diff --git a/ridgeback/__init__.py b/ridgeback/__init__.py index 0b167e61..edc60b35 100644 --- a/ridgeback/__init__.py +++ b/ridgeback/__init__.py @@ -1 +1 @@ -__version__ = "2.1.5" +__version__ = "2.1.6" diff --git a/ridgeback/settings.py b/ridgeback/settings.py index d70a7097..d82545b7 100644 --- a/ridgeback/settings.py +++ b/ridgeback/settings.py @@ -304,6 +304,7 @@ TOIL_STATE_POLLING_WAIT = os.environ.get("TOIL_STATE_POLLING_WAIT", 60) TOIL_MAX_CORES = os.environ.get("RIDGEBACK_TOIL_MAX_CORES", "40") TOIL_DEFAULT_MEMORY = os.environ.get("RIDGEBACK_TOIL_DEFAULT_MEMORY", "8G") +TOIL_JOB_STORE_TIMEOUT = os.environ.get("RIDGEBACK_TOIL_JOB_STORE_TIMEOUT", "1800") SINGLE_MACHINE_CORES = os.environ.get("RIDGEBACK_SINGLE_MACHINE_CORES", 16) SINGLE_MACHINE_MEMORY = os.environ.get("RIDGEBACK_SINGLE_MACHINE_MEMORY", 25) diff --git a/submitter/toil_submitter/toil_jobsubmitter.py b/submitter/toil_submitter/toil_jobsubmitter.py index b64f7eda..bee9eef6 100644 --- a/submitter/toil_submitter/toil_jobsubmitter.py +++ b/submitter/toil_submitter/toil_jobsubmitter.py @@ -263,7 +263,7 @@ def _command_line(self): "--maxCores", settings.TOIL_MAX_CORES, "--jobStoreTimeout", - "600", + settings.TOIL_JOB_STORE_TIMEOUT, "--maxMemory", "256G", "--not-strict", @@ -314,7 +314,7 @@ def _command_line(self): "--maxCores", settings.TOIL_MAX_CORES, "--jobStoreTimeout", - "600", + settings.TOIL_JOB_STORE_TIMEOUT, "--maxMemory", "256G", "--not-strict",