diff --git a/inst/assets/bibliography.bib b/inst/assets/bibliography.bib index d660e234..33085892 100644 --- a/inst/assets/bibliography.bib +++ b/inst/assets/bibliography.bib @@ -3083,3 +3083,12 @@ @article{Medearis2026 urldate = {2026-01-12}, year = {2026} } + +@Book{Yu2023, + author = {Guangchuang Yu}, + title = {Data Integration, Manipulation and Visualization of + Phylogenetic Trees}, + publisher = {Chapman and Hall/CRC}, + year = {2023}, + url = {https://yulab-smu.top/treedata-book/} +} diff --git a/inst/pages/taxonomy.qmd b/inst/pages/taxonomy.qmd index bf4f2f78..85d75042 100644 --- a/inst/pages/taxonomy.qmd +++ b/inst/pages/taxonomy.qmd @@ -279,7 +279,10 @@ setTaxonomyRanks(ranks) ## Visualizing phylogeny The `plotRowTree()` function from the `r BiocStyle::Biocpkg("miaViz")` package -provides a convenient way to visualize the phylogeny. +provides a convenient way to visualize the phylogeny. For more advanced +tree-data integration and visualization techniques, see Yu's book +[*Data Integration, Manipulation and Visualization of Phylogenetic Trees*](https://yulab-smu.top/treedata-book/), +especially the chapter on [plotting trees with data](https://yulab-smu.top/treedata-book/chapter7.html) [@Yu2023]. ```{r} #| label: plot_phylogeny1