_PATIENTS")
-    
+        raise DeletePatientError(
+            f"Error adding patient (RR_NO={rrno}) to DELETED_PATIENTS"
+        )
+
     print(f"Deleted {rrno}")
-    
+
+
 if __name__ == "__main__":
     parser = argparse.ArgumentParser()
 
@@ -87,12 +92,14 @@ def delete_patient(
     parser.add_argument("--authorised-by", required=True)
     parser.add_argument("--reason", required=True)
     parser.add_argument("--duplicate-rrno", required=False)
-    
+
     args = parser.parse_args()
-    
+
     database = SQLServerDatabase.connect(server="RR-SQL-Live", database="renalreg")
     with database.session as session:
-        print(f"Deleting patient {args.rrno}, authorised by {args.authorised_by} for reason {args.reason}")
+        print(
+            f"Deleting patient {args.rrno}, authorised by {args.authorised_by} for reason {args.reason}"
+        )
         delete_patient(
             session=session,
             rrno=args.rrno,
@@ -101,4 +108,3 @@ def delete_patient(
             reason=args.reason,
             duplicate_rrno=args.duplicate_rrno,
         )
-    
\ No newline at end of file

From ad29f81abb2f476162e71560d5de5d52ffdb7817 Mon Sep 17 00:00:00 2001
From: GlebRysev-UKKA <gleb.rysev@ukkidney.org>
Date: Fri, 13 Mar 2026 14:43:20 +0000
Subject: [PATCH 08/20] fix: update models

---
 ukrr_models/rr_models.py | 46 ++++++++++++++++++++++++++++++----------
 1 file changed, 35 insertions(+), 11 deletions(-)

diff --git a/ukrr_models/rr_models.py b/ukrr_models/rr_models.py
index 4561077..8bd41ae 100644
--- a/ukrr_models/rr_models.py
+++ b/ukrr_models/rr_models.py
@@ -43,6 +43,9 @@ class UKRRPatient(Base):
 
     UKTSSA_NO: Mapped[int] = mapped_column(Integer)
     uk_tssa_no: Mapped[int] = synonym("UKTSSA_NO")
+    
+    LOCAL_HOSP_NO: Mapped[str] = mapped_column("LOCAL_HOSP_NO", String)
+    local_hosp_no: Mapped[str] = synonym("LOCAL_HOSP_NO")
 
     DATE_BIRTH: Mapped[str] = mapped_column(Date)
     date_birth: Mapped[str] = synonym("DATE_BIRTH")
@@ -169,20 +172,41 @@ class RSA_Extraction_Items(Base):
 class UKRR_Deleted_Patient(Base):
     __tablename__ = "DELETED_PATIENTS"
 
-    rr_no: Mapped[int] = mapped_column("RR_NO", Integer, primary_key=True)
+    HOSP_CENTRE: Mapped[str] = mapped_column(String)
+    hosp_centre: Mapped[str] = synonym("HOSP_CENTRE")
+    
+    RR_NO: Mapped[int] = mapped_column("RR_NO", Integer, primary_key=True, autoincrement=False)
+    rr_no: Mapped[int] = synonym("RR_NO")
 
-    surname: Mapped[str] = mapped_column("SURNAME", String)
-    forename: Mapped[str] = mapped_column("FORENAME", String)
-    sex: Mapped[str] = mapped_column("SEX", String)
+    SURNAME: Mapped[str] = mapped_column("SURNAME", String)
+    surname: Mapped[str] = synonym("SURNAME")
+    
+    FORENAME: Mapped[str] = mapped_column("FORENAME", String)
+    forename: Mapped[str] = synonym("FORENAME")
+    
+    SEX: Mapped[str] = mapped_column("SEX", String)
+    sex: Mapped[str] = synonym("OPT_OUT_FLAG")
 
-    nhs_no: Mapped[int] = mapped_column("NEW_NHS_NO", Integer)
-    chi_no: Mapped[int] = mapped_column("CHI_NO", Integer)
-    hsc_no: Mapped[int] = mapped_column("HSC_NO", Integer)
-    uk_tssa_no: Mapped[int] = mapped_column("UKTSSA_NO", Integer)
-    local_hosp_no: Mapped[str] = mapped_column("LOCAL_HOSP_NO", String)
+    NHS_NO: Mapped[int] = mapped_column("NEW_NHS_NO", Integer)
+    nhs_no: Mapped[int] = synonym("NHS_NO")
 
-    date_birth: Mapped[Optional[datetime]] = mapped_column("DATE_BIRTH", Date)
-    date_death: Mapped[Optional[datetime]] = mapped_column("DATE_DEATH", Date)
+    CHI_NO: Mapped[int] = mapped_column("CHI_NO", Integer)
+    chi_no: Mapped[int] = synonym("CHI_NO")
+
+    HSC_NO: Mapped[int] = mapped_column("HSC_NO", Integer)
+    hsc_no: Mapped[int] = synonym("HSC_NO")
+    
+    UKTSSA_NO: Mapped[int] = mapped_column("UKTSSA_NO", Integer)
+    uk_tssa_no: Mapped[int] = synonym("UKTSSA_NO")
+    
+    LOCAL_HOSP_NO: Mapped[str] = mapped_column("LOCAL_HOSP_NO", String)
+    local_hosp_no: Mapped[str] = synonym("LOCAL_HOSP_NO")
+
+    DATE_BIRTH: Mapped[str] = mapped_column("DATE_BIRTH", Date)
+    date_birth: Mapped[str] = synonym("DATE_BIRTH")
+
+    DATE_DEATH: Mapped[str] = mapped_column("DATE_DEATH", Date)
+    date_death: Mapped[str] = synonym("DATE_DEATH")
 
     audit_date: Mapped[Optional[datetime]] = mapped_column("AUDIT_DATE", DateTime)
     audit_time: Mapped[Optional[int]] = mapped_column("AUDIT_TIME", Numeric(8, 0))

From 6d5391f6b91bfa23f9d205f681842e5f881fc14d Mon Sep 17 00:00:00 2001
From: GlebRysev-UKKA <gleb.rysev@ukkidney.org>
Date: Fri, 13 Mar 2026 14:45:26 +0000
Subject: [PATCH 09/20] fix: column renames and proper time formats

---
 ukrr_models/utils.py | 23 ++++++++++++++++-------
 1 file changed, 16 insertions(+), 7 deletions(-)

diff --git a/ukrr_models/utils.py b/ukrr_models/utils.py
index 68c0577..e2ff0e6 100644
--- a/ukrr_models/utils.py
+++ b/ukrr_models/utils.py
@@ -3,8 +3,8 @@
 
 from sqlalchemy import select
 from sqlalchemy.orm import Session
-from sqlalchemy import func, cast, Date
 from sqlalchemy.exc import SQLAlchemyError
+from sqlalchemy import func, cast, Date, text
 from rr_database.sqlserver import SQLServerDatabase
 
 from ukrr_models.rr_models import UKRRPatient, UKRR_Deleted_Patient
@@ -15,9 +15,12 @@ def audit_date_expression():
 
 
 def audit_time_expression():
-    return func.concat(
-        func.datepart("hour", func.getdate()),
-        func.datepart("minute", func.getdate()),
+    ''' 
+    Return time in format 1945 (for 19:45) or 0705 (for 07:05)
+    '''
+    return text(
+        "RIGHT('0' + CAST(DATEPART(hour, GETDATE()) AS VARCHAR(2)), 2) + "
+        "RIGHT('0' + CAST(DATEPART(minute, GETDATE()) AS VARCHAR(2)), 2)"
     )
 
 
@@ -41,6 +44,11 @@ def delete_patient(
     if patient is None:
         raise DeletePatientError(f"Patient (RR_NO={rrno}) not found")
 
+    # Column is called NHS_NO in the model, but NEW_NHS_NO in the DB
+    rename_map = {
+        "NEW_NHS_NO": "NHS_NO",
+    }
+    
     # Find list of columns we need to copy from PATIENTS to DELETED_PATIENTS
     patient_columns = {c.key for c in UKRRPatient.__table__.columns}
     deleted_patient_columns = {c.key for c in UKRR_Deleted_Patient.__table__.columns}
@@ -49,7 +57,7 @@ def delete_patient(
     print("Adding %s to DELETED_PATIENTS..." % rrno)
 
     patinet_params: dict[str, object] = {
-        col: getattr(patient, col) for col in shared_cols
+        rename_map.get(col, col): getattr(patient, rename_map.get(col, col)) for col in shared_cols
     }
 
     patinet_params.update(
@@ -66,7 +74,7 @@ def delete_patient(
         for key, value in patinet_params.items()
         if key in deleted_patient_columns
     }
-
+        
     deleted_patient = UKRR_Deleted_Patient(**deleted_patient_params)
     deleted_patient.audit_date = audit_date_expression()
     deleted_patient.audit_time = audit_time_expression()
@@ -95,7 +103,8 @@ def delete_patient(
 
     args = parser.parse_args()
 
-    database = SQLServerDatabase.connect(server="RR-SQL-Live", database="renalreg")
+    database = SQLServerDatabase.connect(server="RR-SQL-Test", database="renalreg")
+    table_desc = database.table_definitions()
     with database.session as session:
         print(
             f"Deleting patient {args.rrno}, authorised by {args.authorised_by} for reason {args.reason}"

From 2db6ac197990a84a17a1135b75c9f171d330d157 Mon Sep 17 00:00:00 2001
From: GlebRysev-UKKA <gleb.rysev@ukkidney.org>
Date: Fri, 13 Mar 2026 15:08:14 +0000
Subject: [PATCH 10/20] style: .

---
 tox.ini                  |  5 ++++-
 ukrr_models/rr_models.py | 16 +++++++++-------
 ukrr_models/utils.py     | 16 ++++++++--------
 3 files changed, 21 insertions(+), 16 deletions(-)

diff --git a/tox.ini b/tox.ini
index bac2a24..2c370f8 100644
--- a/tox.ini
+++ b/tox.ini
@@ -11,16 +11,19 @@ commands =
 
 [testenv:ruff_format]
 description = 'Check code style with Ruff'
+skip_install = true
 commands = poetry run ruff format . --check
 
 [testenv:ruff_lint]
 description = 'Execute static analysis with ruff.'
+skip_install = true
 commands = poetry run ruff check .
 
 [testenv:mypy]
 description = 'Execute static analysis with mypy.'
+skip_install = true
 commands = poetry run mypy ukrr_models/
 
 [testenv:bandit]
 description = 'Execute static analysis with bandit.'
-commands = poetry run  bandit -c pyproject.toml -r .
\ No newline at end of file
+commands = poetry run  bandit -c pyproject.toml -r ukrr_models/
\ No newline at end of file
diff --git a/ukrr_models/rr_models.py b/ukrr_models/rr_models.py
index 8bd41ae..89795c3 100644
--- a/ukrr_models/rr_models.py
+++ b/ukrr_models/rr_models.py
@@ -43,7 +43,7 @@ class UKRRPatient(Base):
 
     UKTSSA_NO: Mapped[int] = mapped_column(Integer)
     uk_tssa_no: Mapped[int] = synonym("UKTSSA_NO")
-    
+
     LOCAL_HOSP_NO: Mapped[str] = mapped_column("LOCAL_HOSP_NO", String)
     local_hosp_no: Mapped[str] = synonym("LOCAL_HOSP_NO")
 
@@ -174,16 +174,18 @@ class UKRR_Deleted_Patient(Base):
 
     HOSP_CENTRE: Mapped[str] = mapped_column(String)
     hosp_centre: Mapped[str] = synonym("HOSP_CENTRE")
-    
-    RR_NO: Mapped[int] = mapped_column("RR_NO", Integer, primary_key=True, autoincrement=False)
+
+    RR_NO: Mapped[int] = mapped_column(
+        "RR_NO", Integer, primary_key=True, autoincrement=False
+    )
     rr_no: Mapped[int] = synonym("RR_NO")
 
     SURNAME: Mapped[str] = mapped_column("SURNAME", String)
     surname: Mapped[str] = synonym("SURNAME")
-    
+
     FORENAME: Mapped[str] = mapped_column("FORENAME", String)
     forename: Mapped[str] = synonym("FORENAME")
-    
+
     SEX: Mapped[str] = mapped_column("SEX", String)
     sex: Mapped[str] = synonym("OPT_OUT_FLAG")
 
@@ -195,10 +197,10 @@ class UKRR_Deleted_Patient(Base):
 
     HSC_NO: Mapped[int] = mapped_column("HSC_NO", Integer)
     hsc_no: Mapped[int] = synonym("HSC_NO")
-    
+
     UKTSSA_NO: Mapped[int] = mapped_column("UKTSSA_NO", Integer)
     uk_tssa_no: Mapped[int] = synonym("UKTSSA_NO")
-    
+
     LOCAL_HOSP_NO: Mapped[str] = mapped_column("LOCAL_HOSP_NO", String)
     local_hosp_no: Mapped[str] = synonym("LOCAL_HOSP_NO")
 
diff --git a/ukrr_models/utils.py b/ukrr_models/utils.py
index e2ff0e6..ff72333 100644
--- a/ukrr_models/utils.py
+++ b/ukrr_models/utils.py
@@ -1,7 +1,6 @@
 import argparse
-from typing import Optional
-
 from sqlalchemy import select
+from typing import Optional, Any
 from sqlalchemy.orm import Session
 from sqlalchemy.exc import SQLAlchemyError
 from sqlalchemy import func, cast, Date, text
@@ -15,9 +14,9 @@ def audit_date_expression():
 
 
 def audit_time_expression():
-    ''' 
+    """
     Return time in format 1945 (for 19:45) or 0705 (for 07:05)
-    '''
+    """
     return text(
         "RIGHT('0' + CAST(DATEPART(hour, GETDATE()) AS VARCHAR(2)), 2) + "
         "RIGHT('0' + CAST(DATEPART(minute, GETDATE()) AS VARCHAR(2)), 2)"
@@ -48,7 +47,7 @@ def delete_patient(
     rename_map = {
         "NEW_NHS_NO": "NHS_NO",
     }
-    
+
     # Find list of columns we need to copy from PATIENTS to DELETED_PATIENTS
     patient_columns = {c.key for c in UKRRPatient.__table__.columns}
     deleted_patient_columns = {c.key for c in UKRR_Deleted_Patient.__table__.columns}
@@ -57,7 +56,8 @@ def delete_patient(
     print("Adding %s to DELETED_PATIENTS..." % rrno)
 
     patinet_params: dict[str, object] = {
-        rename_map.get(col, col): getattr(patient, rename_map.get(col, col)) for col in shared_cols
+        rename_map.get(col, col): getattr(patient, rename_map.get(col, col))
+        for col in shared_cols
     }
 
     patinet_params.update(
@@ -69,12 +69,12 @@ def delete_patient(
         }
     )
 
-    deleted_patient_params = {
+    deleted_patient_params: dict[str, Any] = {
         key: value
         for key, value in patinet_params.items()
         if key in deleted_patient_columns
     }
-        
+
     deleted_patient = UKRR_Deleted_Patient(**deleted_patient_params)
     deleted_patient.audit_date = audit_date_expression()
     deleted_patient.audit_time = audit_time_expression()

From 893e3fc105dfb9ad3e96f5482f909e9b1b1571c6 Mon Sep 17 00:00:00 2001
From: GlebRysev-UKKA <gleb.rysev@ukkidney.org>
Date: Fri, 13 Mar 2026 15:08:30 +0000
Subject: [PATCH 11/20] build: bump version

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index e1ecaea..6623c81 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "ukrr-models"
-version = "3.1.0"
+version = "3.1.1"
 description = "Models of the UKRR database"
 authors = ["UK Renal Registry"]
 license = "MIT"

From 69608faf1c9de3f7d7c39f519333725b1ac32d95 Mon Sep 17 00:00:00 2001
From: GlebRysev-UKKA <gleb.rysev@ukkidney.org>
Date: Mon, 16 Mar 2026 09:30:40 +0000
Subject: [PATCH 12/20] ci: new actions

---
 .github/workflows/python_test.yml | 68 ++++++++-----------------------
 1 file changed, 17 insertions(+), 51 deletions(-)

diff --git a/.github/workflows/python_test.yml b/.github/workflows/python_test.yml
index f9d8ed6..e3c0709 100644
--- a/.github/workflows/python_test.yml
+++ b/.github/workflows/python_test.yml
@@ -1,60 +1,26 @@
+# 📘 Full documentation:
+# https://github.com/renalreg/.github/blob/main/README.md#python-test-workflow
+
+
 name: Python Test
 
 on:
   pull_request:
     branches:
-      - main
+      - "master"
 
   workflow_dispatch:
 
 jobs:
-  test:
-    runs-on: ${{ matrix.platform }}
-    strategy:
-      matrix:
-        platform:
-          - ubuntu-latest
-          - windows-latest
-        python-version: ["3.9", "3.10", "3.11"]
-
-    env:
-      DIRECTORY_TO_SCAN: ./ukrr_models
-      TODO_REGEX: 'TODO:(?!\s*\[[A-Za-z0-9-]+\])'
-
-    steps:
-      - name: Checkout
-        uses: actions/checkout@v4
-
-      - name: Install Poetry
-        uses: Gr1N/setup-poetry@v8
-
-      - name: Set Up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v4
-        with:
-          python-version: ${{ matrix.python-version }}
-
-      - name: Install Dependencies
-        run: poetry install
-
-      - name: Run Tox
-        run: poetry run tox
-
-      - name: TODO Check (Linux)
-        if: runner.os == 'Linux'
-        run: |
-          result=$(find "$DIRECTORY_TO_SCAN" -type f -name "*.py" -exec grep -Hn -P "$TODO_REGEX" {} \;)
-          if [ -n "$result" ]; then
-            echo "Non-matching TODO comments found:"
-            echo "$result"
-            exit 1
-          fi
-
-      - name: TODO Check (Windows)
-        if: runner.os == 'Windows'
-        run: |
-          $result = Get-ChildItem -Path $env:DIRECTORY_TO_SCAN -Filter *.py -Recurse | ForEach-Object { Get-Content $_.FullName | Select-String -Pattern $env:TODO_REGEX }
-          if ($result) {
-            echo "Non-matching TODO comments found:"
-            echo "$result"
-            exit 1
-          }
+  call-workflow:
+    name: Running python tests
+    uses: renalreg/.github/.github/workflows/python_test.yml@main
+    secrets: inherit
+    with:  
+      python_versions: '["3.11", "3.12"]'
+
+      os: '["windows-latest"]'
+      package_manager_command: "pip install poetry"
+      install_command: "poetry install"
+      test_command: "poetry run tox"
+      org_deps: true

From 2d8b66533201c7c20680997fac2bd95b97e24174 Mon Sep 17 00:00:00 2001
From: GlebRysev-UKKA <gleb.rysev@ukkidney.org>
Date: Mon, 16 Mar 2026 10:18:03 +0000
Subject: [PATCH 13/20] build: dependencies

---
 .github/workflows/python_test.yml |   4 +-
 poetry.lock                       | 307 ++++++++++++++++++++++++------
 pyproject.toml                    |   4 +-
 3 files changed, 256 insertions(+), 59 deletions(-)

diff --git a/.github/workflows/python_test.yml b/.github/workflows/python_test.yml
index e3c0709..c49a08b 100644
--- a/.github/workflows/python_test.yml
+++ b/.github/workflows/python_test.yml
@@ -17,9 +17,9 @@ jobs:
     uses: renalreg/.github/.github/workflows/python_test.yml@main
     secrets: inherit
     with:  
-      python_versions: '["3.11", "3.12"]'
+      python_versions: '["3.12"]'
 
-      os: '["windows-latest"]'
+      os: '["windows-latest", "ubuntu-latest"]'
       package_manager_command: "pip install poetry"
       install_command: "poetry install"
       test_command: "poetry run tox"
diff --git a/poetry.lock b/poetry.lock
index f5b65f5..d106b9b 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -37,6 +37,104 @@ files = [
     {file = "cachetools-5.5.0.tar.gz", hash = "sha256:2cc24fb4cbe39633fb7badd9db9ca6295d766d9c2995f245725a46715d050f2a"},
 ]
 
+[[package]]
+name = "cffi"
+version = "2.0.0"
+description = "Foreign Function Interface for Python calling C code."
+optional = false
+python-versions = ">=3.9"
+groups = ["main"]
+markers = "platform_python_implementation != \"PyPy\""
+files = [
+    {file = "cffi-2.0.0-cp310-cp310-macosx_10_13_x86_64.whl", hash = "sha256:0cf2d91ecc3fcc0625c2c530fe004f82c110405f101548512cce44322fa8ac44"},
+    {file = "cffi-2.0.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:f73b96c41e3b2adedc34a7356e64c8eb96e03a3782b535e043a986276ce12a49"},
+    {file = "cffi-2.0.0-cp310-cp310-manylinux1_i686.manylinux2014_i686.manylinux_2_17_i686.manylinux_2_5_i686.whl", hash = "sha256:53f77cbe57044e88bbd5ed26ac1d0514d2acf0591dd6bb02a3ae37f76811b80c"},
+    {file = "cffi-2.0.0-cp310-cp310-manylinux2014_aarch64.manylinux_2_17_aarch64.whl", hash = "sha256:3e837e369566884707ddaf85fc1744b47575005c0a229de3327f8f9a20f4efeb"},
+    {file = "cffi-2.0.0-cp310-cp310-manylinux2014_ppc64le.manylinux_2_17_ppc64le.whl", hash = "sha256:5eda85d6d1879e692d546a078b44251cdd08dd1cfb98dfb77b670c97cee49ea0"},
+    {file = "cffi-2.0.0-cp310-cp310-manylinux2014_s390x.manylinux_2_17_s390x.whl", hash = "sha256:9332088d75dc3241c702d852d4671613136d90fa6881da7d770a483fd05248b4"},
+    {file = "cffi-2.0.0-cp310-cp310-manylinux2014_x86_64.manylinux_2_17_x86_64.whl", hash = "sha256:fc7de24befaeae77ba923797c7c87834c73648a05a4bde34b3b7e5588973a453"},
+    {file = "cffi-2.0.0-cp310-cp310-musllinux_1_2_aarch64.whl", hash = "sha256:cf364028c016c03078a23b503f02058f1814320a56ad535686f90565636a9495"},
+    {file = "cffi-2.0.0-cp310-cp310-musllinux_1_2_i686.whl", hash = "sha256:e11e82b744887154b182fd3e7e8512418446501191994dbf9c9fc1f32cc8efd5"},
+    {file = "cffi-2.0.0-cp310-cp310-musllinux_1_2_x86_64.whl", hash = "sha256:8ea985900c5c95ce9db1745f7933eeef5d314f0565b27625d9a10ec9881e1bfb"},
+    {file = "cffi-2.0.0-cp310-cp310-win32.whl", hash = "sha256:1f72fb8906754ac8a2cc3f9f5aaa298070652a0ffae577e0ea9bd480dc3c931a"},
+    {file = "cffi-2.0.0-cp310-cp310-win_amd64.whl", hash = "sha256:b18a3ed7d5b3bd8d9ef7a8cb226502c6bf8308df1525e1cc676c3680e7176739"},
+    {file = "cffi-2.0.0-cp311-cp311-macosx_10_13_x86_64.whl", hash = "sha256:b4c854ef3adc177950a8dfc81a86f5115d2abd545751a304c5bcf2c2c7283cfe"},
+    {file = "cffi-2.0.0-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:2de9a304e27f7596cd03d16f1b7c72219bd944e99cc52b84d0145aefb07cbd3c"},
+    {file = "cffi-2.0.0-cp311-cp311-manylinux1_i686.manylinux2014_i686.manylinux_2_17_i686.manylinux_2_5_i686.whl", hash = "sha256:baf5215e0ab74c16e2dd324e8ec067ef59e41125d3eade2b863d294fd5035c92"},
+    {file = "cffi-2.0.0-cp311-cp311-manylinux2014_aarch64.manylinux_2_17_aarch64.whl", hash = "sha256:730cacb21e1bdff3ce90babf007d0a0917cc3e6492f336c2f0134101e0944f93"},
+    {file = "cffi-2.0.0-cp311-cp311-manylinux2014_ppc64le.manylinux_2_17_ppc64le.whl", hash = "sha256:6824f87845e3396029f3820c206e459ccc91760e8fa24422f8b0c3d1731cbec5"},
+    {file = "cffi-2.0.0-cp311-cp311-manylinux2014_s390x.manylinux_2_17_s390x.whl", hash = "sha256:9de40a7b0323d889cf8d23d1ef214f565ab154443c42737dfe52ff82cf857664"},
+    {file = "cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl", hash = "sha256:8941aaadaf67246224cee8c3803777eed332a19d909b47e29c9842ef1e79ac26"},
+    {file = "cffi-2.0.0-cp311-cp311-musllinux_1_2_aarch64.whl", hash = "sha256:a05d0c237b3349096d3981b727493e22147f934b20f6f125a3eba8f994bec4a9"},
+    {file = "cffi-2.0.0-cp311-cp311-musllinux_1_2_i686.whl", hash = "sha256:94698a9c5f91f9d138526b48fe26a199609544591f859c870d477351dc7b2414"},
+    {file = "cffi-2.0.0-cp311-cp311-musllinux_1_2_x86_64.whl", hash = "sha256:5fed36fccc0612a53f1d4d9a816b50a36702c28a2aa880cb8a122b3466638743"},
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+    {file = "cryptography-46.0.5.tar.gz", hash = "sha256:abace499247268e3757271b2f1e244b36b06f8515cf27c4d49468fc9eb16e93d"},
+]
+
+[package.dependencies]
+cffi = {version = ">=2.0.0", markers = "python_full_version >= \"3.9.0\" and platform_python_implementation != \"PyPy\""}
+
+[package.extras]
+docs = ["sphinx (>=5.3.0)", "sphinx-inline-tabs", "sphinx-rtd-theme (>=3.0.0)"]
+docstest = ["pyenchant (>=3)", "readme-renderer (>=30.0)", "sphinxcontrib-spelling (>=7.3.1)"]
+nox = ["nox[uv] (>=2024.4.15)"]
+pep8test = ["check-sdist", "click (>=8.0.1)", "mypy (>=1.14)", "ruff (>=0.11.11)"]
+sdist = ["build (>=1.0.0)"]
+ssh = ["bcrypt (>=3.1.5)"]
+test = ["certifi (>=2024)", "cryptography-vectors (==46.0.5)", "pretend (>=0.7)", "pytest (>=7.4.0)", "pytest-benchmark (>=4.0)", "pytest-cov (>=2.10.1)", "pytest-xdist (>=3.5.0)"]
+test-randomorder = ["pytest-randomly"]
+
 [[package]]
 name = "distlib"
 version = "0.3.8"
@@ -74,32 +244,15 @@ files = [
 ]
 
 [[package]]
-name = "exceptiongroup"
-version = "1.2.2"
-description = "Backport of PEP 654 (exception groups)"
-optional = false
-python-versions = ">=3.7"
-groups = ["dev"]
-markers = "python_version < \"3.11\""
-files = [
-    {file = "exceptiongroup-1.2.2-py3-none-any.whl", hash = "sha256:3111b9d131c238bec2f8f516e123e14ba243563fb135d3fe885990585aa7795b"},
-    {file = "exceptiongroup-1.2.2.tar.gz", hash = "sha256:47c2edf7c6738fafb49fd34290706d1a1a2f4d1c6df275526b62cbb4aa5393cc"},
-]
-
-[package.extras]
-test = ["pytest (>=6)"]
-
-[[package]]
-name = "filelock"
-version = "3.19.1"
-description = "A platform independent file lock."
+name = "easygui"
+version = "0.98.3"
+description = "EasyGUI is a module for very simple, very easy GUI programming in Python.  EasyGUI is different from other GUI generators in that EasyGUI is NOT event-driven.  Instead, all GUI interactions are invoked by simple function calls."
 optional = false
-python-versions = ">=3.9"
-groups = ["dev"]
-markers = "python_version == \"3.9\""
+python-versions = "*"
+groups = ["main"]
 files = [
-    {file = "filelock-3.19.1-py3-none-any.whl", hash = "sha256:d38e30481def20772f5baf097c122c3babc4fcdb7e14e57049eb9d88c6dc017d"},
-    {file = "filelock-3.19.1.tar.gz", hash = "sha256:66eda1888b0171c998b35be2bcc0f6d75c388a7ce20c3f3f37aa8e96c2dddf58"},
+    {file = "easygui-0.98.3-py2.py3-none-any.whl", hash = "sha256:33498710c68b5376b459cd3fc48d1d1f33822139eb3ed01defbc0528326da3ba"},
+    {file = "easygui-0.98.3.tar.gz", hash = "sha256:d653ff79ee1f42f63b5a090f2f98ce02335d86ad8963b3ce2661805cafe99a04"},
 ]
 
 [[package]]
@@ -109,7 +262,6 @@ description = "A platform independent file lock."
 optional = false
 python-versions = ">=3.10"
 groups = ["dev"]
-markers = "python_version >= \"3.10\""
 files = [
     {file = "filelock-3.20.3-py3-none-any.whl", hash = "sha256:4b0dda527ee31078689fc205ec4f1c1bf7d56cf88b6dc9426c4f230e46c2dce1"},
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@@ -122,7 +274,7 @@ description = "Lightweight in-process concurrent programming"
 optional = false
 python-versions = ">=3.7"
 groups = ["main"]
-markers = "python_version < \"3.13\" and (platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\")"
+markers = "python_version == \"3.12\" and (platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\")"
 files = [
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@@ -276,7 +428,6 @@ files = [
 
 [package.dependencies]
 mypy-extensions = ">=1.0.0"
-tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""}
 typing-extensions = ">=4.6.0"
 
 [package.extras]
@@ -297,6 +448,58 @@ files = [
     {file = "mypy_extensions-1.0.0.tar.gz", hash = "sha256:75dbf8955dc00442a438fc4d0666508a9a97b6bd41aa2f0ffe9d2f2725af0782"},
 ]
 
+[[package]]
+name = "oracledb"
+version = "3.4.2"
+description = "Python interface to Oracle Database"
+optional = false
+python-versions = ">=3.9"
+groups = ["main"]
+files = [
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+    {file = "oracledb-3.4.2-cp310-cp310-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:e068ef844a327877bfefbef1bc6fb7284c727bb87af80095f08d95bcaf7b8bb2"},
+    {file = "oracledb-3.4.2-cp310-cp310-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:9f434a739405557bd57cb39b62238142bb27855a524a70dc6d397a2a8c576c9d"},
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+    {file = "oracledb-3.4.2-cp314-cp314-win32.whl", hash = "sha256:d7ce75c498bff758548ec6e4424ab4271aa257e5887cc436a54bc947fd46199a"},
+    {file = "oracledb-3.4.2-cp314-cp314-win_amd64.whl", hash = "sha256:5d7befb014174c5ae11c3a08f5ed6668a25ab2335d8e7104dca70d54d54a5b3a"},
+    {file = "oracledb-3.4.2-cp39-cp39-macosx_10_9_universal2.whl", hash = "sha256:1e4930d7f6584832dcc15b8ca415a7957b0c45f5aa7c4f88702e070e5c53bf93"},
+    {file = "oracledb-3.4.2-cp39-cp39-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:23aa07c1eaca17ae74c6fdc86b218f58484d56452958aead1aa460c0596a76c1"},
+    {file = "oracledb-3.4.2-cp39-cp39-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:f8ea989965a4f636a309444bd696ab877bba373d5d67bf744785f9bd8c560865"},
+    {file = "oracledb-3.4.2-cp39-cp39-win32.whl", hash = "sha256:6d85622664cc88d5a82bbd7beccb62cd53bd272c550a5e15e7d5f8ae6b86f1f1"},
+    {file = "oracledb-3.4.2-cp39-cp39-win_amd64.whl", hash = "sha256:b1095d95d0c8b37e4d0e17cf1928919cb59222b6344362a1cf6a2f3ca205a28a"},
+    {file = "oracledb-3.4.2.tar.gz", hash = "sha256:46e0f2278ff1fe83fbc33a3b93c72d429323ec7eed47bc9484e217776cd437e5"},
+]
+
+[package.dependencies]
+cryptography = ">=3.2.1"
+typing_extensions = ">=4.14.0"
+
+[package.extras]
+azure-auth = ["msal"]
+azure-config = ["azure-appconfiguration", "azure-identity", "azure-keyvault-secrets"]
+oci-auth = ["oci"]
+oci-config = ["oci"]
+test = ["anyio", "numpy", "pandas", "pyarrow", "pytest", "tox"]
+
 [[package]]
 name = "packaging"
 version = "24.1"
@@ -354,6 +557,19 @@ files = [
 dev = ["pre-commit", "tox"]
 testing = ["pytest", "pytest-benchmark"]
 
+[[package]]
+name = "pycparser"
+version = "3.0"
+description = "C parser in Python"
+optional = false
+python-versions = ">=3.10"
+groups = ["main"]
+markers = "platform_python_implementation != \"PyPy\" and implementation_name != \"PyPy\""
+files = [
+    {file = "pycparser-3.0-py3-none-any.whl", hash = "sha256:b727414169a36b7d524c1c3e31839a521725078d7b2ff038656844266160a992"},
+    {file = "pycparser-3.0.tar.gz", hash = "sha256:600f49d217304a5902ac3c37e1281c9fe94e4d0489de643a9504c5cdfdfc6b29"},
+]
+
 [[package]]
 name = "pygments"
 version = "2.18.0"
@@ -442,7 +658,6 @@ files = [
 
 [package.dependencies]
 packaging = ">=24.1"
-tomli = {version = ">=2.0.1", markers = "python_version < \"3.11\""}
 
 [package.extras]
 docs = ["furo (>=2024.5.6)", "sphinx-autodoc-typehints (>=2.2.1)"]
@@ -532,11 +747,9 @@ files = [
 
 [package.dependencies]
 colorama = {version = "*", markers = "sys_platform == \"win32\""}
-exceptiongroup = {version = ">=1.0.0rc8", markers = "python_version < \"3.11\""}
 iniconfig = "*"
 packaging = "*"
 pluggy = ">=1.5,<2"
-tomli = {version = ">=1", markers = "python_version < \"3.11\""}
 
 [package.extras]
 dev = ["argcomplete", "attrs (>=19.2)", "hypothesis (>=3.56)", "mock", "pygments (>=2.7.2)", "requests", "setuptools", "xmlschema"]
@@ -653,15 +866,17 @@ jupyter = ["ipywidgets (>=7.5.1,<9)"]
 
 [[package]]
 name = "rr-database"
-version = "1.1.20"
+version = "1.1.21"
 description = ""
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.12, <3.14"
 groups = ["main"]
 files = []
 develop = false
 
 [package.dependencies]
+easygui = "^0.98.3"
+oracledb = "^3.4.2"
 pymssql = "^2.3.1"
 pyqt6 = "^6.0.0"
 pywin32 = "^308"
@@ -670,9 +885,9 @@ sqlparams = "^6.1.0"
 
 [package.source]
 type = "git"
-url = "ssh://git@github.com/renalreg/rr_database.git"
+url = "https://github.com/renalreg/rr_database.git"
 reference = "HEAD"
-resolved_reference = "f6bd6b03b7b63262285056eb3459e027b3bb22f5"
+resolved_reference = "697ccac26867ab4af50c7fab5c2becd68f77c6e5"
 
 [[package]]
 name = "ruff"
@@ -816,19 +1031,6 @@ files = [
 [package.dependencies]
 pbr = ">=2.0.0"
 
-[[package]]
-name = "tomli"
-version = "2.0.1"
-description = "A lil' TOML parser"
-optional = false
-python-versions = ">=3.7"
-groups = ["dev"]
-markers = "python_version < \"3.11\""
-files = [
-    {file = "tomli-2.0.1-py3-none-any.whl", hash = "sha256:939de3e7a6161af0c887ef91b7d41a53e7c5a1ca976325f429cb46ea9bc30ecc"},
-    {file = "tomli-2.0.1.tar.gz", hash = "sha256:de526c12914f0c550d15924c62d72abc48d6fe7364aa87328337a31007fe8a4f"},
-]
-
 [[package]]
 name = "tox"
 version = "4.18.1"
@@ -850,7 +1052,6 @@ packaging = ">=24.1"
 platformdirs = ">=4.2.2"
 pluggy = ">=1.5"
 pyproject-api = ">=1.7.1"
-tomli = {version = ">=2.0.1", markers = "python_version < \"3.11\""}
 virtualenv = ">=20.26.3"
 
 [package.extras]
@@ -883,12 +1084,8 @@ files = [
 
 [package.dependencies]
 distlib = ">=0.3.7,<1"
-filelock = [
-    {version = ">=3.16.1,<4", markers = "python_version < \"3.10\""},
-    {version = ">=3.20.1,<4", markers = "python_version >= \"3.10\""},
-]
+filelock = {version = ">=3.20.1,<4", markers = "python_version >= \"3.10\""}
 platformdirs = ">=3.9.1,<5"
-typing-extensions = {version = ">=4.13.2", markers = "python_version < \"3.11\""}
 
 [package.extras]
 docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.2,!=7.3)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"]
@@ -896,5 +1093,5 @@ test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess
 
 [metadata]
 lock-version = "2.1"
-python-versions = "^3.9"
-content-hash = "002e2eec3cb1c411750dd3fef8c507049ff639684829628896f78ef0eaf4f0c4"
+python-versions = ">=3.12,<3.14"
+content-hash = "594e9df47a517a86fdea036d9dbe0be771bea979154e752fb881de35a8b131bf"
diff --git a/pyproject.toml b/pyproject.toml
index 6623c81..f6f9619 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -7,9 +7,9 @@ license = "MIT"
 readme = "README.md"
 
 [tool.poetry.dependencies]
-python = "^3.9"
+python = ">=3.12,<3.14"
 sqlalchemy = "^2.0.0"
-rr-database = {git = "ssh://git@github.com/renalreg/rr_database.git"}
+rr-database = {git = "https://github.com/renalreg/rr_database.git"}
 
 
 [tool.poetry.group.dev.dependencies]

From e2e7cdd37a9a31268dd706674293c230e4e69c9f Mon Sep 17 00:00:00 2001
From: GlebRysev-UKKA <gleb.rysev@ukkidney.org>
Date: Mon, 16 Mar 2026 10:37:45 +0000
Subject: [PATCH 14/20] build: new lockfile

---
 poetry.lock | 975 ++++++++++++++++++++++++++++++----------------------
 1 file changed, 564 insertions(+), 411 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index d106b9b..d7bd44a 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -2,14 +2,14 @@
 
 [[package]]
 name = "bandit"
-version = "1.7.9"
+version = "1.9.4"
 description = "Security oriented static analyser for python code."
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.10"
 groups = ["dev"]
 files = [
-    {file = "bandit-1.7.9-py3-none-any.whl", hash = "sha256:52077cb339000f337fb25f7e045995c4ad01511e716e5daac37014b9752de8ec"},
-    {file = "bandit-1.7.9.tar.gz", hash = "sha256:7c395a436743018f7be0a4cbb0a4ea9b902b6d87264ddecf8cfdc73b4f78ff61"},
+    {file = "bandit-1.9.4-py3-none-any.whl", hash = "sha256:f89ffa663767f5a0585ea075f01020207e966a9c0f2b9ef56a57c7963a3f6f8e"},
+    {file = "bandit-1.9.4.tar.gz", hash = "sha256:b589e5de2afe70bd4d53fa0c1da6199f4085af666fde00e8a034f152a52cd628"},
 ]
 
 [package.dependencies]
@@ -27,14 +27,14 @@ yaml = ["PyYAML"]
 
 [[package]]
 name = "cachetools"
-version = "5.5.0"
+version = "7.0.5"
 description = "Extensible memoizing collections and decorators"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.10"
 groups = ["dev"]
 files = [
-    {file = "cachetools-5.5.0-py3-none-any.whl", hash = "sha256:02134e8439cdc2ffb62023ce1debca2944c3f289d66bb17ead3ab3dede74b292"},
-    {file = "cachetools-5.5.0.tar.gz", hash = "sha256:2cc24fb4cbe39633fb7badd9db9ca6295d766d9c2995f245725a46715d050f2a"},
+    {file = "cachetools-7.0.5-py3-none-any.whl", hash = "sha256:46bc8ebefbe485407621d0a4264b23c080cedd913921bad7ac3ed2f26c183114"},
+    {file = "cachetools-7.0.5.tar.gz", hash = "sha256:0cd042c24377200c1dcd225f8b7b12b0ca53cc2c961b43757e774ebe190fd990"},
 ]
 
 [[package]]
@@ -135,18 +135,6 @@ files = [
 [package.dependencies]
 pycparser = {version = "*", markers = "implementation_name != \"PyPy\""}
 
-[[package]]
-name = "chardet"
-version = "5.2.0"
-description = "Universal encoding detector for Python 3"
-optional = false
-python-versions = ">=3.7"
-groups = ["dev"]
-files = [
-    {file = "chardet-5.2.0-py3-none-any.whl", hash = "sha256:e1cf59446890a00105fe7b7912492ea04b6e6f06d4b742b2c788469e34c82970"},
-    {file = "chardet-5.2.0.tar.gz", hash = "sha256:1b3b6ff479a8c414bc3fa2c0852995695c4a026dcd6d0633b2dd092ca39c1cf7"},
-]
-
 [[package]]
 name = "colorama"
 version = "0.4.6"
@@ -233,14 +221,14 @@ test-randomorder = ["pytest-randomly"]
 
 [[package]]
 name = "distlib"
-version = "0.3.8"
+version = "0.4.0"
 description = "Distribution utilities"
 optional = false
 python-versions = "*"
 groups = ["dev"]
 files = [
-    {file = "distlib-0.3.8-py2.py3-none-any.whl", hash = "sha256:034db59a0b96f8ca18035f36290806a9a6e6bd9d1ff91e45a7f172eb17e51784"},
-    {file = "distlib-0.3.8.tar.gz", hash = "sha256:1530ea13e350031b6312d8580ddb6b27a104275a31106523b8f123787f494f64"},
+    {file = "distlib-0.4.0-py2.py3-none-any.whl", hash = "sha256:9659f7d87e46584a30b5780e43ac7a2143098441670ff0a49d5f9034c54a6c16"},
+    {file = "distlib-0.4.0.tar.gz", hash = "sha256:feec40075be03a04501a973d81f633735b4b69f98b05450592310c0f401a4e0d"},
 ]
 
 [[package]]
@@ -257,111 +245,207 @@ files = [
 
 [[package]]
 name = "filelock"
-version = "3.20.3"
+version = "3.25.2"
 description = "A platform independent file lock."
 optional = false
 python-versions = ">=3.10"
 groups = ["dev"]
 files = [
-    {file = "filelock-3.20.3-py3-none-any.whl", hash = "sha256:4b0dda527ee31078689fc205ec4f1c1bf7d56cf88b6dc9426c4f230e46c2dce1"},
-    {file = "filelock-3.20.3.tar.gz", hash = "sha256:18c57ee915c7ec61cff0ecf7f0f869936c7c30191bb0cf406f1341778d0834e1"},
+    {file = "filelock-3.25.2-py3-none-any.whl", hash = "sha256:ca8afb0da15f229774c9ad1b455ed96e85a81373065fb10446672f64444ddf70"},
+    {file = "filelock-3.25.2.tar.gz", hash = "sha256:b64ece2b38f4ca29dd3e810287aa8c48182bbecd1ae6e9ae126c9b35f1382694"},
 ]
 
 [[package]]
 name = "greenlet"
-version = "3.0.3"
+version = "3.3.2"
 description = "Lightweight in-process concurrent programming"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.10"
 groups = ["main"]
-markers = "python_version == \"3.12\" and (platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\")"
+markers = "platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\""
 files = [
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 [package.extras]
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+testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions", "requests"]
 
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 name = "mdurl"
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 [package.dependencies]
-mypy-extensions = ">=1.0.0"
-typing-extensions = ">=4.6.0"
+librt = {version = ">=0.6.2", markers = "platform_python_implementation != \"PyPy\""}
+mypy_extensions = ">=1.0.0"
+pathspec = ">=0.9.0"
+typing_extensions = ">=4.6.0"
 
 [package.extras]
 dmypy = ["psutil (>=4.0)"]
+faster-cache = ["orjson"]
 install-types = ["pip"]
 mypyc = ["setuptools (>=50)"]
 reports = ["lxml"]
 
 [[package]]
 name = "mypy-extensions"
-version = "1.0.0"
+version = "1.1.0"
 description = "Type system extensions for programs checked with the mypy type checker."
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.8"
 groups = ["dev"]
 files = [
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 ]
 
 [[package]]
@@ -502,60 +599,61 @@ test = ["anyio", "numpy", "pandas", "pyarrow", "pytest", "tox"]
 
 [[package]]
 name = "packaging"
-version = "24.1"
+version = "26.0"
 description = "Core utilities for Python packages"
 optional = false
 python-versions = ">=3.8"
 groups = ["dev"]
 files = [
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 ]
 
 [[package]]
-name = "pbr"
-version = "6.1.0"
-description = "Python Build Reasonableness"
+name = "pathspec"
+version = "1.0.4"
+description = "Utility library for gitignore style pattern matching of file paths."
 optional = false
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+python-versions = ">=3.9"
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 files = [
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 ]
 
+[package.extras]
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+optional = ["typing-extensions (>=4)"]
+re2 = ["google-re2 (>=1.1)"]
+tests = ["pytest (>=9)", "typing-extensions (>=4.15)"]
+
 [[package]]
 name = "platformdirs"
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+version = "4.9.4"
 description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`."
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.10"
 groups = ["dev"]
 files = [
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-[package.extras]
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-type = ["mypy (>=1.11.2)"]
-
 [[package]]
 name = "pluggy"
-version = "1.5.0"
+version = "1.6.0"
 description = "plugin and hook calling mechanisms for python"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
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 ]
 
 [package.extras]
 dev = ["pre-commit", "tox"]
-testing = ["pytest", "pytest-benchmark"]
+testing = ["coverage", "pytest", "pytest-benchmark"]
 
 [[package]]
 name = "pycparser"
@@ -572,14 +670,14 @@ files = [
 
 [[package]]
 name = "pygments"
-version = "2.18.0"
+version = "2.19.2"
 description = "Pygments is a syntax highlighting package written in Python."
 optional = false
 python-versions = ">=3.8"
 groups = ["dev"]
 files = [
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 ]
 
 [package.extras]
@@ -587,96 +685,90 @@ windows-terminal = ["colorama (>=0.4.6)"]
 
 [[package]]
 name = "pymssql"
-version = "2.3.10"
+version = "2.3.13"
 description = "DB-API interface to Microsoft SQL Server for Python. (new Cython-based version)"
 optional = false
 python-versions = ">=3.9"
 groups = ["main"]
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 [[package]]
 name = "pywin32"
@@ -784,77 +898,97 @@ files = [
 
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+    {file = "sqlalchemy-2.0.48-cp39-cp39-win_amd64.whl", hash = "sha256:b8fc3454b4f3bd0a368001d0e968852dad45a873f8b4babd41bc302ec851a099"},
+    {file = "sqlalchemy-2.0.48-py3-none-any.whl", hash = "sha256:a66fe406437dd65cacd96a72689a3aaaecaebbcd62d81c5ac1c0fdbeac835096"},
+    {file = "sqlalchemy-2.0.48.tar.gz", hash = "sha256:5ca74f37f3369b45e1f6b7b06afb182af1fd5dde009e4ffd831830d98cbe5fe7"},
 ]
 
 [package.dependencies]
-greenlet = {version = "!=0.4.17", markers = "python_version < \"3.13\" and (platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\")"}
+greenlet = {version = ">=1", markers = "platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\""}
 typing-extensions = ">=4.6.0"
 
 [package.extras]
-aiomysql = ["aiomysql (>=0.2.0)", "greenlet (!=0.4.17)"]
-aioodbc = ["aioodbc", "greenlet (!=0.4.17)"]
-aiosqlite = ["aiosqlite", "greenlet (!=0.4.17)", "typing_extensions (!=3.10.0.1)"]
-asyncio = ["greenlet (!=0.4.17)"]
-asyncmy = ["asyncmy (>=0.2.3,!=0.2.4,!=0.2.6)", "greenlet (!=0.4.17)"]
-mariadb-connector = ["mariadb (>=1.0.1,!=1.1.2,!=1.1.5)"]
+aiomysql = ["aiomysql (>=0.2.0)", "greenlet (>=1)"]
+aioodbc = ["aioodbc", "greenlet (>=1)"]
+aiosqlite = ["aiosqlite", "greenlet (>=1)", "typing_extensions (!=3.10.0.1)"]
+asyncio = ["greenlet (>=1)"]
+asyncmy = ["asyncmy (>=0.2.3,!=0.2.4,!=0.2.6)", "greenlet (>=1)"]
+mariadb-connector = ["mariadb (>=1.0.1,!=1.1.2,!=1.1.5,!=1.1.10)"]
 mssql = ["pyodbc"]
 mssql-pymssql = ["pymssql"]
 mssql-pyodbc = ["pyodbc"]
@@ -995,7 +1143,7 @@ mysql-connector = ["mysql-connector-python"]
 oracle = ["cx_oracle (>=8)"]
 oracle-oracledb = ["oracledb (>=1.0.1)"]
 postgresql = ["psycopg2 (>=2.7)"]
-postgresql-asyncpg = ["asyncpg", "greenlet (!=0.4.17)"]
+postgresql-asyncpg = ["asyncpg", "greenlet (>=1)"]
 postgresql-pg8000 = ["pg8000 (>=1.29.1)"]
 postgresql-psycopg = ["psycopg (>=3.0.7)"]
 postgresql-psycopg2binary = ["psycopg2-binary"]
@@ -1018,45 +1166,53 @@ files = [
 
 [[package]]
 name = "stevedore"
-version = "5.3.0"
+version = "5.7.0"
 description = "Manage dynamic plugins for Python applications"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.10"
 groups = ["dev"]
 files = [
-    {file = "stevedore-5.3.0-py3-none-any.whl", hash = "sha256:1efd34ca08f474dad08d9b19e934a22c68bb6fe416926479ba29e5013bcc8f78"},
-    {file = "stevedore-5.3.0.tar.gz", hash = "sha256:9a64265f4060312828151c204efbe9b7a9852a0d9228756344dbc7e4023e375a"},
+    {file = "stevedore-5.7.0-py3-none-any.whl", hash = "sha256:fd25efbb32f1abb4c9e502f385f0018632baac11f9ee5d1b70f88cc5e22ad4ed"},
+    {file = "stevedore-5.7.0.tar.gz", hash = "sha256:31dd6fe6b3cbe921e21dcefabc9a5f1cf848cf538a1f27543721b8ca09948aa3"},
 ]
 
-[package.dependencies]
-pbr = ">=2.0.0"
+[[package]]
+name = "tomli-w"
+version = "1.2.0"
+description = "A lil' TOML writer"
+optional = false
+python-versions = ">=3.9"
+groups = ["dev"]
+files = [
+    {file = "tomli_w-1.2.0-py3-none-any.whl", hash = "sha256:188306098d013b691fcadc011abd66727d3c414c571bb01b1a174ba8c983cf90"},
+    {file = "tomli_w-1.2.0.tar.gz", hash = "sha256:2dd14fac5a47c27be9cd4c976af5a12d87fb1f0b4512f81d69cce3b35ae25021"},
+]
 
 [[package]]
 name = "tox"
-version = "4.18.1"
+version = "4.49.1"
 description = "tox is a generic virtualenv management and test command line tool"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.10"
 groups = ["dev"]
 files = [
-    {file = "tox-4.18.1-py3-none-any.whl", hash = "sha256:35d472032ee1f73fe20c3e0e73d7073a4e85075c86ff02c576f9fc7c6a15a578"},
-    {file = "tox-4.18.1.tar.gz", hash = "sha256:3c0c96bc3a568a5c7e66387a4cfcf8c875b52e09f4d47c9f7a277ec82f1a0b11"},
+    {file = "tox-4.49.1-py3-none-any.whl", hash = "sha256:6dd2d7d4e4fd5895ce4ea20e258fce0d4b81e914b697d116a5ab0365f8303bad"},
+    {file = "tox-4.49.1.tar.gz", hash = "sha256:4130d02e1d53648d7107d121ed79f69a27b717817c5e9da521d50319dd261212"},
 ]
 
 [package.dependencies]
-cachetools = ">=5.5"
-chardet = ">=5.2"
+cachetools = ">=7.0.3"
 colorama = ">=0.4.6"
-filelock = ">=3.15.4"
-packaging = ">=24.1"
-platformdirs = ">=4.2.2"
-pluggy = ">=1.5"
-pyproject-api = ">=1.7.1"
-virtualenv = ">=20.26.3"
+filelock = ">=3.25"
+packaging = ">=26"
+platformdirs = ">=4.9.4"
+pluggy = ">=1.6"
+pyproject-api = ">=1.10"
+tomli-w = ">=1.2"
+virtualenv = ">=21.1"
 
 [package.extras]
-docs = ["furo (>=2024.8.6)", "sphinx (>=8.0.2)", "sphinx-argparse-cli (>=1.17)", "sphinx-autodoc-typehints (>=2.4)", "sphinx-copybutton (>=0.5.2)", "sphinx-inline-tabs (>=2023.4.21)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=24.8)"]
-testing = ["build[virtualenv] (>=1.2.2)", "covdefaults (>=2.3)", "detect-test-pollution (>=1.2)", "devpi-process (>=1)", "diff-cover (>=9.1.1)", "distlib (>=0.3.8)", "flaky (>=3.8.1)", "hatch-vcs (>=0.4)", "hatchling (>=1.25)", "psutil (>=6)", "pytest (>=8.3.2)", "pytest-cov (>=5)", "pytest-mock (>=3.14)", "pytest-xdist (>=3.6.1)", "re-assert (>=1.1)", "setuptools (>=74.1.2)", "time-machine (>=2.15) ; implementation_name != \"pypy\"", "wheel (>=0.44)"]
+completion = ["argcomplete (>=3.6.3)"]
 
 [[package]]
 name = "typing-extensions"
@@ -1072,24 +1228,21 @@ files = [
 
 [[package]]
 name = "virtualenv"
-version = "20.36.1"
+version = "21.2.0"
 description = "Virtual Python Environment builder"
 optional = false
 python-versions = ">=3.8"
 groups = ["dev"]
 files = [
-    {file = "virtualenv-20.36.1-py3-none-any.whl", hash = "sha256:575a8d6b124ef88f6f51d56d656132389f961062a9177016a50e4f507bbcc19f"},
-    {file = "virtualenv-20.36.1.tar.gz", hash = "sha256:8befb5c81842c641f8ee658481e42641c68b5eab3521d8e092d18320902466ba"},
+    {file = "virtualenv-21.2.0-py3-none-any.whl", hash = "sha256:1bd755b504931164a5a496d217c014d098426cddc79363ad66ac78125f9d908f"},
+    {file = "virtualenv-21.2.0.tar.gz", hash = "sha256:1720dc3a62ef5b443092e3f499228599045d7fea4c79199770499df8becf9098"},
 ]
 
 [package.dependencies]
 distlib = ">=0.3.7,<1"
-filelock = {version = ">=3.20.1,<4", markers = "python_version >= \"3.10\""}
+filelock = {version = ">=3.24.2,<4", markers = "python_version >= \"3.10\""}
 platformdirs = ">=3.9.1,<5"
-
-[package.extras]
-docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.2,!=7.3)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"]
-test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.4)", "pytest-env (>=0.8.2)", "pytest-freezer (>=0.4.8) ; platform_python_implementation == \"PyPy\" or platform_python_implementation == \"GraalVM\" or platform_python_implementation == \"CPython\" and sys_platform == \"win32\" and python_version >= \"3.13\"", "pytest-mock (>=3.11.1)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10) ; platform_python_implementation == \"CPython\""]
+python-discovery = ">=1"
 
 [metadata]
 lock-version = "2.1"

From f19a370dafa6309d5b6904fd1c094084a1e768d0 Mon Sep 17 00:00:00 2001
From: GlebRysev-UKKA <gleb.rysev@ukkidney.org>
Date: Mon, 16 Mar 2026 10:41:52 +0000
Subject: [PATCH 15/20] ci: don't test on ubuntu

---
 .github/workflows/python_test.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/python_test.yml b/.github/workflows/python_test.yml
index c49a08b..e4d75a3 100644
--- a/.github/workflows/python_test.yml
+++ b/.github/workflows/python_test.yml
@@ -19,7 +19,7 @@ jobs:
     with:  
       python_versions: '["3.12"]'
 
-      os: '["windows-latest", "ubuntu-latest"]'
+      os: '["windows-latest"]'
       package_manager_command: "pip install poetry"
       install_command: "poetry install"
       test_command: "poetry run tox"

From 07bf81845d0d83c78d36f11c099669e7045d23da Mon Sep 17 00:00:00 2001
From: GlebRysev-UKKA <gleb.rysev@ukkidney.org>
Date: Mon, 16 Mar 2026 10:52:54 +0000
Subject: [PATCH 16/20] fix: add removal metadata

---
 ukrr_models/rr_models.py | 13 ++++++++++++-
 ukrr_models/utils.py     |  2 +-
 2 files changed, 13 insertions(+), 2 deletions(-)

diff --git a/ukrr_models/rr_models.py b/ukrr_models/rr_models.py
index 89795c3..d947f25 100644
--- a/ukrr_models/rr_models.py
+++ b/ukrr_models/rr_models.py
@@ -212,7 +212,18 @@ class UKRR_Deleted_Patient(Base):
 
     audit_date: Mapped[Optional[datetime]] = mapped_column("AUDIT_DATE", DateTime)
     audit_time: Mapped[Optional[int]] = mapped_column("AUDIT_TIME", Numeric(8, 0))
-
+    
+    AUTHORISED_BY: Mapped[str] = mapped_column("AUTHORISED_BY", String)
+    authorised_by: Mapped[str] = synonym("AUTHORISED_BY")
+    
+    USERNAME: Mapped[str] = mapped_column("USERNAME", String)
+    username: Mapped[str] = synonym("USERNAME")
+    
+    DESCRIPTION: Mapped[str] = mapped_column("DESCRIPTION", String)
+    description: Mapped[str] = synonym("DESCRIPTION")
+    
+    DUPLICATE_RR_NO: Mapped[Optional[int]] = mapped_column("DUPLICATE_RR_NO", Integer)
+    duplicate_rr_no: Mapped[Optional[int]] = synonym("DUPLICATE_RR_NO")
 
 class QuarterlyTreatment(Base):
     __tablename__ = "QUARTERLY_TREATMENT"
diff --git a/ukrr_models/utils.py b/ukrr_models/utils.py
index ff72333..2d5ae20 100644
--- a/ukrr_models/utils.py
+++ b/ukrr_models/utils.py
@@ -103,7 +103,7 @@ def delete_patient(
 
     args = parser.parse_args()
 
-    database = SQLServerDatabase.connect(server="RR-SQL-Test", database="renalreg")
+    database = SQLServerDatabase.connect(data_source="RR-SQL-Test", database="renalreg")
     table_desc = database.table_definitions()
     with database.session as session:
         print(

From 8b1bb47af145ce4e0d1f83d992b3fbc422efb272 Mon Sep 17 00:00:00 2001
From: GlebRysev-UKKA <gleb.rysev@ukkidney.org>
Date: Mon, 16 Mar 2026 11:08:08 +0000
Subject: [PATCH 17/20] ci: tox

---
 tox.ini                  | 2 +-
 ukrr_models/rr_models.py | 9 +++++----
 2 files changed, 6 insertions(+), 5 deletions(-)

diff --git a/tox.ini b/tox.ini
index 2c370f8..07d0175 100644
--- a/tox.ini
+++ b/tox.ini
@@ -1,6 +1,6 @@
 [tox]
 isolated_build = true
-envlist = py{39, 310, 311}, ruff_format, ruff_lint, mypy, bandit, 
+envlist = py{312}, ruff_format, ruff_lint, mypy, bandit, 
 
 [testenv]
 allowlist_externals = poetry
diff --git a/ukrr_models/rr_models.py b/ukrr_models/rr_models.py
index d947f25..7e3bc20 100644
--- a/ukrr_models/rr_models.py
+++ b/ukrr_models/rr_models.py
@@ -212,19 +212,20 @@ class UKRR_Deleted_Patient(Base):
 
     audit_date: Mapped[Optional[datetime]] = mapped_column("AUDIT_DATE", DateTime)
     audit_time: Mapped[Optional[int]] = mapped_column("AUDIT_TIME", Numeric(8, 0))
-    
+
     AUTHORISED_BY: Mapped[str] = mapped_column("AUTHORISED_BY", String)
     authorised_by: Mapped[str] = synonym("AUTHORISED_BY")
-    
+
     USERNAME: Mapped[str] = mapped_column("USERNAME", String)
     username: Mapped[str] = synonym("USERNAME")
-    
+
     DESCRIPTION: Mapped[str] = mapped_column("DESCRIPTION", String)
     description: Mapped[str] = synonym("DESCRIPTION")
-    
+
     DUPLICATE_RR_NO: Mapped[Optional[int]] = mapped_column("DUPLICATE_RR_NO", Integer)
     duplicate_rr_no: Mapped[Optional[int]] = synonym("DUPLICATE_RR_NO")
 
+
 class QuarterlyTreatment(Base):
     __tablename__ = "QUARTERLY_TREATMENT"
 

From df94614a30438fe2f7644744844d5c68862a0fac Mon Sep 17 00:00:00 2001
From: GlebRysev-UKKA <gleb.rysev@ukkidney.org>
Date: Mon, 16 Mar 2026 11:54:32 +0000
Subject: [PATCH 18/20] fix: typo

---
 ukrr_models/utils.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/ukrr_models/utils.py b/ukrr_models/utils.py
index 2d5ae20..40aeb08 100644
--- a/ukrr_models/utils.py
+++ b/ukrr_models/utils.py
@@ -55,12 +55,12 @@ def delete_patient(
 
     print("Adding %s to DELETED_PATIENTS..." % rrno)
 
-    patinet_params: dict[str, object] = {
+    patient_params: dict[str, object] = {
         rename_map.get(col, col): getattr(patient, rename_map.get(col, col))
         for col in shared_cols
     }
 
-    patinet_params.update(
+    patient_params.update(
         {
             "USERNAME": username,
             "AUTHORISED_BY": authorised_by,

From 4611fbc8fcb3a5c5b4b12ce79f5aca1b12655186 Mon Sep 17 00:00:00 2001
From: GlebRysev-UKKA <gleb.rysev@ukkidney.org>
Date: Mon, 16 Mar 2026 11:57:43 +0000
Subject: [PATCH 19/20] fix: print full traceback on error

---
 ukrr_models/utils.py | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/ukrr_models/utils.py b/ukrr_models/utils.py
index 40aeb08..420ec2c 100644
--- a/ukrr_models/utils.py
+++ b/ukrr_models/utils.py
@@ -1,4 +1,5 @@
 import argparse
+import traceback
 from sqlalchemy import select
 from typing import Optional, Any
 from sqlalchemy.orm import Session
@@ -71,7 +72,7 @@ def delete_patient(
 
     deleted_patient_params: dict[str, Any] = {
         key: value
-        for key, value in patinet_params.items()
+        for key, value in patient_params.items()
         if key in deleted_patient_columns
     }
 
@@ -85,6 +86,7 @@ def delete_patient(
         session.commit()
     except SQLAlchemyError:
         session.rollback()
+        traceback.print_exc()
         raise DeletePatientError(
             f"Error adding patient (RR_NO={rrno}) to DELETED_PATIENTS"
         )

From bf91935e4e7ff78a9d80c147aa95dc83c2bb6515 Mon Sep 17 00:00:00 2001
From: GlebRysev-UKKA <gleb.rysev@ukkidney.org>
Date: Mon, 16 Mar 2026 12:10:59 +0000
Subject: [PATCH 20/20] refactor: use database functions for audit date and
 time

---
 ukrr_models/utils.py | 30 +++++++++++-------------------
 1 file changed, 11 insertions(+), 19 deletions(-)

diff --git a/ukrr_models/utils.py b/ukrr_models/utils.py
index 420ec2c..a487486 100644
--- a/ukrr_models/utils.py
+++ b/ukrr_models/utils.py
@@ -1,29 +1,13 @@
 import argparse
 import traceback
+from sqlalchemy import text
 from sqlalchemy import select
 from typing import Optional, Any
 from sqlalchemy.orm import Session
 from sqlalchemy.exc import SQLAlchemyError
-from sqlalchemy import func, cast, Date, text
 from rr_database.sqlserver import SQLServerDatabase
-
 from ukrr_models.rr_models import UKRRPatient, UKRR_Deleted_Patient
 
-
-def audit_date_expression():
-    return cast(func.getdate(), Date)
-
-
-def audit_time_expression():
-    """
-    Return time in format 1945 (for 19:45) or 0705 (for 07:05)
-    """
-    return text(
-        "RIGHT('0' + CAST(DATEPART(hour, GETDATE()) AS VARCHAR(2)), 2) + "
-        "RIGHT('0' + CAST(DATEPART(minute, GETDATE()) AS VARCHAR(2)), 2)"
-    )
-
-
 class DeletePatientError(Exception):
     pass
 
@@ -35,6 +19,8 @@ def delete_patient(
     authorised_by: str,
     reason: str,
     duplicate_rrno: Optional[str] = None,
+    audit_date: Optional[str] = None,
+    audit_time: Optional[str] = None,
 ):
     """Delete a patient."""
     print(f"Deleting {rrno}...")
@@ -77,8 +63,8 @@ def delete_patient(
     }
 
     deleted_patient = UKRR_Deleted_Patient(**deleted_patient_params)
-    deleted_patient.audit_date = audit_date_expression()
-    deleted_patient.audit_time = audit_time_expression()
+    deleted_patient.audit_date = audit_date
+    deleted_patient.audit_time = audit_time
 
     try:
         session.add(deleted_patient)
@@ -107,6 +93,10 @@ def delete_patient(
 
     database = SQLServerDatabase.connect(data_source="RR-SQL-Test", database="renalreg")
     table_desc = database.table_definitions()
+    
+    # Audit datetime metadata
+    audit_date = text(database.audit_date()) 
+    audit_time = text(database.audit_time())
     with database.session as session:
         print(
             f"Deleting patient {args.rrno}, authorised by {args.authorised_by} for reason {args.reason}"
@@ -118,4 +108,6 @@ def delete_patient(
             authorised_by=args.authorised_by,
             reason=args.reason,
             duplicate_rrno=args.duplicate_rrno,
+            audit_date=audit_date,
+            audit_time=audit_time,
         )