support T2T-CHM13 genome

[DayTimeMouse]

Hi,

Does facets support T2T-CHM13 genome? Or, how can I use T2T-CHM13 as ref genome?

Best regards.

[kojix2]

To my understanding, Facets performs corrections based on GC content and relies on the pctGCdata library. This pctGCdata may not correspond to the T2T reference genome.