cli-coverage.yml

name: test coverage

on:
  push:
    branches: [master, dev]

jobs:
  cli-coverage-report:
    strategy:
      matrix:
        python-version: ["3.12"]
        os: [ubuntu-latest] # can't use macOS when using service containers or container jobs
    runs-on: ${{ matrix.os }}
    services:
      postgres:
        image: postgres
        env:
          POSTGRES_USER: postgres
          POSTGRES_PASSWORD: docker
          POSTGRES_DB: bedbase
          POSTGRES_HOST: localhost
        ports:
          - 5432:5432
        options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5

    steps:
      - uses: actions/checkout@v6

      - uses: actions/setup-python@v6
        with:
          python-version: '3.12'

      - name: Install uv
        run: pip install uv

      - name: Install package with test dependencies
        run: uv pip install ".[test]" --system

      - name: Run tests
        run: coverage run -m pytest

      - name: build coverage
        run: coverage html -i

      - run: smokeshow upload htmlcov
        env:
          SMOKESHOW_GITHUB_STATUS_DESCRIPTION: Coverage {coverage-percentage}
          SMOKESHOW_GITHUB_COVERAGE_THRESHOLD: 35
          SMOKESHOW_GITHUB_CONTEXT: coverage
          SMOKESHOW_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
          SMOKESHOW_GITHUB_PR_HEAD_SHA: ${{ github.event.pull_request.head.sha }}
          SMOKESHOW_AUTH_KEY: ${{ secrets.SMOKESHOW_AUTH_KEY }}