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update dev tree (#347)
* update dev tree * chore: auto-generate tree artifacts --------- Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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‎trees/oncotree_development.json‎

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‎trees/tsv/oncotree_development.txt‎

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@@ -613,7 +613,7 @@ LGFMS LightYellow Low-Grade Fibromyxoid Sarcoma Soft Tissue Sarcoma C1275282 C45
613613
ISM LightSalmon Indolent Systemic Mastocytosis Mastocytosis C0272203 C9286 Hematopoietic SM
614614
LUPC Gainsboro Pleomorphic Carcinoma of the Lung Non-Small Cell Lung Cancer C1711397 C45542 Lung NSCLC
615615
PADA DarkRed Pleomorphic Adenoma Salivary Gland Cancer Head and Neck SACA
616-
DCIS HotPink Breast Ductal Carcinoma In Situ Breast Cancer C0007124 C2924 Breast BREAST
616+
DCIS HotPink Breast Ductal Carcinoma In Situ Breast Cancer C0007124 C2924 Breast BRPRE
617617
PAC DarkRed Polymorphous Adenocarcinoma Salivary Gland Cancer Head and Neck SACA
618618
MF LightYellow Myofibroma Soft Tissue Sarcoma C1266121 C7052 Soft Tissue SOFT_TISSUE
619619
SCCNOS Black Squamous Cell Carcinoma, NOS Cancer of Unknown Primary Other CUP
@@ -836,7 +836,7 @@ LUNE Gainsboro Large Cell Neuroendocrine Carcinoma Non-Small Cell Lung Cancer C1
836836
PLSMESO Blue Pleural Mesothelioma, Sarcomatoid Type Mesothelioma Pleura PLMESO
837837
HGGNOS Gray High-Grade Glioma, NOS Glioma CNS/Brain DIFG
838838
MCC Black Merkel Cell Carcinoma Skin Cancer, Non-Melanoma C0007129 C9231 Skin SKIN
839-
PREBE lavender Barrett's Esophagus: Pre-Malignant Pre-malignant Cancer Esophagus/Stomach STOMACH
839+
PREBE lavender Barrett's Esophagus Pre-malignant Cancer Esophagus/Stomach EPRE
840840
PREHGD lavender High-Grade Dysplasia of the Esophagus/Stomach Pre-malignant Cancer Esophagus/Stomach STOMACH
841841
MLNJAK2 LightSalmon Myeloid/Lymphoid Neoplasms with JAK2 Rearrangement Leukemia Hematopoietic MLNER
842842
ARCH Black Adenocarcinoma in Retrorectal Cystic Hamartoma Adenocarcinoma in Retrorectal Cystic Hamartoma Other OTHER
@@ -933,7 +933,7 @@ MPALBTM LightSalmon Mixed-Phenotype Acute Leukemia, B/T/Myeloid Leukemia Hemat
933933
MPALTMK LightSalmon Mixed-Phenotype Acute Leukemia, T/Megakaryocytic Leukemia Hematopoietic MPALR
934934
ALALNOS LightSalmon Acute Leukemia of Ambiguous Lineage, NOS Leukemia Hematopoietic ALALDI
935935
TLTP LimeGreen Tumor-Like Lesions with T-Cell Predominance T-cell and NK-cell lymphoid proliferations and lymphomas Hematopoietic TNLPL
936-
KFD LimeGreen Kikuchi–Fujimoto Disease T-cell and NK-cell lymphoid proliferations and lymphomas Hematopoietic TLTP
936+
KFD LimeGreen Kikuchi-Fujimoto Disease T-cell and NK-cell lymphoid proliferations and lymphomas Hematopoietic TLTP
937937
ALPS LimeGreen Autoimmune Lymphoproliferative Syndrome T-cell and NK-cell lymphoid proliferations and lymphomas Hematopoietic TLTP
938938
ALPSGFAS LimeGreen ALPS with Germline Homozygous or Heterozygous FAS Mutation T-cell and NK-cell lymphoid proliferations and lymphomas Hematopoietic ALPS
939939
ALPSSFAS LimeGreen ALPS with Somatic FAS Mutation T-cell and NK-cell lymphoid proliferations and lymphomas Hematopoietic ALPS
@@ -1059,7 +1059,7 @@ CPH Gray Capillary Haemangioma Mesenchymal, Non-Meningothelial Tumors CNS/Brai
10591059
AVM Gray Arteriovenous Malformation Mesenchymal, Non-Meningothelial Tumors CNS/Brain VT
10601060
HB Gray Haemangioblastoma Mesenchymal, Non-Meningothelial Tumors CNS/Brain VT
10611061
TUD Gray Tumors of Uncertain Differentiation Mesenchymal, Non-Meningothelial Tumors CNS/Brain MNMT
1062-
IMTFET-CREB Gray Intracranial Mesenchymal Tumor, FET-CREB Fusion–Positive Mesenchymal, Non-Meningothelial Tumors CNS/Brain TUD
1062+
IMTFET-CREB Gray Intracranial Mesenchymal Tumor, FET-CREB Fusion-Positive Mesenchymal, Non-Meningothelial Tumors CNS/Brain TUD
10631063
PIS Gray Primary Intracranial Sarcoma, DICER1-Mutant Mesenchymal, Non-Meningothelial Tumors CNS/Brain TUD
10641064
ASTR2 Gray Astrocytoma, IDH-Mutant, Grade 2 Gliomas, Glioneuronal Tumors, and Neuronal Tumors CNS/Brain ASTR
10651065
ASTR3 Gray Astrocytoma, IDH-Mutant, Grade 3 Gliomas, Glioneuronal Tumors, and Neuronal Tumors CNS/Brain ASTR
@@ -1107,49 +1107,61 @@ CMPN LightSalmon Non-CML Type Classical MPN Myeloproliferative Neoplasms Hemat
11071107
CFL LimeGreen Classic Follicular Lymphoma B-Cell Lymphoid Proliferations and Lymphomas Hematopoietic FL
11081108
FLPDP LimeGreen Follicular Lymphoma with Predominantly Diffuse Growth Pattern B-Cell Lymphoid Proliferations and Lymphomas Hematopoietic FL
11091109
MLUAD Gainsboro Lung Adenocarcinoma with a Micropapillary Pattern Non-Small Cell Lung Cancer Lung LUAD
1110-
APHGD SaddleBrown Adenomatous Polyp, High-Grade Dysplasia Benign Epithelial Tumors and Precursors Bowel BOWEL
1110+
APHGD SaddleBrown Adenomatous Polyp, High-Grade Dysplasia Benign Epithelial Tumors and Precursors Bowel BPRE
11111111
ADH HotPink Atypical Ductal Hyperplasia Benign Epithelial Proliferations and Precursors Breast BEPP
11121112
ALH HotPink Atypical Lobular Hyperplasia Non-Invasive Lobular Neoplasia Breast BEPP
11131113
CCLFEA HotPink Columnar Cell Lesions, Including Flat Epithelial Atypia Benign Epithelial Proliferations and Precursors Breast BEPP
1114-
BEPP HotPink Benign Epithelial Proliferations and Precursors Benign Epithelial Proliferations and Precursors Breast BREAST
1115-
PANIN Purple Pancreatic Intraepithelial Neoplasia Benign Epithelial Tumors and Precursors Pancreas PANCREAS
1116-
HGPIN Cyan Prostatic Intraepithelial Neoplasia Glandular Neoplasm of the Prostate Prostate PROSTATE
1117-
CSET Teal Squamous Epithelial Tumors Squamous Epithelial Tumors Cervix CERVIX
1114+
BEPP HotPink Benign Epithelial Proliferations and Precursors Benign Epithelial Proliferations and Precursors Breast BRPRE
1115+
PANIN Purple Pancreatic Intraepithelial Neoplasia Benign Epithelial Tumors and Precursors Pancreas PPRE
1116+
HGPIN Cyan Prostatic Intraepithelial Neoplasia Glandular Neoplasm of the Prostate Prostate PRPRE
1117+
CSET Teal Squamous Epithelial Tumors Squamous Epithelial Tumors Cervix CPRE
11181118
LSIL Teal Low-Grade Squamous Intraepithelial Lesion Squamous Epithelial Tumors Cervix CSET
11191119
CIN1 Teal Cervical Intraepithelial Neoplasia, Grade 1 Squamous Epithelial Tumors Cervix LSIL
11201120
HSIL Teal High-Grade Squamous Intraepithelial Lesion Squamous Epithelial Tumors Cervix CSET
11211121
CIN2 Teal Cervical Intraepithelial Neoplasia, Grade 2 Squamous Epithelial Tumors Cervix HSIL
11221122
CIN3 Teal Cervical Intraepithelial Neoplasia, Grade 3 Squamous Epithelial Tumors Cervix HSIL
1123-
HGGD LightSkyBlue High-Grade Gastric Dysplasia Benign Epithelial Tumors and Precursors Esophagus/Stomach STOMACH
1124-
BD Black Bowen Disease Premalignant Keratoses and Precursors Skin SKIN
1125-
AK Black Actinic Keratoses Premalignant Keratoses and Precursors Skin SKIN
1126-
DN Black Dysplastic Nevus Melanocytic Neoplasms Skin SKIN
1127-
SCIS Gainsboro Squamous Dysplasia and Squamous Carcinoma In Situ Squamous Precursor Lesions Lung LUNG
1128-
OED DarkRed Oral Epithelial Dysplasia Oral Epithelial Dysplasia Head and Neck HEAD_NECK
1129-
ASIN SaddleBrown Benign Epithelial Tumors and Precursors Anal Squamous Intraepithelial Neoplasia Bowel BOWEL
1130-
STIC LightBlue Ovarian Serous Tubular Intraepithelial Carcinoma Epithelial precursor lesions Ovary/Fallopian Tube OVARY
1131-
AAH Gainsboro Atypical Adenomatous Hyperplasia Precursor Glandular Lesions Lung LUNG
1132-
UC SaddleBrown Ulcerative Colitis Premalignant Conditions Bowel BOWEL
1133-
CD SaddleBrown Crohn’s Disease Premalignant Conditions Bowel BOWEL
1123+
HGGD LightSkyBlue High-Grade Gastric Dysplasia Benign Epithelial Tumors and Precursors Esophagus/Stomach EPRE
1124+
BD Black Bowen Disease Premalignant Keratoses and Precursors Skin SPRE
1125+
AK Black Actinic Keratoses Premalignant Keratoses and Precursors Skin SPRE
1126+
DN Black Dysplastic Nevus Melanocytic Neoplasms Skin SPRE
1127+
SCIS Gainsboro Squamous Dysplasia and Squamous Carcinoma In Situ Squamous Precursor Lesions Lung LPRE
1128+
OED DarkRed Oral Epithelial Dysplasia Oral Epithelial Dysplasia Head and Neck OPRE
1129+
ASIN SaddleBrown Anal Squamous Intraepithelial Neoplasia Benign Epithelial Tumors and Precursors Bowel BPRE
1130+
STIC LightBlue Ovarian Serous Tubular Intraepithelial Carcinoma Epithelial precursor lesions Ovary/Fallopian Tube OVPRE
1131+
AAH Gainsboro Atypical Adenomatous Hyperplasia Precursor Glandular Lesions Lung LPRE
1132+
UC SaddleBrown Ulcerative Colitis Premalignant Conditions Bowel BPRE
1133+
CD SaddleBrown Crohn's Disease Premalignant Conditions Bowel BPRE
11341134
HELU HotPink Proliferative Disease (Hyperplastic Enlarged Lobular Units) Benign Epithelial Proliferations and Precursors Breast BEPP
1135-
PIA Cyan Prostatic Proliferative Inflammatory Atrophy Benign Epithelial Proliferations and Precursors Prostate PROSTATE
1136-
ASC Teal Cervical Atypical Squamous Cells Squamous Precursor Lesions Cervix CERVIX
1137-
IMB Yellow Intestinal Metaplasia of The Bladder Epithelial Precursor Lesions Bladder/Urinary Tract BLADDER
1138-
PUH Yellow Papillary Urothelial Hyperplasia Benign Epithelial Tumors and Precursors Bladder/Urinary Tract BLADDER
1139-
BCIS Yellow Bladder Carcinoma In Situ Squamous Epithelial Tumors Bladder/Urinary Tract BLADDER
1140-
NIPC Yellow Non-Invasive Papillary Carcinoma Squamous Epithelial Tumors Bladder/Urinary Tract BLADDER
1141-
IMETS LightSkyBlue Intestinal Metaplasia of The Stomach Precursor Glandular Lesions Esophagus/Stomach STOMACH
1142-
XP Black Xeroderma Pigmentosum Premalignant Keratoses and Precursors Skin SKIN
1143-
PKM Black Porokeratosis Melanocytic Premalignant Keratoses and Precursors Skin SKIN
1144-
SML Gainsboro Squamous Metaplasia of The Lung Benign Epithelial Tumors and Precursors Lung LUNG
1145-
OCIS DarkRed Oral Carcinoma In Situ Squamous Epithelial Tumors Head and Neck HEAD_NECK
1146-
OPL DarkRed Oral Premalignant Lesions Squamous Precursor Lesions Head and Neck HEAD_NECK
1135+
PIA Cyan Prostatic Proliferative Inflammatory Atrophy Benign Epithelial Proliferations and Precursors Prostate PRPRE
1136+
ASC Teal Cervical Atypical Squamous Cells Squamous Precursor Lesions Cervix CPRE
1137+
IMB Yellow Intestinal Metaplasia of The Bladder Epithelial Precursor Lesions Bladder/Urinary Tract BUPRE
1138+
PUH Yellow Papillary Urothelial Hyperplasia Benign Epithelial Tumors and Precursors Bladder/Urinary Tract BUPRE
1139+
BCIS Yellow Bladder Carcinoma In Situ Squamous Epithelial Tumors Bladder/Urinary Tract BUPRE
1140+
NIPC Yellow Non-Invasive Papillary Carcinoma Squamous Epithelial Tumors Bladder/Urinary Tract BUPRE
1141+
IMETS LightSkyBlue Intestinal Metaplasia of The Stomach Precursor Glandular Lesions Esophagus/Stomach EPRE
1142+
XP Black Xeroderma Pigmentosum Premalignant Keratoses and Precursors Skin SPRE
1143+
PKM Black Porokeratosis Melanocytic Premalignant Keratoses and Precursors Skin SPRE
1144+
SML Gainsboro Squamous Metaplasia of The Lung Benign Epithelial Tumors and Precursors Lung LPRE
1145+
OCIS DarkRed Oral Carcinoma In Situ Squamous Epithelial Tumors Head and Neck OPRE
1146+
OPL DarkRed Oral Premalignant Lesions Squamous Precursor Lesions Head and Neck OPRE
11471147
LEP DarkRed Leukoplakia Squamous Precursor Lesions Head and Neck OPL
11481148
ERP DarkRed Erythroplakia Squamous Precursor Lesions Head and Neck OPL
11491149
LP DarkRed Lichen Planus Squamous Precursor Lesions Head and Neck OPL
1150-
AIL SaddleBrown Anal Intraepithelial Lesions Squamous Precursor Lesions Bowel BOWEL
1151-
ASCUS SaddleBrown Atypical Squamous Cells of Undetermined Significance Squamous Precursor Lesions Bowel BOWEL
1152-
HPV SaddleBrown HPV Infection Benign Epithelial Proliferations and Precursors Bowel BOWEL
1153-
RIL Orange Renal Intraepithelial Lesions Epithelial Precursor Lesions Kidney KIDNEY
1154-
VHL Orange Von Hippel-Lindau Syndrome Premalignant Keratoses and Precursors Kidney KIDNEY
1155-
SCOUT LightBlue Ovarian Secretory Cell Outgrowths Epithelial Precursor Lesions Ovary/Fallopian Tube OVARY
1150+
AIL SaddleBrown Anal Intraepithelial Lesions Squamous Precursor Lesions Bowel BPRE
1151+
ASCUS SaddleBrown Atypical Squamous Cells of Undetermined Significance Squamous Precursor Lesions Bowel BPRE
1152+
HPV SaddleBrown HPV Infection Benign Epithelial Proliferations and Precursors Bowel BPRE
1153+
RIL Orange Renal Intraepithelial Lesions Epithelial Precursor Lesions Kidney RPRE
1154+
VHL Orange Von Hippel-Lindau Syndrome Premalignant Keratoses and Precursors Kidney RPRE
1155+
SCOUT LightBlue Ovarian Secretory Cell Outgrowths Epithelial Precursor Lesions Ovary/Fallopian Tube OVPRE
1156+
BUPRE Yellow Precursor Lesions Precursor Lesions Bladder/Urinary Tract BLADDER
1157+
BPRE SaddleBrown Precursor Lesions Precursor Lesions Bowel BOWEL
1158+
BRPRE HotPink Precursor Lesions Precursor Lesions Breast BREAST
1159+
CPRE Teal Precursor Lesions Precursor Lesions Cervix CERVIX
1160+
EPRE LightSkyBlue Precursor Lesions Precursor Lesions Esophagus/Stomach STOMACH
1161+
OPRE DarkRed Precursor Lesions Precursor Lesions Head and Neck HEAD_NECK
1162+
RPRE Orange Precursor Lesions Precursor Lesions Kidney KIDNEY
1163+
LPRE Gainsboro Precursor Lesions Precursor Lesions Lung LUNG
1164+
OVPRE LightBlue Precursor Lesions Precursor Lesions Ovary/Fallopian Tube OVARY
1165+
PPRE Purple Precursor Lesions Precursor Lesions Pancreas PANCREAS
1166+
PRPRE Cyan Precursor Lesions Precursor Lesions Prostate PROSTATE
1167+
SPRE Black Precursor Lesions Precursor Lesions Skin SKIN

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