pepdbagent/pyproject.toml at master · pepkit/pepdbagent · GitHub

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[project]
name = "pepdbagent"
version = "0.13.0"
description = "A python-based database manager for portable encapsulated projects"
readme = "README.md"
license = "BSD-2-Clause"
requires-python = ">=3.10"
authors = [
    { name = "Oleksandr Khoroshevskyi" },
]
keywords = ["project", "metadata", "bioinformatics", "database"]
classifiers = [
    "Development Status :: 4 - Beta",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]
dependencies = [
    "sqlalchemy>=2.0.0",
    "logmuse>=0.2.7",
    "peprs>=0.2.1",
    "ubiquerg>=0.6.2",
    "coloredlogs>=15.0.1",
    "pydantic>=2.0",
    "psycopg>=3.1.15",
    "numpy>=1.24.4",
    "alembic>=1.15.1",
]

[project.urls]
Homepage = "https://github.com/pepkit/pepdbagent/"

[project.optional-dependencies]
test = [
    "pytest",
    "pytest-mock",
    "python-dotenv",
    "coverage",
    "smokeshow",
    "pyyaml",
    "pandas",
]

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[tool.pytest.ini_options]
addopts = "-rfE"
testpaths = ["tests"]

[tool.ruff]
line-length = 88

[tool.ruff.lint]
select = ["E", "F", "I"]
ignore = ["F403", "F405", "E501"]

[tool.ruff.lint.isort]
known-first-party = ["pepdbagent"]

[tool.ruff.lint.per-file-ignores]
"pepdbagent/alembic/env.py" = ["E402"]