book.bib

@article{carpenter2017stan,
  title={Stan: A probabilistic programming language},
  author={Carpenter, Bob and Gelman, Andrew and Hoffman, Matthew D and Lee, Daniel and Goodrich, Ben and Betancourt, Michael and Brubaker, Marcus and Guo, Jiqiang and Li, Peter and Riddell, Allen},
  journal={Journal of statistical software},
  volume={76},
  number={1},
  year={2017},
  publisher={Columbia Univ., New York, NY; Harvard Univ., Cambridge, MA},
  doi={10.18637/jss.v076.i01}
}
@article{denwood2016runjags,
  title={runjags: An R package providing interface utilities, model templates, parallel computing methods and additional distributions for MCMC models in JAGS},
  author={Denwood, Matthew J and others},
  journal={Journal of Statistical Software},
  volume={71},
  number={9},
  pages={1--25},
  year={2016},
  publisher={Foundation for Open Access Statistics},
  doi={10.18637/jss.v071.i09}
}
@manual{dooley2020gridded,
  title={Gridded maps of building patterns throughout sub-Saharan Africa, version 1.0.},
  author={Dooley, Claire A and Tatem, Andrew J},
  year={2020},
  publisher={WorldPop Research Group, University of Southampton},
  doi={10.5258/SOTON/WP00666},
  url={https://dx.doi.org/10.5258/SOTON/WP00666}
}
@manual{ecopia2020digitize,
  title={Digitize Africa data},
  author={{Ecopia.AI} and {Maxar Technologies}},
  year={2019}
}
@misc{OpenStreetMap,
   author = {{OpenStreetMap contributors}},
   title = {{Planet dump retrieved from https://planet.osm.org }},
   howpublished = "\url{ https://www.openstreetmap.org }",
   year = {2017},
 }
@article{gelman1992inference,
  title={Inference from iterative simulation using multiple sequences},
  author={Gelman, Andrew and Rubin, Donald B and others},
  journal={Statistical science},
  volume={7},
  number={4},
  pages={457--472},
  year={1992},
  doi={10.1214/ss/1177011136}
}
@article{jochem2020classifying,
  title={Classifying settlement types from multi-scale spatial patterns of building footprints},
  author={Jochem, Warren C and Leasure, Douglas R and Pannell, Oliver and Chamberlain, Heather R and Jones, Patricia and Tatem, Andrew J},
  journal={Environment and Planning B: Urban Analytics and City Science},
  year={2020},
  doi={10.1177/2399808320921208}
}
@book{krainski2018advanced,
  title={Advanced spatial modeling with stochastic partial differential equations using R and INLA},
  author={Elias T Krainski and Virgilio Gómez-Rubio and Haakon Bakka and Amanda Lenzi and Daniela Castro-Camilo and Daniel Simpson and Finn Lindgren and Håvard Rue},
  year={2018},
  url={https://becarioprecario.bitbucket.io/spde-gitbook/}
}
@manual{leasure2020peanutButter,
  title={{p}eanutButter: An R package to produce rapid-response gridded population estimates from building footprints, version 0.1.0.},
  author={Leasure, Douglas R and Dooley, Claire A and Bondarenko Maksym and Tatem, Andrew J},
  year={2020},
  publisher={WorldPop Research Group, University of Southampton},
  doi={10.5258/SOTON/WP00667},
  url={https://github.com/wpgp/peanutButter}
}
@manual{leasure2020wopr,
  title={{w}opr: An R package to query the WorldPop Open Population Repository, version 0.2.0.},
  author={Leasure, Douglas R and Bondarenko, Maksym and Tatem, Andrew J},
  year={2020},
  publisher={WorldPop Research Group, University of Southampton},
  doi={10.5258/SOTON/WP00664},
  url={https://github.com/wpgp/wopr}
}
@article{lindgren2015bayesian,
  title={Bayesian Spatial Modelling with R-INLA},
  author={Finn Lindgren and Havard Rue},
  year={2015},
  journal={Journal of Statistical Software},
  volume={63},
  number={19},
  pages={1--25},
  doi={10.18637/jss.v063.i19}
}
@article{lloyd2019global,
  title={Global spatio-temporally harmonised datasets for producing high-resolution gridded population distribution datasets},
  author={Lloyd, Christopher T and Chamberlain, Heather and Kerr, David and Yetman, Greg and Pistolesi, Linda and Stevens, Forrest R and Gaughan, Andrea E and Nieves, Jeremiah J and Hornby, Graeme and MacManus, Kytt and others},
  journal={Big earth data},
  volume={3},
  number={2},
  pages={108--139},
  year={2019},
  doi={10.1080/20964471.2019.1625151}
}
@inproceedings{plummer2003jags,
  title={JAGS: A program for analysis of Bayesian graphical models using Gibbs sampling},
  author={Plummer, Martyn and others},
  booktitle={Proceedings of the 3rd international workshop on distributed statistical computing},
  volume={124},
  number={125.10},
  pages={1--10},
  year={2003},
  organization={Vienna, Austria.},
  url={http://mcmc-jags.sourceforge.net/}
}
@Manual{r2020r,
    title = {R: A Language and Environment for Statistical Computing},
    author = {{R Core Team}},
    organization = {R Foundation for Statistical Computing},
    address = {Vienna, Austria},
    year = {2020},
    url = {https://www.R-project.org/},
  }
@Misc{stan2020rstan,
    title = {{RStan}: the {R} interface to {Stan}},
    author = {{Stan Development Team}},
    note = {R package version 2.19.3},
    year = {2020},
    url = {http://mc-stan.org/},
  }
@article{stevens2015disaggregating,
  title={Disaggregating census data for population mapping using random forests with remotely-sensed and ancillary data},
  author={Stevens, Forrest R and Gaughan, Andrea E and Linard, Catherine and Tatem, Andrew J},
  journal={PloS one},
  volume={10},
  number={2},
  year={2015},
  publisher={Public Library of Science},
  doi={10.1371/journal.pone.0107042},
  url={https://doi.org/10.1371/journal.pone.0107042}
}
@article{utazi2019mapping,
  title={Mapping vaccination coverage to explore the effects of delivery mechanisms and inform vaccination strategies},
  author={Utazi, C Edson and Thorley, Julia and Alegana, Victor A and Ferrari, Matthew J and Takahashi, Saki and Metcalf, C Jessica E and Lessler, Justin and Cutts, Felicity T and Tatem, Andrew J},
  journal={Nature communications},
  volume={10},
  number={1},
  pages={1--10},
  year={2019},
  doi={10.1038/s41467-019-09611-1}
}
@article{wardrop2018spatially,
  title={Spatially disaggregated population estimates in the absence of national population and housing census data},
  author={Wardrop, NA and Jochem, WC and Bird, TJ and Chamberlain, HR and Clarke, D and Kerr, D and Bengtsson, L and Juran, S and Seaman, V and Tatem, AJ},
  journal={Proceedings of the National Academy of Sciences},
  volume={115},
  number={14},
  pages={3529--3537},
  year={2018},
  publisher={National Acad Sciences},
  doi={10.1073/pnas.1715305115},
  url={https://doi.org/10.1073/pnas.1715305115}
}
@article{worldpop2018global,
  author={{WorldPop (www.worldpop.org - School of Geography and Environmental Science, University of Southampton} and {Department of Geography and Geosciences, University of Louisville} and {Departement de Geographie, Universite de Namur} and {Center for International Earth Science Information Network (CIESIN), Columbia University}},
  year={2018},
  title={Global High Resolution Population Denominators Project - Funded by The Bill and Melinda Gates Foundation (OPP1134076)},
  doi={10.5258/SOTON/WP00645}
}
@Book{xie2015dynamic,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {http://yihui.name/knitr/},
}
@Manual{xie2020bookdown,
    title = {bookdown: Authoring Books and Technical Documents with R Markdown},
    author = {Yihui Xie},
    year = {2020},
    note = {R package version 0.18},
    url = {https://github.com/rstudio/bookdown},
  }