From 0eb17e5324542f971d75acd8cfced718f9ec7fae Mon Sep 17 00:00:00 2001 From: Nikhil Kumar Date: Wed, 26 Aug 2026 14:25:34 -0400 Subject: [PATCH 1/2] Update Phylowgs version to 1.5.1-msk --- containers/phylowgs/v1.5-msk/Dockerfile | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/containers/phylowgs/v1.5-msk/Dockerfile b/containers/phylowgs/v1.5-msk/Dockerfile index cdc356a..5a9987c 100644 --- a/containers/phylowgs/v1.5-msk/Dockerfile +++ b/containers/phylowgs/v1.5-msk/Dockerfile @@ -6,14 +6,14 @@ LABEL org.opencontainers.image.vendor="MSKCC-OMICS-WORKFLOWS" \ org.opencontainers.image.created="2025-08-21T11:07:00Z" \ imageprivacy="False" \ org.opencontainers.image.licenses="GPL-3.0" \ - org.opencontainers.image.version="1.5-msk" \ + org.opencontainers.image.version="1.5.1-msk" \ org.opencontainers.image.source="https://github.com/mskcc/phylowgs" \ org.opencontainers.image.url="https://github.com/mskcc-omics-workflows/containers/containers/phylowgs/" \ org.opencontainers.image.title="Phylowgs" \ org.opencontainers.image.description="Application for inferring subclonal composition and evolution from whole-genome sequencing data." ENV DEBIAN_FRONTEND=noninteractive -ENV PHYLOWGS_TAG="v1.5-msk" +ENV PHYLOWGS_TAG="v1.5.1-msk" ARG TARGETPLATFORM RUN apt-get update -y \ @@ -23,7 +23,7 @@ RUN apt-get update -y \ && curl https://bootstrap.pypa.io/pip/2.7/get-pip.py --output /tmp/get-pip.py \ && python2 /tmp/get-pip.py \ # Install phylowgs - && git clone --branch 1.5 https://github.com/mskcc/phylowgs /tmp/phylowgs \ + && git clone --branch 1.5.1 https://github.com/mskcc/phylowgs /tmp/phylowgs \ && pip2 install --no-cache-dir -r /tmp/phylowgs/requirements.txt \ && cp -r /tmp/phylowgs/ /usr/bin \ && g++ -I/usr/bin/phylowgs -o /usr/bin/phylowgs/mh.o -O3 /usr/bin/phylowgs/mh.cpp /usr/bin/phylowgs/util.cpp -I/usr/include -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm \ @@ -31,4 +31,4 @@ RUN apt-get update -y \ && rm -r /tmp/phylowgs \ && apt-get clean \ && apt-get purge \ - && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* \ No newline at end of file + && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* From f5f23cc2ddd7b9b0e7e4f86000f24cfbf43a9d77 Mon Sep 17 00:00:00 2001 From: Nikhil Kumar Date: Wed, 26 Aug 2026 15:36:30 -0400 Subject: [PATCH 2/2] Updated phylowgs version --- containers/phylowgs/{v1.5-msk => v1.5.1-msk}/Dockerfile | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename containers/phylowgs/{v1.5-msk => v1.5.1-msk}/Dockerfile (100%) diff --git a/containers/phylowgs/v1.5-msk/Dockerfile b/containers/phylowgs/v1.5.1-msk/Dockerfile similarity index 100% rename from containers/phylowgs/v1.5-msk/Dockerfile rename to containers/phylowgs/v1.5.1-msk/Dockerfile