diff --git a/README.md b/README.md
index d93646e64..8c943b3f9 100644
--- a/README.md
+++ b/README.md
@@ -297,38 +297,40 @@ TABLE BELOW IS GENERATED AUTOMATICALLY.
 DO NOT EDIT DIRECTLY.
 -->
 
-| name                                                                                                        | description                                                                                 | datatypes                       | suffixes                                                                                                       | link to full data                                              | maintained by                              |
-|:------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------|:--------------------------------|:---------------------------------------------------------------------------------------------------------------|:---------------------------------------------------------------|:-------------------------------------------|
-| [7t_trt](https://github.com/bids-standard/bids-examples/tree/master/7t_trt)                                 | n/a                                                                                         | anat, fmap, func                | T1map, T1w, bold, magnitude1, magnitude2, phasediff, physio, scans, sessions                                   | [link](https://bit.ly/2H0Z6Qt)                                 | n/a                                        |
-| [ds000117](https://github.com/bids-standard/bids-examples/tree/master/ds000117)                             | A multi-subject, multi-modal human neuroimaging dataset of 19 subjects on a MEG visual task | anat, beh, dwi, fmap, func, meg | FLASH, T1w, bold, channels, coordsystem, dwi, events, headshape, magnitude1, magnitude2, meg, phasediff, scans | [link](https://openneuro.org/datasets/ds000117/)               | [@RikHenson](https://github.com/RikHenson) |
-| [ds001](https://github.com/bids-standard/bids-examples/tree/master/ds001)                                   | single task, multiple runs                                                                  | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000001/versions/00006) | n/a                                        |
-| [ds002](https://github.com/bids-standard/bids-examples/tree/master/ds002)                                   | multiple tasks, multiple runs                                                               | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000002/versions/00002) | n/a                                        |
-| [ds003](https://github.com/bids-standard/bids-examples/tree/master/ds003)                                   | single task, single run                                                                     | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000003/versions/00001) | n/a                                        |
-| [ds005](https://github.com/bids-standard/bids-examples/tree/master/ds005)                                   | single task, multiple runs                                                                  | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000005/versions/00001) | n/a                                        |
-| [ds006](https://github.com/bids-standard/bids-examples/tree/master/ds006)                                   | single task, multiple sessions, multiple runs                                               | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000006/versions/00001) | n/a                                        |
-| [ds007](https://github.com/bids-standard/bids-examples/tree/master/ds007)                                   | single task, multiple runs                                                                  | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000007/versions/00001) | n/a                                        |
-| [ds008](https://github.com/bids-standard/bids-examples/tree/master/ds008)                                   | multiple tasks, multiple runs                                                               | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000008/versions/00001) | n/a                                        |
-| [ds009](https://github.com/bids-standard/bids-examples/tree/master/ds009)                                   | multiple tasks, multiple runs                                                               | anat, func                      | T1w, bold, events, inplaneT2, scans                                                                            | [link](https://openneuro.org/datasets/ds000009/versions/00002) | n/a                                        |
-| [ds011](https://github.com/bids-standard/bids-examples/tree/master/ds011)                                   | multiple tasks, multiple runs                                                               | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000011/versions/00001) | n/a                                        |
-| [ds051](https://github.com/bids-standard/bids-examples/tree/master/ds051)                                   | multiple tasks, multiple runs                                                               | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000051/versions/00001) | n/a                                        |
-| [ds052](https://github.com/bids-standard/bids-examples/tree/master/ds052)                                   | multiple tasks, multiple runs                                                               | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000052/versions/00001) | n/a                                        |
-| [ds101](https://github.com/bids-standard/bids-examples/tree/master/ds101)                                   | single task, multiple runs                                                                  | anat, func                      | T1w, bold, events                                                                                              | [link](https://openneuro.org/datasets/ds000101/versions/00004) | n/a                                        |
-| [ds102](https://github.com/bids-standard/bids-examples/tree/master/ds102)                                   | single task, multiple runs                                                                  | anat, func                      | T1w, bold, events                                                                                              | [link](https://openneuro.org/datasets/ds000102/versions/00001) | n/a                                        |
-| [ds105](https://github.com/bids-standard/bids-examples/tree/master/ds105)                                   | single task, multiple runs                                                                  | anat, func                      | T1w, bold, events                                                                                              | [link](https://openneuro.org/datasets/ds000105/versions/00001) | n/a                                        |
-| [ds107](https://github.com/bids-standard/bids-examples/tree/master/ds107)                                   | single task, multiple runs                                                                  | anat, func                      | T1w, bold, events                                                                                              | [link](https://openneuro.org/datasets/ds000107/versions/00001) | n/a                                        |
-| [ds108](https://github.com/bids-standard/bids-examples/tree/master/ds108)                                   | single task, multiple runs                                                                  | anat, func                      | T1w, bold, events                                                                                              | [link](https://openneuro.org/datasets/ds000108/versions/00002) | n/a                                        |
-| [ds109](https://github.com/bids-standard/bids-examples/tree/master/ds109)                                   | multiple tasks, multiple runs                                                               | anat, func                      | T1w, bold, events                                                                                              | [link](https://openneuro.org/datasets/ds000109/versions/00001) | n/a                                        |
-| [ds110](https://github.com/bids-standard/bids-examples/tree/master/ds110)                                   | single task, multiple runs                                                                  | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000110/versions/00001) | n/a                                        |
-| [ds113b](https://github.com/bids-standard/bids-examples/tree/master/ds113b)                                 | forrest gump watching, multiple sessions, multiple runs                                     | func                            | bold, events                                                                                                   | [link](https://openneuro.org/datasets/ds000113/versions/1.3.0) | n/a                                        |
-| [ds114](https://github.com/bids-standard/bids-examples/tree/master/ds114)                                   | multiple tasks, multiple runs                                                               | anat, dwi, func                 | T1w, bold, dwi, events                                                                                         | [link](https://openneuro.org/datasets/ds000114/versions/1.0.1) | n/a                                        |
-| [ds116](https://github.com/bids-standard/bids-examples/tree/master/ds116)                                   | multiple tasks, multiple runs                                                               | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000116/versions/00003) | n/a                                        |
-| [ds210](https://github.com/bids-standard/bids-examples/tree/master/ds210)                                   | multiple tasks, multiple runs                                                               | func                            | bold, physio                                                                                                   | [link](https://openneuro.org/datasets/ds000210/versions/00002) | n/a                                        |
-| [eeg_rest_fmri](https://github.com/bids-standard/bids-examples/tree/master/eeg_rest_fmri)                   | Resting state with simultaneous fMRI. BrainVision data format (.eeg, .vhdr, .vmrk)          | anat, dwi, eeg, func            | T1w, bold, dwi, eeg                                                                                            | n/a                                                            | [@cpernet](https://github.com/cpernet)     |
-| [eyetracking_fmri](https://github.com/bids-standard/bids-examples/tree/master/eyetracking_fmri)             | n/a                                                                                         | anat, fmap, func                | T1w, T2w, bold, epi, events, fieldmap, magnitude, physio                                                       | n/a                                                            | n/a                                        |
-| [genetics_ukbb](https://github.com/bids-standard/bids-examples/tree/master/genetics_ukbb)                   | multiple tasks, T1w, DTI, BOLD, genetic info                                                | anat, dwi, func                 | FLAIR, T1w, bold, dwi, events, info                                                                            | n/a                                                            | [@cpernet](https://github.com/cpernet)     |
-| [ieeg_visual_multimodal](https://github.com/bids-standard/bids-examples/tree/master/ieeg_visual_multimodal) | n/a                                                                                         | anat, fmap, func, ieeg          | T1w, bold, channels, coordsystem, electrodes, epi, events, ieeg, sbref                                         | n/a                                                            | [@irisgroen](https://github.com/irisgroen) |
-| [synthetic](https://github.com/bids-standard/bids-examples/tree/master/synthetic)                           | A synthetic dataset                                                                         | anat, beh, func                 | T1w, beh, bold, events, physio, scans, sessions, stim                                                          | n/a                                                            | [@effigies](https://github.com/effigies)   |
-| [volume_timing](https://github.com/bids-standard/bids-examples/tree/master/volume_timing)                   | Sparse BOLD acquisitions                                                                    | func                            | bold                                                                                                           | n/a                                                            | [@effigies](https://github.com/effigies)   |
+| name                                                                                                        | description                                                                                                                                             | datatypes                       | suffixes                                                                                                       | link to full data                                                                                   | maintained by                              |
+|:------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------------------------------------------------------------------|:--------------------------------|:---------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------|:-------------------------------------------|
+| [7t_trt](https://github.com/bids-standard/bids-examples/tree/master/7t_trt)                                 | n/a                                                                                                                                                     | anat, fmap, func                | T1map, T1w, bold, magnitude1, magnitude2, phasediff, physio, scans, sessions                                   | [link](https://bit.ly/2H0Z6Qt)                                                                      | n/a                                        |
+| [ds000117](https://github.com/bids-standard/bids-examples/tree/master/ds000117)                             | A multi-subject, multi-modal human neuroimaging dataset of 19 subjects on a MEG visual task                                                             | anat, beh, dwi, fmap, func, meg | FLASH, T1w, bold, channels, coordsystem, dwi, events, headshape, magnitude1, magnitude2, meg, phasediff, scans | [link](https://openneuro.org/datasets/ds000117/)                                                    | [@RikHenson](https://github.com/RikHenson) |
+| [ds001](https://github.com/bids-standard/bids-examples/tree/master/ds001)                                   | single task, multiple runs                                                                                                                              | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000001/versions/00006)                                      | n/a                                        |
+| [ds002](https://github.com/bids-standard/bids-examples/tree/master/ds002)                                   | multiple tasks, multiple runs                                                                                                                           | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000002/versions/00002)                                      | n/a                                        |
+| [ds003](https://github.com/bids-standard/bids-examples/tree/master/ds003)                                   | single task, single run                                                                                                                                 | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000003/versions/00001)                                      | n/a                                        |
+| [ds005](https://github.com/bids-standard/bids-examples/tree/master/ds005)                                   | single task, multiple runs                                                                                                                              | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000005/versions/00001)                                      | n/a                                        |
+| [ds006](https://github.com/bids-standard/bids-examples/tree/master/ds006)                                   | single task, multiple sessions, multiple runs                                                                                                           | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000006/versions/00001)                                      | n/a                                        |
+| [ds007](https://github.com/bids-standard/bids-examples/tree/master/ds007)                                   | single task, multiple runs                                                                                                                              | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000007/versions/00001)                                      | n/a                                        |
+| [ds008](https://github.com/bids-standard/bids-examples/tree/master/ds008)                                   | multiple tasks, multiple runs                                                                                                                           | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000008/versions/00001)                                      | n/a                                        |
+| [ds009](https://github.com/bids-standard/bids-examples/tree/master/ds009)                                   | multiple tasks, multiple runs                                                                                                                           | anat, func                      | T1w, bold, events, inplaneT2, scans                                                                            | [link](https://openneuro.org/datasets/ds000009/versions/00002)                                      | n/a                                        |
+| [ds011](https://github.com/bids-standard/bids-examples/tree/master/ds011)                                   | multiple tasks, multiple runs                                                                                                                           | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000011/versions/00001)                                      | n/a                                        |
+| [ds051](https://github.com/bids-standard/bids-examples/tree/master/ds051)                                   | multiple tasks, multiple runs                                                                                                                           | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000051/versions/00001)                                      | n/a                                        |
+| [ds052](https://github.com/bids-standard/bids-examples/tree/master/ds052)                                   | multiple tasks, multiple runs                                                                                                                           | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000052/versions/00001)                                      | n/a                                        |
+| [ds101](https://github.com/bids-standard/bids-examples/tree/master/ds101)                                   | single task, multiple runs                                                                                                                              | anat, func                      | T1w, bold, events                                                                                              | [link](https://openneuro.org/datasets/ds000101/versions/00004)                                      | n/a                                        |
+| [ds102](https://github.com/bids-standard/bids-examples/tree/master/ds102)                                   | single task, multiple runs                                                                                                                              | anat, func                      | T1w, bold, events                                                                                              | [link](https://openneuro.org/datasets/ds000102/versions/00001)                                      | n/a                                        |
+| [ds105](https://github.com/bids-standard/bids-examples/tree/master/ds105)                                   | single task, multiple runs                                                                                                                              | anat, func                      | T1w, bold, events                                                                                              | [link](https://openneuro.org/datasets/ds000105/versions/00001)                                      | n/a                                        |
+| [ds107](https://github.com/bids-standard/bids-examples/tree/master/ds107)                                   | single task, multiple runs                                                                                                                              | anat, func                      | T1w, bold, events                                                                                              | [link](https://openneuro.org/datasets/ds000107/versions/00001)                                      | n/a                                        |
+| [ds108](https://github.com/bids-standard/bids-examples/tree/master/ds108)                                   | single task, multiple runs                                                                                                                              | anat, func                      | T1w, bold, events                                                                                              | [link](https://openneuro.org/datasets/ds000108/versions/00002)                                      | n/a                                        |
+| [ds109](https://github.com/bids-standard/bids-examples/tree/master/ds109)                                   | multiple tasks, multiple runs                                                                                                                           | anat, func                      | T1w, bold, events                                                                                              | [link](https://openneuro.org/datasets/ds000109/versions/00001)                                      | n/a                                        |
+| [ds110](https://github.com/bids-standard/bids-examples/tree/master/ds110)                                   | single task, multiple runs                                                                                                                              | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000110/versions/00001)                                      | n/a                                        |
+| [ds113b](https://github.com/bids-standard/bids-examples/tree/master/ds113b)                                 | forrest gump watching, multiple sessions, multiple runs                                                                                                 | func                            | bold, events                                                                                                   | [link](https://openneuro.org/datasets/ds000113/versions/1.3.0)                                      | n/a                                        |
+| [ds114](https://github.com/bids-standard/bids-examples/tree/master/ds114)                                   | multiple tasks, multiple runs                                                                                                                           | anat, dwi, func                 | T1w, bold, dwi, events                                                                                         | [link](https://openneuro.org/datasets/ds000114/versions/1.0.1)                                      | n/a                                        |
+| [ds116](https://github.com/bids-standard/bids-examples/tree/master/ds116)                                   | multiple tasks, multiple runs                                                                                                                           | anat, func                      | T1w, bold, events, inplaneT2                                                                                   | [link](https://openneuro.org/datasets/ds000116/versions/00003)                                      | n/a                                        |
+| [ds210](https://github.com/bids-standard/bids-examples/tree/master/ds210)                                   | multiple tasks, multiple runs                                                                                                                           | func                            | bold, physio                                                                                                   | [link](https://openneuro.org/datasets/ds000210/versions/00002)                                      | n/a                                        |
+| [eeg_rest_fmri](https://github.com/bids-standard/bids-examples/tree/master/eeg_rest_fmri)                   | Resting state with simultaneous fMRI. BrainVision data format (.eeg, .vhdr, .vmrk)                                                                      | anat, dwi, eeg, func            | T1w, bold, dwi, eeg                                                                                            | n/a                                                                                                 | [@cpernet](https://github.com/cpernet)     |
+| [eyetracking_fmri](https://github.com/bids-standard/bids-examples/tree/master/eyetracking_fmri)             | n/a                                                                                                                                                     | anat, fmap, func                | T1w, T2w, bold, epi, events, fieldmap, magnitude, physio                                                       | n/a                                                                                                 | n/a                                        |
+| [genetics_ukbb](https://github.com/bids-standard/bids-examples/tree/master/genetics_ukbb)                   | multiple tasks, T1w, DTI, BOLD, genetic info                                                                                                            | anat, dwi, func                 | FLAIR, T1w, bold, dwi, events, info                                                                            | n/a                                                                                                 | [@cpernet](https://github.com/cpernet)     |
+| [ieeg_visual_multimodal](https://github.com/bids-standard/bids-examples/tree/master/ieeg_visual_multimodal) | n/a                                                                                                                                                     | anat, fmap, func, ieeg          | T1w, bold, channels, coordsystem, electrodes, epi, events, ieeg, sbref                                         | n/a                                                                                                 | [@irisgroen](https://github.com/irisgroen) |
+| [provenance_fmriprep](https://github.com/bids-standard/bids-examples/tree/master/provenance_fmriprep)       | Provenance metadata for a derivative dataset after functional MRI preprocessing performed with [`fMRIPrep`](https://fmriprep.org/en/23.1.3/index.html). | anat, func, prov                | T1w, bold, act, ent, soft, env                                                                                 | This example is based upon [ds001734](https://openneuro.org/datasets/ds001734/versions/1.0.5) data. | [@bclenet](https://github.com/bclenet)     |
+| [provenance_spm](https://github.com/bids-standard/bids-examples/tree/master/provenance_spm)                 | Provenance metadata for a derivative dataset after functional MRI preprocessing performed with [`SPM`](https://www.fil.ion.ucl.ac.uk/spm/).             | anat, func                      | T1w, bold, seg8, act, ent, soft                                                                                | This example is based upon [ds000011](cf. https://openfmri.org/dataset/ds000011/) data.             | [@bclenet](https://github.com/bclenet)     |
+| [synthetic](https://github.com/bids-standard/bids-examples/tree/master/synthetic)                           | A synthetic dataset                                                                                                                                     | anat, beh, func                 | T1w, beh, bold, events, physio, scans, sessions, stim                                                          | n/a                                                                                                 | [@effigies](https://github.com/effigies)   |
+| [volume_timing](https://github.com/bids-standard/bids-examples/tree/master/volume_timing)                   | Sparse BOLD acquisitions                                                                                                                                | func                            | bold                                                                                                           | n/a                                                                                                 | [@effigies](https://github.com/effigies)   |
 
 ### MRS
 
@@ -398,6 +400,22 @@ DO NOT EDIT DIRECTLY.
 | [eyetracking_fmri](https://github.com/bids-standard/bids-examples/tree/master/eyetracking_fmri)           | n/a                                                                   | anat, fmap, func | T1w, T2w, bold, epi, events, fieldmap, magnitude, physio                     | n/a                                                            | n/a                                                  |
 | [synthetic](https://github.com/bids-standard/bids-examples/tree/master/synthetic)                         | A synthetic dataset                                                   | anat, beh, func  | T1w, beh, bold, events, physio, scans, sessions, stim                        | n/a                                                            | [@effigies](https://github.com/effigies)             |
 
+### Provenance
+
+<!--
+TABLE BELOW IS GENERATED AUTOMATICALLY.
+DO NOT EDIT DIRECTLY.
+-->
+
+| name                                                                                                    | description                                                                                                                                             | datatypes        | suffixes                        | link to full data                                                                                   | maintained by                          |
+|:--------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------------------------------------------------------------------|:-----------------|:--------------------------------|:----------------------------------------------------------------------------------------------------|:---------------------------------------|
+| [provenance_dcm2niix](https://github.com/bids-standard/bids-examples/tree/master/provenance_dcm2niix)   | Shows minimal example of provenance metadata for a DICOM to Nifti conversion with [`dcm2niix`](https://github.com/rordenlab/dcm2niix)                   | anat             | T1w, act, ent, env, soft        | This example is based upon [hirni-demo](https://github.com/psychoinformatics-de/hirni-demo) data    | [@bclenet](https://github.com/bclenet) |
+| [provenance_fmriprep](https://github.com/bids-standard/bids-examples/tree/master/provenance_fmriprep)   | Provenance metadata for a derivative dataset after functional MRI preprocessing performed with [`fMRIPrep`](https://fmriprep.org/en/23.1.3/index.html). | anat, func, prov | T1w, bold, act, ent, soft, env  | This example is based upon [ds001734](https://openneuro.org/datasets/ds001734/versions/1.0.5) data. | [@bclenet](https://github.com/bclenet) |
+| [provenance_heudiconv](https://github.com/bids-standard/bids-examples/tree/master/provenance_heudiconv) | Shows minimal example of provenance metadata for a DICOM to Nifti conversion with [`heudiconv`](https://heudiconv.readthedocs.io/en/latest/)            | anat             | T1w, act, ent, env, soft        | This example is based upon [hirni-demo](https://github.com/psychoinformatics-de/hirni-demo) data    | [@bclenet](https://github.com/bclenet) |
+| [provenance_manual](https://github.com/bids-standard/bids-examples/tree/master/provenance_manual)       | n/a                                                                                                                                                     | n/a              | n/a                             | n/a                                                                                                 | [@bclenet](https://github.com/bclenet) |
+| [provenance_nilearn](https://github.com/bids-standard/bids-examples/tree/master/provenance_nilearn)     | Provenance metadata for the GLM Analysis of an fMRI dataset with Nilearn.                                                                               | n/a              | act, ent, env, soft             | n/a                                                                                                 | [@bclenet](https://github.com/bclenet) |
+| [provenance_spm](https://github.com/bids-standard/bids-examples/tree/master/provenance_spm)             | Provenance metadata for a derivative dataset after functional MRI preprocessing performed with [`SPM`](https://www.fil.ion.ucl.ac.uk/spm/).             | anat, func       | T1w, bold, seg8, act, ent, soft | This example is based upon [ds000011](cf. https://openfmri.org/dataset/ds000011/) data.             | [@bclenet](https://github.com/bclenet) |
+
 ### qMRI
 
 <!--
diff --git a/dataset_listing.tsv b/dataset_listing.tsv
index ef32c251c..12c4e57bd 100644
--- a/dataset_listing.tsv
+++ b/dataset_listing.tsv
@@ -107,3 +107,9 @@ atlas-DiFuMo				n/a	n/a
 eyetracking_fmri				anat, fmap, func	T1w, T2w, bold, epi, events, fieldmap, magnitude, physio
 atlas-suit				n/a	T1w
 atlas-Juelich				n/a	n/a
+provenance_dcm2niix	Shows minimal example of provenance metadata for a DICOM to Nifti conversion with [`dcm2niix`](https://github.com/rordenlab/dcm2niix)	This example is based upon [hirni-demo](https://github.com/psychoinformatics-de/hirni-demo) data	[@bclenet](https://github.com/bclenet)	anat	T1w, act, ent, env, soft
+provenance_heudiconv	Shows minimal example of provenance metadata for a DICOM to Nifti conversion with [`heudiconv`](https://heudiconv.readthedocs.io/en/latest/)	This example is based upon [hirni-demo](https://github.com/psychoinformatics-de/hirni-demo) data	[@bclenet](https://github.com/bclenet)	anat	T1w, act, ent, env, soft
+provenance_spm	Provenance metadata for a derivative dataset after functional MRI preprocessing performed with [`SPM`](https://www.fil.ion.ucl.ac.uk/spm/).	This example is based upon [ds000011](cf. https://openfmri.org/dataset/ds000011/) data.	[@bclenet](https://github.com/bclenet)	anat, func	T1w, bold, seg8, act, ent, soft
+provenance_fmriprep	Provenance metadata for a derivative dataset after functional MRI preprocessing performed with [`fMRIPrep`](https://fmriprep.org/en/23.1.3/index.html).	This example is based upon [ds001734](https://openneuro.org/datasets/ds001734/versions/1.0.5) data.	[@bclenet](https://github.com/bclenet)	anat, func, prov	T1w, bold, act, ent, soft, env
+provenance_nilearn	Provenance metadata for the GLM Analysis of an fMRI dataset with Nilearn.		[@bclenet](https://github.com/bclenet)		act, ent, env, soft
+provenance_manual			[@bclenet](https://github.com/bclenet)		
diff --git a/provenance_dcm2niix/README.md b/provenance_dcm2niix/README.md
new file mode 100644
index 000000000..38abcfede
--- /dev/null
+++ b/provenance_dcm2niix/README.md
@@ -0,0 +1,45 @@
+# Provenance of DICOM to NIfTI conversion with `dcm2niix`
+
+## Goal
+
+This example aims at showing provenance metadata for a DICOM to NIfTI conversion with [`dcm2niix`](https://github.com/rordenlab/dcm2niix
+). Provenance metadata was created manually ; its acts as a guideline for further machine-generated provenance by `dcm2niix`. 
+
+## Source data
+
+That the `sourcedata/` directory contains the source dataset (DICOM files) known as [hirni-demo](https://github.com/psychoinformatics-de/hirni-demo).
+
+## Directory tree
+
+After conversion, and adding provenance traces, the directory tree is as follows.
+
+Legend:
+* files with a ⭐ were generated by `dcm2niix`;
+* files marked with a ✍️ were generated manually;
+* files marked with a 🤖 were computed from the manually generated provenance metadata;
+* the ⭐✍️ marked `sub-02/anat/sub-02_T1w.json` file was generated by `dcm2niix`, then the `GeneratedBy` and `SidecarGeneratedBy` provenance-related fields were added manually.
+
+> [!NOTE]
+> Note that the `docs/` directory contains explanatory data (see [Provenance as a RDF graph](#provenance-as-a-rdf-graph)) that is not required to encode provenance.
+
+```
+✍️ docs/
+├── 🤖 prov-dcm2niix.jsonld
+└── 🤖 prov-dcm2niix.png
+✍️ prov/
+├── ✍️ prov-dcm2niix_act.json
+├── ✍️ prov-dcm2niix_ent.json
+├── ✍️ prov-dcm2niix_env.json
+└── ✍️ prov-dcm2niix_soft.json
+sourcedata/
+⭐ sub-02/
+└── ⭐ anat
+    ├── ⭐✍️ sub-02_T1w.json
+    └── ⭐ sub-02_T1w.nii
+```
+
+## Provenance as a RDF graph
+
+Provenance metadata can be aggregated as a JSON-LD RDF graph, which is available in [`docs/prov-dcm2niix.jsonld`](docs/prov-dcm2niix.jsonld). This is a rendered version of the graph, also available in [`docs/prov-dcm2niix.png`](docs/prov-dcm2niix.png).
+
+![Rendered version of the RDF graph](docs/prov-dcm2niix.png)
diff --git a/provenance_dcm2niix/dataset_description.json b/provenance_dcm2niix/dataset_description.json
new file mode 100644
index 000000000..e03264778
--- /dev/null
+++ b/provenance_dcm2niix/dataset_description.json
@@ -0,0 +1,14 @@
+{
+    "Name": "Provenance metadata for DICOM to NIfTI conversion with dcm2niix",
+    "BIDSVersion": "1.10.0",
+    "DatasetType": "raw",
+    "License": "CC0",
+    "Authors": [
+        "Boris Clénet"
+    ],
+    "SourceDatasets": [
+        {
+            "URL": "https://github.com/psychoinformatics-de/hirni-demo"
+        }
+    ]
+}
diff --git a/provenance_dcm2niix/docs/prov-dcm2niix.jsonld b/provenance_dcm2niix/docs/prov-dcm2niix.jsonld
new file mode 100644
index 000000000..e9fff5665
--- /dev/null
+++ b/provenance_dcm2niix/docs/prov-dcm2niix.jsonld
@@ -0,0 +1,60 @@
+{
+  "@context": "https://bids-specification--2099.org.readthedocs.build/en/2099/provenance-context.json",
+  "Records": {
+    "Software": [
+      {
+        "Id": "bids::prov#dcm2niix-khhkm7u1",
+        "Label": "dcm2niix",
+        "AlternativeIdentifier": [
+          "RRID:SCR_023517"
+        ],
+        "Version": "v1.0.20220720"
+      }
+    ],
+    "Activities": [
+      {
+        "Id": "bids::prov#conversion-00f3a18f",
+        "Label": "Conversion",
+        "Command": "dcm2niix -o . -f sub-%i/anat/sub-%i_T1w sourcedata/hirni-demo/acq1/dicoms/example-dicom-structural-master/dicoms",
+        "AssociatedWith": [
+          "bids::prov#dcm2niix-khhkm7u1"
+        ],
+        "Used": [
+          "bids::prov#fedora-uldfv058",
+          "bids::sourcedata/hirni-demo/acq1/dicoms/example-dicom-structural-master/dicoms"
+        ]
+      }
+    ],
+    "Files": [
+      {
+        "Id": "bids::sourcedata/hirni-demo/acq1/dicoms/example-dicom-structural-master/dicoms",
+        "Label": "dicoms"
+      },
+      {
+        "Id": "bids::sub-02/anat/sub-02_T1w.nii",
+        "Label": "sub-02_T1w.nii",
+        "AtLocation": "sub-02/anat/sub-02_T1w.nii",
+        "GeneratedBy": [
+          "bids::prov#conversion-00f3a18f"
+        ]
+      },
+      {
+        "Id": "bids::sub-02/anat/sub-02_T1w.json",
+        "Label": "sub-02_T1w.json",
+        "AtLocation": "sub-02/anat/sub-02_T1w.json",
+        "GeneratedBy": [
+          "bids::prov#conversion-00f3a18f"
+        ]
+      }
+    ],
+    "Datasets": [],
+    "prov:Entity": [],
+    "Environments": [
+      {
+        "Id": "bids::prov#fedora-uldfv058",
+        "Label": "Fedora release 36 (Thirty Six)",
+        "OperatingSystem": "GNU/Linux 6.2.15-100.fc36.x86_64"
+      }
+    ]
+  }
+}
\ No newline at end of file
diff --git a/provenance_dcm2niix/docs/prov-dcm2niix.png b/provenance_dcm2niix/docs/prov-dcm2niix.png
new file mode 100644
index 000000000..51a1a48cd
Binary files /dev/null and b/provenance_dcm2niix/docs/prov-dcm2niix.png differ
diff --git a/provenance_dcm2niix/prov/prov-dcm2niix_act.json b/provenance_dcm2niix/prov/prov-dcm2niix_act.json
new file mode 100644
index 000000000..92240cc12
--- /dev/null
+++ b/provenance_dcm2niix/prov/prov-dcm2niix_act.json
@@ -0,0 +1,16 @@
+{
+  "Activities": [
+    {
+      "Id": "bids::prov#conversion-00f3a18f",
+      "Label": "Conversion",
+      "Command": "dcm2niix -o . -f sub-%i/anat/sub-%i_T1w sourcedata/hirni-demo/acq1/dicoms/example-dicom-structural-master/dicoms",
+      "AssociatedWith": [
+        "bids::prov#dcm2niix-khhkm7u1"
+      ],
+      "Used": [
+        "bids::prov#fedora-uldfv058",
+        "bids::sourcedata/hirni-demo/acq1/dicoms/example-dicom-structural-master/dicoms"
+      ]
+    }
+  ]
+}
\ No newline at end of file
diff --git a/provenance_dcm2niix/prov/prov-dcm2niix_ent.json b/provenance_dcm2niix/prov/prov-dcm2niix_ent.json
new file mode 100644
index 000000000..ebfe4f710
--- /dev/null
+++ b/provenance_dcm2niix/prov/prov-dcm2niix_ent.json
@@ -0,0 +1,8 @@
+{
+  "Files": [
+    {
+      "Id": "bids::sourcedata/hirni-demo/acq1/dicoms/example-dicom-structural-master/dicoms",
+      "Label": "dicoms"
+    }
+  ]
+}
diff --git a/provenance_dcm2niix/prov/prov-dcm2niix_env.json b/provenance_dcm2niix/prov/prov-dcm2niix_env.json
new file mode 100644
index 000000000..eb877c9b9
--- /dev/null
+++ b/provenance_dcm2niix/prov/prov-dcm2niix_env.json
@@ -0,0 +1,9 @@
+{
+  "Environments": [
+    {
+      "Id": "bids::prov#fedora-uldfv058",
+      "Label": "Fedora release 36 (Thirty Six)",
+      "OperatingSystem": "GNU/Linux 6.2.15-100.fc36.x86_64"
+    }
+  ]
+}
\ No newline at end of file
diff --git a/provenance_dcm2niix/prov/prov-dcm2niix_soft.json b/provenance_dcm2niix/prov/prov-dcm2niix_soft.json
new file mode 100644
index 000000000..79ba8da74
--- /dev/null
+++ b/provenance_dcm2niix/prov/prov-dcm2niix_soft.json
@@ -0,0 +1,12 @@
+{
+  "Software": [
+    {
+      "Id": "bids::prov#dcm2niix-khhkm7u1",
+      "Label": "dcm2niix",
+      "AlternativeIdentifier": [
+        "RRID:SCR_023517"
+      ],
+      "Version": "v1.0.20220720"
+    }
+  ]
+}
\ No newline at end of file
diff --git a/provenance_dcm2niix/sub-02/anat/sub-02_T1w.json b/provenance_dcm2niix/sub-02/anat/sub-02_T1w.json
new file mode 100644
index 000000000..a325cde6e
--- /dev/null
+++ b/provenance_dcm2niix/sub-02/anat/sub-02_T1w.json
@@ -0,0 +1,29 @@
+{
+    "Modality": "MR",
+    "ManufacturersModelName": "nifti2dicom",
+    "SoftwareVersions": "0.4.11",
+    "SeriesDescription": "anat-T1w",
+    "ProtocolName": "anat-T1w",
+    "ImageType": ["DERIVED", "SECONDARY"],
+    "RawImage": false,
+    "SeriesNumber": 401,
+    "AcquisitionTime": "13:25:18.000000",
+    "AcquisitionNumber": 1,
+    "SliceThickness": 0.666667,
+    "SpacingBetweenSlices": 0.666667,
+    "ImageOrientationPatientDICOM": [
+        0.999032,
+        -0.0217884,
+        0.0382096,
+        0.0265195,
+        0.991414,
+        -0.128044   ],
+    "ConversionSoftware": "dcm2niix",
+    "ConversionSoftwareVersion": "v1.0.20220720",
+    "GeneratedBy": [
+        "bids::prov#conversion-00f3a18f"
+    ],
+    "SidecarGeneratedBy": [
+        "bids::prov#conversion-00f3a18f"
+    ]
+}
\ No newline at end of file
diff --git a/provenance_dcm2niix/sub-02/anat/sub-02_T1w.nii b/provenance_dcm2niix/sub-02/anat/sub-02_T1w.nii
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/.bidsignore b/provenance_fmriprep/.bidsignore
new file mode 100644
index 000000000..424331476
--- /dev/null
+++ b/provenance_fmriprep/.bidsignore
@@ -0,0 +1 @@
+sub-001/*
\ No newline at end of file
diff --git a/provenance_fmriprep/README.md b/provenance_fmriprep/README.md
new file mode 100644
index 000000000..2948bb4d5
--- /dev/null
+++ b/provenance_fmriprep/README.md
@@ -0,0 +1,97 @@
+# Provenance of fMRI preprocessing with `fMRIPrep`
+
+## Goal
+
+This example aims at showing provenance metadata for a preprocessing with [`fMRIPrep`](https://fmriprep.org/en/23.1.3/index.html). Provenance metadata was generated manually ; this acts as a guideline for minimal provenance description at dataset level.
+
+> [!WARNING]
+> Validation of the `sub-001/` directory is ignored through a `.bidsignore` file, as the aim of the example is to focus on provenance metadata.
+
+## Original dataset
+
+This dataset is a derivative dataset of the [ds001734](https://openneuro.org/datasets/ds001734/versions/1.0.5) dataset. ds001734 contains raw and preprocessed fMRI data of two versions of the mixed gambles task, from the Neuroimaging Analysis Replication and Prediction Study (NARPS). **Only raw data for subject `sub-001` was preprocessed for this example.** All `.nii.gz` files were replaced by empty files.
+
+## Directory tree
+
+After preprocessing, and adding provenance metadata, the directory tree is as follows.
+Files marked with ✍️ were generated manually, other files were generated by the preprocessing step.
+
+> [!NOTE]
+> Note that the `docs/` directory contains explanatory data (see [Provenance as a RDF graph](#provenance-as-a-rdf-graph)) that is not required to encode provenance.
+
+```
+.
+├── ✍️ dataset_description.json
+├── ✍️ docs
+│   ├── ✍️ prov-fmriprep.jsonld
+│   └── ✍️ prov-fmriprep.png
+├── ✍️ prov
+│   └── ✍️ prov-fmriprep
+│       ├── ✍️ prov-fmriprep_act.json
+│       ├── ✍️ prov-fmriprep_ent.json
+│       ├── ✍️ prov-fmriprep_env.json
+│       └── ✍️ prov-fmriprep_soft.json
+├── ✍️ README.md
+└── sub-001
+    ├── anat
+    │   ├── sub-001_T1w_brainmask.nii.gz
+    │   ├── sub-001_T1w_dtissue.nii.gz
+    │   ├── sub-001_T1w_label-aparcaseg_roi.nii.gz
+    │   ├── sub-001_T1w_label-aseg_roi.nii.gz
+    │   ├── sub-001_T1w_preproc.nii.gz
+    │   ├── sub-001_T1w_space-MNI152NLin2009cAsym_brainmask.nii.gz
+    │   ├── sub-001_T1w_space-MNI152NLin2009cAsym_dtissue.nii.gz
+    │   └── sub-001_T1w_space-MNI152NLin2009cAsym_preproc.nii.gz
+    └── func
+        ├── sub-001_task-MGT_run-01_bold_confounds.tsv
+        ├── sub-001_task-MGT_run-01_bold_space-MNI152NLin2009cAsym_brainmask.nii.gz
+        ├── sub-001_task-MGT_run-01_bold_space-MNI152NLin2009cAsym_preproc.nii.gz
+        ├── sub-001_task-MGT_run-01_bold_space-T1w_label-aparcaseg_roi.nii.gz
+        ├── sub-001_task-MGT_run-01_bold_space-T1w_label-aseg_roi.nii.gz
+        ├── sub-001_task-MGT_run-02_bold_confounds.tsv
+        ├── sub-001_task-MGT_run-02_bold_space-MNI152NLin2009cAsym_brainmask.nii.gz
+        ├── sub-001_task-MGT_run-02_bold_space-MNI152NLin2009cAsym_preproc.nii.gz
+        ├── sub-001_task-MGT_run-02_bold_space-T1w_label-aparcaseg_roi.nii.gz
+        ├── sub-001_task-MGT_run-02_bold_space-T1w_label-aseg_roi.nii.gz
+        ├── sub-001_task-MGT_run-03_bold_confounds.tsv
+        ├── sub-001_task-MGT_run-03_bold_space-MNI152NLin2009cAsym_brainmask.nii.gz
+        ├── sub-001_task-MGT_run-03_bold_space-MNI152NLin2009cAsym_preproc.nii.gz
+        ├── sub-001_task-MGT_run-03_bold_space-T1w_label-aparcaseg_roi.nii.gz
+        ├── sub-001_task-MGT_run-03_bold_space-T1w_label-aseg_roi.nii.gz
+        ├── sub-001_task-MGT_run-04_bold_confounds.tsv
+        ├── sub-001_task-MGT_run-04_bold_space-MNI152NLin2009cAsym_brainmask.nii.gz
+        ├── sub-001_task-MGT_run-04_bold_space-MNI152NLin2009cAsym_preproc.nii.gz
+        ├── sub-001_task-MGT_run-04_bold_space-T1w_label-aparcaseg_roi.nii.gz
+        └── sub-001_task-MGT_run-04_bold_space-T1w_label-aseg_roi.nii.gz
+
+```
+
+## Provenance as a RDF graph
+
+Provenance metadata can be aggregated as a JSON-LD RDF graph, which is available in [`docs/prov-fmriprep.jsonld`](docs/prov-fmriprep.jsonld). This is a rendered version of the graph, also available in [`docs/prov-fmriprep.png`](docs/prov-fmriprep.png).
+
+![Rendered version of the RDF graph](docs/prov-fmriprep.png)
+
+## Description of processes or pipelines
+
+Provenance can also be described by providing `GeneratedBy` with an array of objects representing pipelines or processes that generated the dataset.
+
+In this case, the `GeneratedBy` field of the `dataset_description.json` file could have contain an object representing the fMRIPrep pipeline.
+
+```JSON
+{
+    "GeneratedBy": [
+        {
+          "Name": "fMRIPrep",
+          "Version": "1.1.4",
+          "Description": "Preprocessing with fMRIPrep",
+          "CodeURL": "https://github.com/nipreps/fmriprep/releases/tag/1.1.4",
+          "Container": {
+            "Type": "docker",
+            "Tag": "poldracklab/fmriprep:1.1.4",
+            "URL": "https://hub.docker.com/layers/poldracklab/fmriprep/1.1.4"
+          }
+        }
+    ]
+}
+```
diff --git a/provenance_fmriprep/dataset_description.json b/provenance_fmriprep/dataset_description.json
new file mode 100644
index 000000000..1de0e68b4
--- /dev/null
+++ b/provenance_fmriprep/dataset_description.json
@@ -0,0 +1,21 @@
+{
+  "Name": "Outputs from fMRIPrep preprocessing of the NARPS data",
+  "BIDSVersion": "1.10.0",
+  "DatasetType": "derivative",
+  "License": "CC0",
+  "Authors": [
+    "Boris Clénet"
+  ],
+  "DatasetLinks": {
+    "ds001734": "https://openneuro.org/datasets/ds001734/versions/1.0.5"
+  },
+  "SourceDatasets": [
+    {
+      "URL": "ds001734",
+      "Version": "1.0.5"
+    }
+  ],
+  "GeneratedBy": [
+    "bids::prov#preprocessing-xMpFqB5q"
+  ]
+}
diff --git a/provenance_fmriprep/docs/prov-fmriprep.jsonld b/provenance_fmriprep/docs/prov-fmriprep.jsonld
new file mode 100644
index 000000000..adbb495e9
--- /dev/null
+++ b/provenance_fmriprep/docs/prov-fmriprep.jsonld
@@ -0,0 +1,53 @@
+{
+  "@context": "https://bids-specification--2099.org.readthedocs.build/en/2099/provenance-context.json",
+  "Records": {
+    "Software": [
+      {
+        "Id": "bids::prov#fmriprep-awf6cvk6",
+        "Label": "fMRIPrep",
+        "Version": "1.1.4",
+        "AlternativeIdentifier": [
+          "RRID:SCR_016216"
+        ]
+      }
+    ],
+    "Activities": [
+      {
+        "Id": "bids::prov#preprocessing-xMpFqB5q",
+        "Label": "Preprocessing",
+        "Command": "docker run --rm -it -v /soft/freesurfer/license.txt:/opt/freesurfer/license.txt:ro -v /dev/BEP028_BIDSprov/examples/fmriprep/ds001734:/data:ro -v /data/ds001734_fmriprep:/out -v /data/ds001734_fmriprep/work:/scratch poldracklab/fmriprep:1.1.4 /data /out participant --participant-label=001 --reports-only --write-graph -w /scratch",
+        "AssociatedWith": [
+          "bids::prov#fmriprep-awf6cvk6"
+        ],
+        "Used": [
+          "bids::prov#poldracklab/fmriprep-mHl7Dqa0",
+          "bids:ds001734"
+        ]
+      }
+    ],
+    "Files": [],
+    "Datasets": [
+      {
+        "Id": "bids:ds001734",
+        "Label": "NARPS"
+      },
+      {
+        "Id": "bids:current_dataset",
+        "Label": "Outputs from fMRIPrep preprocessing of the NARPS data",
+        "GeneratedBy": [
+          "bids::prov#preprocessing-xMpFqB5q"
+        ]
+      }
+    ],
+    "prov:Entity": [],
+    "Environments": [
+      {
+        "Id": "bids::prov#poldracklab/fmriprep-mHl7Dqa0",
+        "Label": "poldracklab/fmriprep:1.1.4",
+        "AlternativeIdentifier": [
+          "https://hub.docker.com/layers/poldracklab/fmriprep/1.1.4"
+        ]
+      }
+    ]
+  }
+}
\ No newline at end of file
diff --git a/provenance_fmriprep/docs/prov-fmriprep.png b/provenance_fmriprep/docs/prov-fmriprep.png
new file mode 100644
index 000000000..934811f63
Binary files /dev/null and b/provenance_fmriprep/docs/prov-fmriprep.png differ
diff --git a/provenance_fmriprep/prov/prov-fmriprep/prov-fmriprep_act.json b/provenance_fmriprep/prov/prov-fmriprep/prov-fmriprep_act.json
new file mode 100644
index 000000000..215d51334
--- /dev/null
+++ b/provenance_fmriprep/prov/prov-fmriprep/prov-fmriprep_act.json
@@ -0,0 +1,16 @@
+{
+  "Activities": [
+    {
+      "Id": "bids::prov#preprocessing-xMpFqB5q",
+      "Label": "Preprocessing",
+      "Command": "docker run --rm -it -v /soft/freesurfer/license.txt:/opt/freesurfer/license.txt:ro -v /dev/BEP028_BIDSprov/examples/fmriprep/ds001734:/data:ro -v /data/ds001734_fmriprep:/out -v /data/ds001734_fmriprep/work:/scratch poldracklab/fmriprep:1.1.4 /data /out participant --participant-label=001 --reports-only --write-graph -w /scratch",
+      "AssociatedWith": [
+        "bids::prov#fmriprep-awf6cvk6"
+      ],
+      "Used": [
+        "bids::prov#poldracklab/fmriprep-mHl7Dqa0",
+        "bids:ds001734:."
+      ]
+    }    
+  ]
+}
\ No newline at end of file
diff --git a/provenance_fmriprep/prov/prov-fmriprep/prov-fmriprep_ent.json b/provenance_fmriprep/prov/prov-fmriprep/prov-fmriprep_ent.json
new file mode 100644
index 000000000..8ddcc0388
--- /dev/null
+++ b/provenance_fmriprep/prov/prov-fmriprep/prov-fmriprep_ent.json
@@ -0,0 +1,8 @@
+{
+  "Datasets": [
+    {
+      "Id": "bids:ds001734:.",
+      "Label": "NARPS"
+    }
+  ]
+}
\ No newline at end of file
diff --git a/provenance_fmriprep/prov/prov-fmriprep/prov-fmriprep_env.json b/provenance_fmriprep/prov/prov-fmriprep/prov-fmriprep_env.json
new file mode 100644
index 000000000..c374bf757
--- /dev/null
+++ b/provenance_fmriprep/prov/prov-fmriprep/prov-fmriprep_env.json
@@ -0,0 +1,11 @@
+{
+  "Environments": [
+    {
+      "Id": "bids::prov#poldracklab/fmriprep-mHl7Dqa0",
+      "Label": "poldracklab/fmriprep:1.1.4",
+      "AlternativeIdentifier": [
+          "https://hub.docker.com/layers/poldracklab/fmriprep/1.1.4"
+      ]
+    }
+  ]
+}
\ No newline at end of file
diff --git a/provenance_fmriprep/prov/prov-fmriprep/prov-fmriprep_soft.json b/provenance_fmriprep/prov/prov-fmriprep/prov-fmriprep_soft.json
new file mode 100644
index 000000000..51e10dba7
--- /dev/null
+++ b/provenance_fmriprep/prov/prov-fmriprep/prov-fmriprep_soft.json
@@ -0,0 +1,12 @@
+{
+  "Software": [
+    {
+      "Id": "bids::prov#fmriprep-awf6cvk6",
+      "Label": "fMRIPrep",
+      "Version": "1.1.4",
+      "AlternativeIdentifier": [
+        "RRID:SCR_016216"
+      ]
+    } 
+  ]
+}
\ No newline at end of file
diff --git a/provenance_fmriprep/sub-001/anat/sub-001_T1w_brainmask.nii.gz b/provenance_fmriprep/sub-001/anat/sub-001_T1w_brainmask.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/anat/sub-001_T1w_dtissue.nii.gz b/provenance_fmriprep/sub-001/anat/sub-001_T1w_dtissue.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/anat/sub-001_T1w_label-aparcaseg_roi.nii.gz b/provenance_fmriprep/sub-001/anat/sub-001_T1w_label-aparcaseg_roi.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/anat/sub-001_T1w_label-aseg_roi.nii.gz b/provenance_fmriprep/sub-001/anat/sub-001_T1w_label-aseg_roi.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/anat/sub-001_T1w_preproc.nii.gz b/provenance_fmriprep/sub-001/anat/sub-001_T1w_preproc.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/anat/sub-001_T1w_space-MNI152NLin2009cAsym_brainmask.nii.gz b/provenance_fmriprep/sub-001/anat/sub-001_T1w_space-MNI152NLin2009cAsym_brainmask.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/anat/sub-001_T1w_space-MNI152NLin2009cAsym_dtissue.nii.gz b/provenance_fmriprep/sub-001/anat/sub-001_T1w_space-MNI152NLin2009cAsym_dtissue.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/anat/sub-001_T1w_space-MNI152NLin2009cAsym_preproc.nii.gz b/provenance_fmriprep/sub-001/anat/sub-001_T1w_space-MNI152NLin2009cAsym_preproc.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-01_bold_confounds.tsv b/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-01_bold_confounds.tsv
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-01_bold_space-MNI152NLin2009cAsym_brainmask.nii.gz b/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-01_bold_space-MNI152NLin2009cAsym_brainmask.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-01_bold_space-MNI152NLin2009cAsym_preproc.nii.gz b/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-01_bold_space-MNI152NLin2009cAsym_preproc.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-01_bold_space-T1w_label-aparcaseg_roi.nii.gz b/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-01_bold_space-T1w_label-aparcaseg_roi.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-01_bold_space-T1w_label-aseg_roi.nii.gz b/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-01_bold_space-T1w_label-aseg_roi.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-02_bold_confounds.tsv b/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-02_bold_confounds.tsv
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-02_bold_space-MNI152NLin2009cAsym_brainmask.nii.gz b/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-02_bold_space-MNI152NLin2009cAsym_brainmask.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-02_bold_space-MNI152NLin2009cAsym_preproc.nii.gz b/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-02_bold_space-MNI152NLin2009cAsym_preproc.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-02_bold_space-T1w_label-aparcaseg_roi.nii.gz b/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-02_bold_space-T1w_label-aparcaseg_roi.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-02_bold_space-T1w_label-aseg_roi.nii.gz b/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-02_bold_space-T1w_label-aseg_roi.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-03_bold_confounds.tsv b/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-03_bold_confounds.tsv
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-03_bold_space-MNI152NLin2009cAsym_brainmask.nii.gz b/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-03_bold_space-MNI152NLin2009cAsym_brainmask.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-03_bold_space-MNI152NLin2009cAsym_preproc.nii.gz b/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-03_bold_space-MNI152NLin2009cAsym_preproc.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-03_bold_space-T1w_label-aparcaseg_roi.nii.gz b/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-03_bold_space-T1w_label-aparcaseg_roi.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-03_bold_space-T1w_label-aseg_roi.nii.gz b/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-03_bold_space-T1w_label-aseg_roi.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-04_bold_confounds.tsv b/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-04_bold_confounds.tsv
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-04_bold_space-MNI152NLin2009cAsym_brainmask.nii.gz b/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-04_bold_space-MNI152NLin2009cAsym_brainmask.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-04_bold_space-MNI152NLin2009cAsym_preproc.nii.gz b/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-04_bold_space-MNI152NLin2009cAsym_preproc.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-04_bold_space-T1w_label-aparcaseg_roi.nii.gz b/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-04_bold_space-T1w_label-aparcaseg_roi.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-04_bold_space-T1w_label-aseg_roi.nii.gz b/provenance_fmriprep/sub-001/func/sub-001_task-MGT_run-04_bold_space-T1w_label-aseg_roi.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_heudiconv/.bidsignore b/provenance_heudiconv/.bidsignore
new file mode 100644
index 000000000..692fd97d0
--- /dev/null
+++ b/provenance_heudiconv/.bidsignore
@@ -0,0 +1 @@
+.duecredit.p
\ No newline at end of file
diff --git a/provenance_heudiconv/.heudiconv/02/ses-acq1/info/02_ses-acq1.auto.txt b/provenance_heudiconv/.heudiconv/02/ses-acq1/info/02_ses-acq1.auto.txt
new file mode 100644
index 000000000..72bd4f08f
--- /dev/null
+++ b/provenance_heudiconv/.heudiconv/02/ses-acq1/info/02_ses-acq1.auto.txt
@@ -0,0 +1 @@
+{('sub-001/anat/sub-001_run-1_T1w', ('nii.gz',), None): ['401-anat-T1w']}
\ No newline at end of file
diff --git a/provenance_heudiconv/.heudiconv/02/ses-acq1/info/02_ses-acq1.edit.txt b/provenance_heudiconv/.heudiconv/02/ses-acq1/info/02_ses-acq1.edit.txt
new file mode 100644
index 000000000..72bd4f08f
--- /dev/null
+++ b/provenance_heudiconv/.heudiconv/02/ses-acq1/info/02_ses-acq1.edit.txt
@@ -0,0 +1 @@
+{('sub-001/anat/sub-001_run-1_T1w', ('nii.gz',), None): ['401-anat-T1w']}
\ No newline at end of file
diff --git a/provenance_heudiconv/.heudiconv/02/ses-acq1/info/heuristic.py b/provenance_heudiconv/.heudiconv/02/ses-acq1/info/heuristic.py
new file mode 100644
index 000000000..82750c96f
--- /dev/null
+++ b/provenance_heudiconv/.heudiconv/02/ses-acq1/info/heuristic.py
@@ -0,0 +1,355 @@
+import logging
+import lzma
+from simplejson import loads as json_loads
+from os import environ
+
+lgr = logging.getLogger(__name__)
+
+
+# map the various guesses to the cannonical labels
+modality_label_map = {
+    't1': 'T1w',
+    't1w': 'T1w',
+    't2': 'T2w',
+    't2w': 'T2w',
+    't1rho': 'T1rho',
+    't1map': 'T1map',
+    't2map': 'T2map',
+    't2star': 'T2star',
+    'flair': 'FLAIR',
+    'flash': 'FLASH',
+    'pd': 'PD',
+    'pdmap': 'PDmap',
+    'pdt2': 'PDT2',
+    'inplanet1': 'inplaneT1',
+    'inplanet2': 'inplaneT2',
+}
+
+# map the cannonical modality labels to data_type labels
+datatype_labels_map = {
+    'bold': 'func',
+    'sbref': 'func',
+
+    'T1w': 'anat',
+    'T2w': 'anat',
+    'T1rho': 'anat',
+    'T1map': 'anat',
+    'T2map': 'anat',
+    'T2star': 'anat',
+    'FLAIR': 'anat',
+    'FLASH': 'anat',
+    'PD': 'anat',
+    'PDmap': 'anat',
+    'PDT2': 'anat',
+    'inplaneT1': 'anat',
+    'inplaneT2': 'anat',
+    'angio': 'anat',
+
+    'swi': 'swi',
+    'dwi': 'dwi',
+
+    'phasediff': 'fmap',
+    'phase1': 'fmap',
+    'phase2': 'fmap',
+    'magnitude1': 'fmap',
+    'magnitude2': 'fmap',
+    'fieldmap': 'fmap',
+
+    'epi': 'fmap',  # TODO?
+}
+
+# map specification keys to BIDS abbreviation used in paths
+spec2bids_map = {
+    'subject': "sub",
+    'anon-subject': "sub",
+    'bids-session': "ses",
+    'bids-task': "task",
+    'bids-run': "run",
+    'bids-modality': "mod",
+    'bids-acquisition': "acq",
+    'bids-scan': "scan",
+    'bids-contrast-enhancement': "ce",
+    'bids-reconstruction-algorithm': "rec",
+    'bids-echo': "echo",
+    'bids-direction': "dir",
+
+    # SWI Extension:
+    'bids-part': "part",
+    'bids-coil': "coil",
+
+}
+
+
+def get_specval(spec, key):
+    return spec[key]['value']
+
+
+def has_specval(spec, key):
+    return key in spec and 'value' in spec[key] and spec[key]['value']
+
+
+# Snippet from https://github.com/datalad/datalad to avoid depending on it for
+# just one function:
+def LZMAFile(*args, **kwargs):
+    """A little decorator to overcome a bug in lzma
+
+    A unique to yoh and some others bug with pyliblzma
+    calling dir() helps to avoid AttributeError __exit__
+    see https://bugs.launchpad.net/pyliblzma/+bug/1219296
+    """
+    lzmafile = lzma.LZMAFile(*args, **kwargs)
+    dir(lzmafile)
+    return lzmafile
+
+
+def loads(s, *args, **kwargs):
+    """Helper to log actual value which failed to be parsed"""
+    try:
+        return json_loads(s, *args, **kwargs)
+    except:
+        lgr.error(
+            "Failed to load content from %r with args=%r kwargs=%r"
+            % (s, args, kwargs)
+        )
+        raise
+
+
+def load_stream(fname, compressed=False):
+
+    _open = LZMAFile if compressed else open
+    with _open(fname, mode='r') as f:
+        for line in f:
+            yield loads(line)
+
+# END datalad Snippet
+
+
+def create_key(template, outtype=('nii.gz',), annotation_classes=None):
+    if template is None or not template:
+        raise ValueError('Template must be a valid format string')
+
+    return template, outtype, annotation_classes
+
+
+class SpecLoader(object):
+    """
+    Persistent object to hold the study specification and not read the JSON on
+    each invocation of `infotodict`. Module level attribute for the spec itself
+    doesn't work, since the env variable isn't necessarily available at first
+    import.
+    """
+
+    def __init__(self):
+        self._spec = None
+        # get chosen subject id (orig or anon) from env var
+        self.subject = environ.get('HIRNI_SPEC2BIDS_SUBJECT')
+
+    def get_study_spec(self):
+        if self._spec is None:
+            filename = environ.get('HIRNI_STUDY_SPEC')
+            if filename:
+                self._spec = [d for d in load_stream(filename)
+                              if d['type'] == 'dicomseries']
+            else:
+                # TODO: Just raise or try a default location first?
+                raise ValueError("No study specification provided. "
+                                 "Set environment variable HIRNI_STUDY_SPEC "
+                                 "to do so.")
+        return self._spec
+
+
+_spec = SpecLoader()
+
+
+def validate_spec(spec):
+
+    if not spec:
+        raise ValueError("Image series specification is empty.")
+
+    tags = spec.get('tags', None)
+    if tags and 'hirni-dicom-converter-ignore' in tags:
+        lgr.debug("Skip series %s (marked 'ignore' in spec)", spec['uid'])
+        return False
+
+    # mandatory keys for any spec dict (not only dicomseries)
+    for k in spec.keys():
+        # automatically managed keys with no subdict:
+        # TODO: Where to define this list?
+        # TODO: Test whether those are actually present!
+        if k in ['type', 'location', 'uid', 'dataset-id',
+                 'dataset-refcommit', 'procedures', 'tags']:
+            continue
+        if 'value' not in spec[k]:
+            lgr.warning("DICOM series specification (UID: {uid}) has no value "
+                        "for key '{key}'.".format(uid=spec['uid'], key=k))
+            return False
+
+    if spec['type'] != 'dicomseries':
+        lgr.warning("Specification not of type 'dicomseries'.")
+        return False
+
+    if 'uid' not in spec.keys() or not spec['uid']:
+        lgr.warning("Missing image series UID.")
+        return False
+
+    for var in ('bids-modality',):
+        if not has_specval(spec, var):
+            lgr.warning("Missing specification value for key '%s'", var)
+            return False
+
+    return True
+
+
+# TODO: can be removed, whenever nipy/heudiconv #197 is solved
+def infotoids(seqinfos, outdir):
+    return {'locator': None,
+            'session': None,
+            'subject': None}
+
+
+def infotodict(seqinfo):  # pragma: no cover
+    """Heuristic evaluator for determining which runs belong where
+
+    allowed template fields - follow python string module:
+
+    item: index within category
+    subject: participant id
+    seqitem: run number during scanning
+    subindex: sub index within group
+    """
+
+    info = dict()
+    for idx, s in enumerate(seqinfo):
+
+        # find in spec:
+        candidates = [series for series in _spec.get_study_spec()
+                      if str(s.series_uid) == series['uid']]
+        if not candidates:
+            raise ValueError("Found no match for seqinfo: %s" % str(s))
+        if len(candidates) != 1:
+            raise ValueError("Found %s match(es) for series UID %s" %
+                             (len(candidates), s.uid))
+        series_spec = candidates[0]
+
+        if not validate_spec(series_spec):
+            lgr.debug("Series invalid (%s). Skip.", str(s.series_uid))
+            continue
+
+        dirname = filename = "sub-{}".format(_spec.subject)
+        # session
+        if has_specval(series_spec, 'bids-session'):
+            ses = get_specval(series_spec, 'bids-session')
+            dirname += "/ses-{}".format(ses)
+            filename += "_ses-{}".format(ses)
+
+        # data type
+        modality = get_specval(series_spec, 'bids-modality')
+        # make cannonical if possible
+        modality = modality_label_map.get(modality, modality)
+        # apply fixed mapping from modality -> data_type
+        data_type = datatype_labels_map[modality]
+
+        dirname += "/{}".format(data_type)
+
+        # TODO: Once special cases (like when to use '_mod-' prefix for modality
+        # are clear, integrate data type selection with spec_key list and
+        # thereby reduce code duplication further
+
+        if data_type == 'func':
+            # func/sub-<participant_label>[_ses-<session_label>]
+            # _task-<task_label>[_acq-<label>][_rec-<label>][_run-<index>][_echo-<index>]_<modality_label>.nii[.gz]
+
+            for spec_key in ['bids-task', 'bids-acquisition',
+                             'bids-reconstruction_algorithm', 'bids-run',
+                             'bids-echo']:
+                if has_specval(series_spec, spec_key):
+                    filename += "_{}-{}".format(
+                            spec2bids_map[spec_key],
+                            get_specval(series_spec, spec_key))
+
+            filename += "_{}".format(modality)
+
+        if data_type == 'anat':
+            # anat/sub-<participant_label>[_ses-<session_label>]
+            # [_acq-<label>][_ce-<label>][_rec-<label>][_run-<index>][_mod-<label>]_<modality_label>.nii[.gz]
+
+            for spec_key in ['bids-acquisition',
+                             'bids-contrast_enhancement',
+                             'bids-reconstruction_algorithm',
+                             'bids-run']:
+                if has_specval(series_spec, spec_key):
+                    filename += "_{}-{}".format(
+                            spec2bids_map[spec_key],
+                            get_specval(series_spec, spec_key))
+
+            # TODO: [_mod-<label>]  (modality if defaced, right?)
+            #       => simple bool 'defaced' in spec or is there more to it?
+
+            filename += "_{}".format(modality)
+
+        if data_type == 'dwi':
+            # dwi/sub-<participant_label>[_ses-<session_label>]
+            # [_acq-<label>][_run-<index>]_dwi.nii[.gz]
+
+            for spec_key in ['bids-acquisition',
+                             'bids-run']:
+                if has_specval(series_spec, spec_key):
+                    filename += "_{}-{}".format(
+                            spec2bids_map[spec_key],
+                            get_specval(series_spec, spec_key))
+
+            # TODO: Double check: Is this always correct?
+            filename += "_dwi"
+
+        if data_type == 'swi':
+            # BIDS-Extension:
+            # https://docs.google.com/document/d/1kyw9mGgacNqeMbp4xZet3RnDhcMmf4_BmRgKaOkO2Sc
+            # swi/sub-<participant_label>[_ses-<session_label>]
+            #       [_acq-<label>][_rec-<label>]_part-<phase|mag>[_coil-<index>][_echo-<index>][_run-<index>]_GRE.nii[.gz]
+
+            for spec_key in ['bids-acquisition',
+                             'bids-reconstruction_algorithm',
+                             'bids-part',
+                             'bids-coil',
+                             'bids-echo',
+                             'bids-run',
+                             ]:
+                if has_specval(series_spec, spec_key):
+                    filename += "_{}-{}".format(
+                            spec2bids_map[spec_key],
+                            get_specval(series_spec, spec_key))
+
+            filename += "_GRE"
+
+        if data_type == 'fmap':
+            # Case 1: Phase difference image and at least one magnitude image
+            # sub-<participant_label>/[ses-<session_label>/]
+            # [_acq-<label>][_dir-<dir_label>][_run-<run_index>]_<modality_label>.nii[.gz]
+
+            # Note/TODO: fmap modalities:
+            # _phasediff
+            # _magnitude1
+            # _magnitude2
+            # _phase1
+            # _phase2
+            # _magnitude
+            # _fieldmap
+            # _epi
+
+            for spec_key in ['bids-acquisition',
+                             'bids-direction',
+                             'bids-run']:
+                if has_specval(series_spec, spec_key):
+                    filename += "_{}-{}".format(
+                            spec2bids_map[spec_key],
+                            get_specval(series_spec, spec_key))
+
+            filename += "_{}".format(modality)
+
+        key = create_key(dirname + '/' + filename)
+        if key not in info:
+            info[key] = []
+
+        info[key].append(s[2])
+
+    return info
diff --git a/provenance_heudiconv/CHANGES b/provenance_heudiconv/CHANGES
new file mode 100644
index 000000000..061247385
--- /dev/null
+++ b/provenance_heudiconv/CHANGES
@@ -0,0 +1,5 @@
+0.0.1  Initial data acquired
+TODOs:
+	- verify and possibly extend information in participants.tsv (see for example http://datasets.datalad.org/?dir=/openfmri/ds000208)
+	- fill out dataset_description.json, README, sourcedata/README (if present)
+	- provide _events.tsv file for each _bold.nii.gz with onsets of events (see  '8.5 Task events'  of BIDS specification)
\ No newline at end of file
diff --git a/provenance_heudiconv/README b/provenance_heudiconv/README
new file mode 100644
index 000000000..03521de26
--- /dev/null
+++ b/provenance_heudiconv/README
@@ -0,0 +1,57 @@
+# Provenance of DICOM to NIfTI conversion with `heudiconv`
+
+## Goal
+
+This example aims at showing provenance metadata for a DICOM to NIfTI conversion, performed by [`heudiconv`](https://heudiconv.readthedocs.io/en/latest/). Provenance metadata was created manually ; it acts as a guideline for further machine-generated provenance by `heudiconv`. 
+
+## Source data
+
+That the `sourcedata/` directory contains the source dataset (DICOM files) known as [hirni-demo](https://github.com/psychoinformatics-de/hirni-demo).
+
+## Directory tree
+
+After conversion, and adding provenance traces, the directory tree is as follows.
+
+Legend:
+* files with a ⭐ were generated by `heudiconv`;
+* files with a ✍️ were generated manually;
+* files with a 🤖 were computed from the manually generated provenance metadata;
+* files with ⭐✍️ were generated by `heudiconv` and then edited by hand.
+
+> [!NOTE]
+> Note that the `docs/` directory contains explanatory data (see [Provenance as a RDF graph](#provenance-as-a-rdf-graph)) that is not required to encode provenance.
+
+```
+.
+├── ⭐ .bidsignore
+├── ⭐ CHANGES
+├── ⭐✍️ dataset_description.json
+├── ⭐ .heudiconv/
+├── ⭐ participants.json
+├── ⭐ participants.tsv
+├── ✍️ docs/
+│   ├── 🤖 prov-heudiconv.jsonld
+│   └── 🤖 prov-heudiconv.png
+├── ✍️ prov/
+│   ├── ✍️ prov-heudiconv_act.json
+│   ├── ✍️ prov-heudiconv_ent.json
+│   ├── ✍️ prov-heudiconv_env.json
+│   └── ✍️ prov-heudiconv_soft.json
+├── ⭐✍️ README
+├── ⭐ scans.json
+├── sourcedata/
+│   ├── hirni-demo
+│   │   └── ...
+│   └── ⭐ README
+└── ⭐ sub-001/
+    ├── ⭐ anat
+    │   ├── ⭐ sub-001_run-1_T1w.json
+    │   └── ⭐ sub-001_run-1_T1w.nii.gz
+    └── ⭐ sub-001_scans.tsv
+```
+
+## Provenance as a RDF graph
+
+Provenance metadata can be aggregated as a JSON-LD RDF graph, which is available in [`docs/prov-heudiconv.jsonld`](docs/prov-heudiconv.jsonld). This is a rendered version of the graph, also available in [`docs/prov-heudiconv.png`](docs/prov-heudiconv.png).
+
+![Rendered version of the RDF graph](docs/prov-heudiconv.png)
diff --git a/provenance_heudiconv/dataset_description.json b/provenance_heudiconv/dataset_description.json
new file mode 100644
index 000000000..5261d3cf5
--- /dev/null
+++ b/provenance_heudiconv/dataset_description.json
@@ -0,0 +1,25 @@
+{
+  "Acknowledgements": "TODO: whom you want to acknowledge",
+  "Authors": [
+    "Boris Clénet"
+  ],
+  "BIDSVersion": "1.8.0",
+  "DatasetDOI": "TODO: eventually a DOI for the dataset",
+  "Funding": [
+    "TODO",
+    "GRANT #1",
+    "GRANT #2"
+  ],
+  "HowToAcknowledge": "TODO: describe how to acknowledge -- either cite a corresponding paper, or just in acknowledgement section",
+  "License": "TODO: choose a license, e.g. PDDL (http://opendatacommons.org/licenses/pddl/)",
+  "Name": "Provenance metadata for DICOM to NIfTI conversion with heudiconv",
+  "ReferencesAndLinks": [
+    "TODO",
+    "List of papers or websites"
+  ],
+  "SourceDatasets": [
+    {
+      "URL": "https://github.com/psychoinformatics-de/hirni-demo"
+    }
+  ]
+}
\ No newline at end of file
diff --git a/provenance_heudiconv/docs/prov-heudiconv.jsonld b/provenance_heudiconv/docs/prov-heudiconv.jsonld
new file mode 100644
index 000000000..f05227eea
--- /dev/null
+++ b/provenance_heudiconv/docs/prov-heudiconv.jsonld
@@ -0,0 +1,148 @@
+{
+  "@context": "https://bids-specification--2099.org.readthedocs.build/en/2099/provenance-context.json",
+  "Records": {
+    "Software": [
+      {
+        "Id": "bids::prov#heudiconv-a9x5yd3j",
+        "Label": "heudiconv",
+        "Version": "v1.3.2"
+      },
+      {
+        "Id": "bids::prov#dcm2niix-r4a7zxc0",
+        "Label": "dcm2niix",
+        "Version": "v1.3.2",
+        "ActedOnBehalfOf": [
+          "bids::prov#heudiconv-a9x5yd3j"
+        ]
+      }
+    ],
+    "Activities": [
+      {
+        "Id": "bids::prov#preparation-conversion-1xkhm1ft",
+        "Label": "Preparation to conversion",
+        "Command": "heudiconv --files sourcedata/hirni-demo/acq1/dicoms/example-dicom-structural-master/dicoms/*.dcm -o . -f sourcedata/hirni-demo/code/hirni-toolbox/converters/heudiconv/hirni_heuristic.py -s 001 -ss acq1 -c dcm2niix -b --minmeta --overwrite",
+        "AssociatedWith": [
+          "bids::prov#heudiconv-a9x5yd3j"
+        ],
+        "Used": [
+          "bids::prov#fedora-1cu6r6ou",
+          "bids::sourcedata/hirni-demo/acq1/studyspec.json",
+          "bids::sourcedata/hirni-demo/acq1/dicoms/example-dicom-structural-master/dicoms",
+          "bids::sourcedata/hirni-demo/code/hirni-toolbox/converters/heudiconv/hirni_heuristic.py"
+        ]
+      },
+      {
+        "Id": "bids::prov#conversion-00f3a18f",
+        "Label": "Conversion",
+        "Command": "dcm2niix",
+        "AssociatedWith": [
+          "bids::prov#dcm2niix-r4a7zxc0"
+        ],
+        "Used": [
+          "bids::prov#fedora-1cu6r6ou",
+          "bids::sourcedata/hirni-demo/acq1/dicoms/example-dicom-structural-master/dicoms"
+        ]
+      }
+    ],
+    "Files": [
+      {
+        "Id": "bids::sourcedata/hirni-demo/code/hirni-toolbox/converters/heudiconv/hirni_heuristic.py",
+        "Label": "heuristic"
+      },
+      {
+        "Id": "bids::sourcedata/hirni-demo/acq1/studyspec.json",
+        "Label": "studyspec"
+      },
+      {
+        "Id": "bids::sourcedata/hirni-demo/acq1/dicoms/example-dicom-structural-master/dicoms",
+        "Label": "dicoms"
+      },
+      {
+        "Id": "bids::.bidsignore",
+        "Label": ".bidsignore",
+        "GeneratedBy": [
+          "bids::prov#preparation-conversion-1xkhm1ft"
+        ]
+      },
+      {
+        "Id": "bids::.heudiconv/",
+        "Label": ".heudiconv/",
+        "GeneratedBy": [
+          "bids::prov#preparation-conversion-1xkhm1ft"
+        ]
+      },
+      {
+        "Id": "bids::CHANGES",
+        "Label": "CHANGES",
+        "GeneratedBy": [
+          "bids::prov#preparation-conversion-1xkhm1ft"
+        ]
+      },
+      {
+        "Id": "bids::dataset_description.json",
+        "Label": "dataset_description.json",
+        "GeneratedBy": [
+          "bids::prov#preparation-conversion-1xkhm1ft"
+        ]
+      },
+      {
+        "Id": "bids::participants.json",
+        "Label": "participants.json",
+        "GeneratedBy": [
+          "bids::prov#preparation-conversion-1xkhm1ft"
+        ]
+      },
+      {
+        "Id": "bids::participants.tsv",
+        "Label": "participants.tsv",
+        "GeneratedBy": [
+          "bids::prov#preparation-conversion-1xkhm1ft"
+        ]
+      },
+      {
+        "Id": "bids::README",
+        "Label": "README",
+        "GeneratedBy": [
+          "bids::prov#preparation-conversion-1xkhm1ft"
+        ]
+      },
+      {
+        "Id": "bids::scans.json",
+        "Label": "scans.json",
+        "GeneratedBy": [
+          "bids::prov#preparation-conversion-1xkhm1ft"
+        ]
+      },
+      {
+        "Id": "bids::sub-001/anat/sub-001_run-1_T1w.nii.gz",
+        "Label": "sub-001_run-1_T1w.nii.gz",
+        "AtLocation": "sub-001/anat/sub-001_run-1_T1w.nii.gz",
+        "GeneratedBy": [
+          "bids::prov#conversion-00f3a18f"
+        ]
+      },
+      {
+        "Id": "bids::sub-001/anat/sub-001_run-1_T1w.json",
+        "Label": "sub-001_run-1_T1w.json",
+        "AtLocation": "sub-001/anat/sub-001_run-1_T1w.json",
+        "GeneratedBy": [
+          "bids::prov#preparation-conversion-1xkhm1ft",
+          "bids::prov#conversion-00f3a18f"
+        ]
+      }
+    ],
+    "Datasets": [],
+    "prov:Entity": [],
+    "Environments": [
+      {
+        "Id": "bids::prov#fedora-1cu6r6ou",
+        "Label": "Fedora release 36 (Thirty Six)",
+        "OperatingSystem": "GNU/Linux 6.2.15-100.fc36.x86_64",
+        "EnvironmentVariables": {
+          "HIRNI_STUDY_SPEC": "sourcedata/hirni-demo/acq1/studyspec.json",
+          "HIRNI_SPEC2BIDS_SUBJECT": "001"
+        }
+      }
+    ]
+  }
+}
\ No newline at end of file
diff --git a/provenance_heudiconv/docs/prov-heudiconv.png b/provenance_heudiconv/docs/prov-heudiconv.png
new file mode 100644
index 000000000..c2baec598
Binary files /dev/null and b/provenance_heudiconv/docs/prov-heudiconv.png differ
diff --git a/provenance_heudiconv/participants.json b/provenance_heudiconv/participants.json
new file mode 100644
index 000000000..0d9e3ad57
--- /dev/null
+++ b/provenance_heudiconv/participants.json
@@ -0,0 +1,14 @@
+{
+  "participant_id": {
+    "Description": "Participant identifier"
+  },
+  "age": {
+    "Description": "Age in years (TODO - verify) as in the initial session, might not be correct for other sessions"
+  },
+  "sex": {
+    "Description": "self-rated by participant, M for male/F for female (TODO: verify)"
+  },
+  "group": {
+    "Description": "(TODO: adjust - by default everyone is in control group)"
+  }
+}
\ No newline at end of file
diff --git a/provenance_heudiconv/participants.tsv b/provenance_heudiconv/participants.tsv
new file mode 100644
index 000000000..2b8a2cfe9
--- /dev/null
+++ b/provenance_heudiconv/participants.tsv
@@ -0,0 +1,2 @@
+participant_id	age	sex	group
+sub-001	42	F	control
diff --git a/provenance_heudiconv/prov/prov-heudiconv_act.json b/provenance_heudiconv/prov/prov-heudiconv_act.json
new file mode 100644
index 000000000..9f98d324d
--- /dev/null
+++ b/provenance_heudiconv/prov/prov-heudiconv_act.json
@@ -0,0 +1,30 @@
+{
+  "Activities": [
+    {
+      "Id": "bids::prov#preparation-conversion-1xkhm1ft",
+      "Label": "Preparation to conversion",
+      "Command": "heudiconv --files sourcedata/hirni-demo/acq1/dicoms/example-dicom-structural-master/dicoms/*.dcm -o . -f sourcedata/hirni-demo/code/hirni-toolbox/converters/heudiconv/hirni_heuristic.py -s 001 -ss acq1 -c dcm2niix -b --minmeta --overwrite",
+      "AssociatedWith": [
+        "bids::prov#heudiconv-a9x5yd3j"
+      ],
+      "Used": [
+        "bids::prov#fedora-1cu6r6ou",
+        "bids::sourcedata/hirni-demo/acq1/studyspec.json",
+        "bids::sourcedata/hirni-demo/acq1/dicoms/example-dicom-structural-master/dicoms",
+        "bids::sourcedata/hirni-demo/code/hirni-toolbox/converters/heudiconv/hirni_heuristic.py"
+      ]
+    },
+    {
+      "Id": "bids::prov#conversion-00f3a18f",
+      "Label": "Conversion",
+      "Command": "dcm2niix",
+      "AssociatedWith": [
+        "bids::prov#dcm2niix-r4a7zxc0"
+      ],
+      "Used": [
+        "bids::prov#fedora-1cu6r6ou",
+        "bids::sourcedata/hirni-demo/acq1/dicoms/example-dicom-structural-master/dicoms"
+      ]
+    }
+  ]
+}
diff --git a/provenance_heudiconv/prov/prov-heudiconv_ent.json b/provenance_heudiconv/prov/prov-heudiconv_ent.json
new file mode 100644
index 000000000..324bb66ea
--- /dev/null
+++ b/provenance_heudiconv/prov/prov-heudiconv_ent.json
@@ -0,0 +1,72 @@
+{
+  "Files": [
+    {
+      "Id": "bids::sourcedata/hirni-demo/code/hirni-toolbox/converters/heudiconv/hirni_heuristic.py",
+      "Label": "heuristic"
+    },
+    {
+      "Id": "bids::sourcedata/hirni-demo/acq1/studyspec.json",
+      "Label": "studyspec"
+    },
+    {
+      "Id": "bids::sourcedata/hirni-demo/acq1/dicoms/example-dicom-structural-master/dicoms",
+      "Label": "dicoms"
+    },
+    {
+      "Id": "bids::.bidsignore",
+      "Label": ".bidsignore",
+      "GeneratedBy": [
+        "bids::prov#preparation-conversion-1xkhm1ft"
+      ]
+    },
+    {
+      "Id": "bids::.heudiconv/",
+      "Label": ".heudiconv/",
+      "GeneratedBy": [
+        "bids::prov#preparation-conversion-1xkhm1ft"
+      ]
+    },
+    {
+      "Id": "bids::CHANGES",
+      "Label": "CHANGES",
+      "GeneratedBy": [
+        "bids::prov#preparation-conversion-1xkhm1ft"
+      ]
+    },
+    {
+      "Id": "bids::dataset_description.json",
+      "Label": "dataset_description.json",
+      "GeneratedBy": [
+        "bids::prov#preparation-conversion-1xkhm1ft"
+      ]
+    },
+    {
+      "Id": "bids::participants.json",
+      "Label": "participants.json",
+      "GeneratedBy": [
+        "bids::prov#preparation-conversion-1xkhm1ft"
+      ]
+    },
+    {
+      "Id": "bids::participants.tsv",
+      "Label": "participants.tsv",
+      "GeneratedBy": [
+        "bids::prov#preparation-conversion-1xkhm1ft"
+      ]
+    },
+    {
+      "Id": "bids::README",
+      "Label": "README",
+      "GeneratedBy": [
+        "bids::prov#preparation-conversion-1xkhm1ft"
+      ]
+    },
+    {
+      "Id": "bids::scans.json",
+      "Label": "scans.json",
+      "GeneratedBy": [
+        "bids::prov#preparation-conversion-1xkhm1ft"
+      ]
+    }
+  ]
+}
diff --git a/provenance_heudiconv/prov/prov-heudiconv_env.json b/provenance_heudiconv/prov/prov-heudiconv_env.json
new file mode 100644
index 000000000..d2ec49de0
--- /dev/null
+++ b/provenance_heudiconv/prov/prov-heudiconv_env.json
@@ -0,0 +1,13 @@
+{
+  "Environments": [
+    {
+      "Id": "bids::prov#fedora-1cu6r6ou",
+      "Label": "Fedora release 36 (Thirty Six)",
+      "OperatingSystem": "GNU/Linux 6.2.15-100.fc36.x86_64",
+      "EnvironmentVariables": {
+        "HIRNI_STUDY_SPEC": "sourcedata/hirni-demo/acq1/studyspec.json",
+        "HIRNI_SPEC2BIDS_SUBJECT": "001"
+      }
+    }
+  ]
+}
diff --git a/provenance_heudiconv/prov/prov-heudiconv_soft.json b/provenance_heudiconv/prov/prov-heudiconv_soft.json
new file mode 100644
index 000000000..09b987757
--- /dev/null
+++ b/provenance_heudiconv/prov/prov-heudiconv_soft.json
@@ -0,0 +1,17 @@
+{
+  "Software": [
+    {
+      "Id": "bids::prov#heudiconv-a9x5yd3j",
+      "Label": "heudiconv",
+      "Version": "v1.3.2"
+    },
+    {
+      "Id": "bids::prov#dcm2niix-r4a7zxc0",
+      "Label": "dcm2niix",
+      "Version": "v1.3.2",
+      "ActedOnBehalfOf": [
+        "bids::prov#heudiconv-a9x5yd3j"
+      ]
+    }
+  ]
+}
diff --git a/provenance_heudiconv/scans.json b/provenance_heudiconv/scans.json
new file mode 100644
index 000000000..8733b9e8c
--- /dev/null
+++ b/provenance_heudiconv/scans.json
@@ -0,0 +1,16 @@
+{
+  "filename": {
+    "Description": "Name of the nifti file"
+  },
+  "acq_time": {
+    "LongName": "Acquisition time",
+    "Description": "Acquisition time of the particular scan"
+  },
+  "operator": {
+    "Description": "Name of the operator"
+  },
+  "randstr": {
+    "LongName": "Random string",
+    "Description": "md5 hash of UIDs"
+  }
+}
\ No newline at end of file
diff --git a/provenance_heudiconv/sourcedata/README b/provenance_heudiconv/sourcedata/README
new file mode 100644
index 000000000..699eb76c8
--- /dev/null
+++ b/provenance_heudiconv/sourcedata/README
@@ -0,0 +1,2 @@
+TODO: Provide description about source data, e.g. 
+Directory below contains DICOMS compressed into tarballs per each sequence, replicating directory hierarchy of the BIDS dataset itself.
\ No newline at end of file
diff --git a/provenance_heudiconv/sub-001/anat/sub-001_run-1_T1w.json b/provenance_heudiconv/sub-001/anat/sub-001_run-1_T1w.json
new file mode 100644
index 000000000..2694c9df1
--- /dev/null
+++ b/provenance_heudiconv/sub-001/anat/sub-001_run-1_T1w.json
@@ -0,0 +1,28 @@
+{
+  "AcquisitionNumber": 1,
+  "AcquisitionTime": "13:25:18.000000",
+  "ConversionSoftware": "dcm2niix",
+  "ConversionSoftwareVersion": "v1.0.20220720",
+  "HeudiconvVersion": "1.3.2",
+  "ImageOrientationPatientDICOM": [0.999032, -0.0217884, 0.0382096, 0.0265195, 0.991414, -0.128044],
+  "ImageType": [
+    "DERIVED",
+    "SECONDARY"
+],
+  "ManufacturersModelName": "nifti2dicom",
+  "Modality": "MR",
+  "ProtocolName": "anat-T1w",
+  "RawImage": false,
+  "SeriesDescription": "anat-T1w",
+  "SeriesNumber": 401,
+  "SliceThickness": 0.666667,
+  "SoftwareVersions": "0.4.11",
+  "SpacingBetweenSlices": 0.666667,
+  "GeneratedBy": [
+    "bids::prov#conversion-00f3a18f"
+  ],
+  "SidecarGeneratedBy": [
+    "bids::prov#preparation-conversion-1xkhm1ft",
+    "bids::prov#conversion-00f3a18f"
+  ]
+}
\ No newline at end of file
diff --git a/provenance_heudiconv/sub-001/anat/sub-001_run-1_T1w.nii.gz b/provenance_heudiconv/sub-001/anat/sub-001_run-1_T1w.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_heudiconv/sub-001/sub-001_scans.tsv b/provenance_heudiconv/sub-001/sub-001_scans.tsv
new file mode 100644
index 000000000..aa5e62479
--- /dev/null
+++ b/provenance_heudiconv/sub-001/sub-001_scans.tsv
@@ -0,0 +1,2 @@
+filename	acq_time	operator	randstr
+anat/sub-001_run-1_T1w.nii.gz	2013-07-17T13:25:18	n/a	e72d11b8
diff --git a/provenance_manual/.bidsignore b/provenance_manual/.bidsignore
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_manual/README.md b/provenance_manual/README.md
new file mode 100644
index 000000000..3b63d3238
--- /dev/null
+++ b/provenance_manual/README.md
@@ -0,0 +1,53 @@
+# Provenance of manual brain segmentations
+
+## Goal
+
+This example aims at showing provenance metadata for a study dataset in which several experts performed manual brain segmentations from the same T1w file.
+
+Some provenance information is provided for both `derivatives/seg` and `sourcedata/raw` datasets.
+
+## Directory tree
+
+> [!NOTE]
+> Note that the `docs/` directory contains explanatory data (see [Provenance as a RDF graph](#provenance-as-a-rdf-graph)) that is not required to encode provenance.
+
+```
+.
+├── dataset_description.json
+├── derivatives
+│   └── seg
+│       ├── dataset_description.json
+│       ├── descriptions.tsv
+│       ├── docs
+│       │   ├── prov-seg.jsonld
+│       │   └── prov-seg.png
+│       ├── prov
+│       │   ├── provenance.tsv
+│       │   ├── prov-seg_desc-exp1_act.json
+│       │   ├── prov-seg_desc-exp1_soft.json
+│       │   ├── prov-seg_desc-exp2_act.json
+│       │   ├── prov-seg_desc-exp2_soft.json
+│       │   └── prov-seg_ent.json
+│       └── sub-001
+│           └── anat
+│               ├── sub-001_space-orig_desc-exp1_dseg.json
+│               ├── sub-001_space-orig_desc-exp1_dseg.nii.gz
+│               ├── sub-001_space-orig_desc-exp2_dseg.json
+│               └── sub-001_space-orig_desc-exp2_dseg.nii.gz
+├── README.md
+└── sourcedata
+    └── raw
+        ├── dataset_description.json
+        ├── prov
+        │   └── prov-raw_ent.json
+        └── sub-001
+            └── anat
+                ├── sub-001_T1w.json
+                └── sub-001_T1w.nii.gz
+```
+
+## Provenance as a RDF graph
+
+Provenance metadata can be aggregated as a JSON-LD RDF graph, which is available in [`derivatives/seg/docs/prov-seg.jsonld`](derivatives/seg/docs/prov-seg.jsonld). This is a rendered version of the graph, also available in [`derivatives/seg/docs/prov-seg.png`](derivatives/seg/docs/prov-seg.png).
+
+![Rendered version of the RDF graph](derivatives/seg/docs/prov-seg.png)
diff --git a/provenance_manual/dataset_description.json b/provenance_manual/dataset_description.json
new file mode 100644
index 000000000..901b44576
--- /dev/null
+++ b/provenance_manual/dataset_description.json
@@ -0,0 +1,9 @@
+{
+  "Name": "Brain segmentations from 2 experts",
+  "BIDSVersion": "1.10.0",
+  "DatasetType": "study",
+  "License": "CC0",
+  "Authors": [
+    "Boris Clénet"
+  ]
+}
\ No newline at end of file
diff --git a/provenance_manual/derivatives/seg/dataset_description.json b/provenance_manual/derivatives/seg/dataset_description.json
new file mode 100644
index 000000000..dc5e4cb16
--- /dev/null
+++ b/provenance_manual/derivatives/seg/dataset_description.json
@@ -0,0 +1,12 @@
+{
+  "Name": "Manual brain segmentations",
+  "BIDSVersion": "1.10.0",
+  "DatasetType": "derivative",
+  "License": "CC0",
+  "Authors": [
+    "Boris Clénet"
+  ],
+  "DatasetLinks": {
+    "raw": "../../sourcedata/raw"
+  }
+}
\ No newline at end of file
diff --git a/provenance_manual/derivatives/seg/descriptions.tsv b/provenance_manual/derivatives/seg/descriptions.tsv
new file mode 100644
index 000000000..371d9ef6d
--- /dev/null
+++ b/provenance_manual/derivatives/seg/descriptions.tsv
@@ -0,0 +1,3 @@
+desc_id	description
+desc-seg1	Files generated by expert #1
+desc-seg2	Files generated by expert #2
diff --git a/provenance_manual/derivatives/seg/docs/prov-seg.jsonld b/provenance_manual/derivatives/seg/docs/prov-seg.jsonld
new file mode 100644
index 000000000..c22a9615c
--- /dev/null
+++ b/provenance_manual/derivatives/seg/docs/prov-seg.jsonld
@@ -0,0 +1,44 @@
+{
+  "BIDSProvVersion": "0.0.1",
+  "@context": "https://bids-specification--2099.org.readthedocs.build/en/2099/provenance-context.json",
+  "Records": {
+    "Software": [],
+    "Activities": [
+      {
+        "Id": "bids::prov#segmentation-nO5RGsrb",
+        "Label": "Manual brain segmentation",
+        "Command": null,
+        "Used": [
+          "bids:raw:sub-001/anat/sub-001_T1w.nii.gz"
+        ]
+      },
+      {
+        "Id": "bids::prov#segmentation-mOOypIYB",
+        "Label": "Manual brain segmentation",
+        "Command": null,
+        "Used": [
+          "bids:raw:sub-001/anat/sub-001_T1w.nii.gz"
+        ]
+      }
+    ],
+    "Files": [
+      {
+        "Id": "bids:raw:sub-001/anat/sub-001_T1w.nii.gz",
+        "Label": "T1w file"
+      },
+      {
+        "Id": "bids::sub-001/anat/sub-001_space-orig_desc-exp1_dseg.nii.gz",
+        "Label": "sub-001_space-orig_desc-exp1_dseg.nii.gz",
+        "AtLocation": "sub-001/anat/sub-001_space-orig_desc-exp1_dseg.nii.gz",
+        "GeneratedBy": "bids::prov#segmentation-nO5RGsrb"
+      },
+      {
+        "Id": "bids::sub-001/anat/sub-001_space-orig_desc-exp2_dseg.nii.gz",
+        "Label": "sub-001_space-orig_desc-exp2_dseg.nii.gz",
+        "AtLocation": "sub-001/anat/sub-001_space-orig_desc-exp2_dseg.nii.gz",
+        "GeneratedBy": "bids::prov#segmentation-mOOypIYB"
+      }
+    ],
+    "Environments": []
+  }
+}
\ No newline at end of file
diff --git a/provenance_manual/derivatives/seg/docs/prov-seg.png b/provenance_manual/derivatives/seg/docs/prov-seg.png
new file mode 100644
index 000000000..0aeb25fa6
Binary files /dev/null and b/provenance_manual/derivatives/seg/docs/prov-seg.png differ
diff --git a/provenance_manual/derivatives/seg/prov/prov-seg_desc-exp1_act.json b/provenance_manual/derivatives/seg/prov/prov-seg_desc-exp1_act.json
new file mode 100644
index 000000000..907b7e45a
--- /dev/null
+++ b/provenance_manual/derivatives/seg/prov/prov-seg_desc-exp1_act.json
@@ -0,0 +1,12 @@
+{
+  "Activities": [
+    {
+      "Id": "bids::prov#segmentation-nO5RGsrb",
+      "Label": "Manual brain segmentation",
+      "Command": null,
+      "Used": [
+        "bids:raw:sub-001/anat/sub-001_T1w.nii.gz"
+      ]
+    }
+  ]
+}
diff --git a/provenance_manual/derivatives/seg/prov/prov-seg_desc-exp2_act.json b/provenance_manual/derivatives/seg/prov/prov-seg_desc-exp2_act.json
new file mode 100644
index 000000000..109b177ed
--- /dev/null
+++ b/provenance_manual/derivatives/seg/prov/prov-seg_desc-exp2_act.json
@@ -0,0 +1,12 @@
+{
+  "Activities": [
+    {
+      "Id": "bids::prov#segmentation-mOOypIYB",
+      "Label": "Manual brain segmentation",
+      "Command": null,
+      "Used": [
+        "bids:raw:sub-001/anat/sub-001_T1w.nii.gz"
+      ]
+    }
+  ]
+}
diff --git a/provenance_manual/derivatives/seg/prov/prov-seg_ent.json b/provenance_manual/derivatives/seg/prov/prov-seg_ent.json
new file mode 100644
index 000000000..e0b817f02
--- /dev/null
+++ b/provenance_manual/derivatives/seg/prov/prov-seg_ent.json
@@ -0,0 +1,8 @@
+{
+  "Files": [
+    {
+      "Id": "bids:raw:sub-001/anat/sub-001_T1w.nii.gz",
+      "Label": "T1w file"
+    }
+  ]
+}
\ No newline at end of file
diff --git a/provenance_manual/derivatives/seg/prov/provenance.tsv b/provenance_manual/derivatives/seg/prov/provenance.tsv
new file mode 100644
index 000000000..a4fdd2bbf
--- /dev/null
+++ b/provenance_manual/derivatives/seg/prov/provenance.tsv
@@ -0,0 +1,2 @@
+provenance_label	description
+prov-seg	Manual brain segmentation performed by two experts
diff --git a/provenance_manual/derivatives/seg/sub-001/anat/sub-001_space-orig_desc-exp1_dseg.json b/provenance_manual/derivatives/seg/sub-001/anat/sub-001_space-orig_desc-exp1_dseg.json
new file mode 100644
index 000000000..ed7ebc6a4
--- /dev/null
+++ b/provenance_manual/derivatives/seg/sub-001/anat/sub-001_space-orig_desc-exp1_dseg.json
@@ -0,0 +1,3 @@
+{
+  "GeneratedBy": "bids::prov#segmentation-nO5RGsrb"
+}
\ No newline at end of file
diff --git a/provenance_manual/derivatives/seg/sub-001/anat/sub-001_space-orig_desc-exp1_dseg.nii.gz b/provenance_manual/derivatives/seg/sub-001/anat/sub-001_space-orig_desc-exp1_dseg.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_manual/derivatives/seg/sub-001/anat/sub-001_space-orig_desc-exp2_dseg.json b/provenance_manual/derivatives/seg/sub-001/anat/sub-001_space-orig_desc-exp2_dseg.json
new file mode 100644
index 000000000..28fed1304
--- /dev/null
+++ b/provenance_manual/derivatives/seg/sub-001/anat/sub-001_space-orig_desc-exp2_dseg.json
@@ -0,0 +1,3 @@
+{
+  "GeneratedBy": "bids::prov#segmentation-mOOypIYB"
+}
\ No newline at end of file
diff --git a/provenance_manual/derivatives/seg/sub-001/anat/sub-001_space-orig_desc-exp2_dseg.nii.gz b/provenance_manual/derivatives/seg/sub-001/anat/sub-001_space-orig_desc-exp2_dseg.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_manual/sourcedata/raw/dataset_description.json b/provenance_manual/sourcedata/raw/dataset_description.json
new file mode 100644
index 000000000..c6ba04644
--- /dev/null
+++ b/provenance_manual/sourcedata/raw/dataset_description.json
@@ -0,0 +1,9 @@
+{
+  "Name": "T1w image of one participant",
+  "BIDSVersion": "1.10.0",
+  "DatasetType": "raw",
+  "License": "CC0",
+  "Authors": [
+    "Boris Clénet"
+  ]
+}
\ No newline at end of file
diff --git a/provenance_manual/sourcedata/raw/prov/prov-raw_ent.json b/provenance_manual/sourcedata/raw/prov/prov-raw_ent.json
new file mode 100644
index 000000000..6e4660b06
--- /dev/null
+++ b/provenance_manual/sourcedata/raw/prov/prov-raw_ent.json
@@ -0,0 +1,11 @@
+{
+  "Files": [
+    {
+      "Id": "bids:raw:sub-001/anat/sub-001_T1w.nii.gz",
+      "Label": "sub-001/anat/sub-001_T1w.nii.gz",
+      "Digest": {
+        "SHA-256": "66eeafb465559148e0222d4079558a8354eb09b9efabcc47cd5b8af6eed51907"
+      }
+    }
+  ]
+}
\ No newline at end of file
diff --git a/provenance_manual/sourcedata/raw/sub-001/anat/sub-001_T1w.json b/provenance_manual/sourcedata/raw/sub-001/anat/sub-001_T1w.json
new file mode 100644
index 000000000..3c6ebf8fb
--- /dev/null
+++ b/provenance_manual/sourcedata/raw/sub-001/anat/sub-001_T1w.json
@@ -0,0 +1,8 @@
+{
+  "RepetitionTime": 2.53,
+  "EchoTime": 0.00299,
+  "FlipAngle": 7,
+  "Manufacturer": "SIEMENS",
+  "ManufacturersModelName": "Prisma",
+  "MagneticFieldStrength": 3 
+}
\ No newline at end of file
diff --git a/provenance_manual/sourcedata/raw/sub-001/anat/sub-001_T1w.nii.gz b/provenance_manual/sourcedata/raw/sub-001/anat/sub-001_T1w.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_nilearn/.bidsignore b/provenance_nilearn/.bidsignore
new file mode 100644
index 000000000..2cc698a74
--- /dev/null
+++ b/provenance_nilearn/.bidsignore
@@ -0,0 +1 @@
+sub-10159/*
\ No newline at end of file
diff --git a/provenance_nilearn/README.md b/provenance_nilearn/README.md
new file mode 100644
index 000000000..95885fc95
--- /dev/null
+++ b/provenance_nilearn/README.md
@@ -0,0 +1,82 @@
+# Provenance of fMRI first-level analysis with Nilearn
+
+This BIDS example shows provenance metadata for [Nilearn's](https://nilearn.github.io/) example ["First level analysis of a complete BIDS dataset from openneuro"](https://nilearn.github.io/0.12.0/auto_examples/04_glm_first_level/plot_bids_features.html).
+
+> [!WARNING]
+> We don't know right now how to deal with the BIDS validator "NOT_INCLUDED" error that occurs on files
+> generated by Nilearn. For now we focus on validating the (non sidecar) provenance metadata only.
+> As a result, validation of the `sub-10159` directory is ignored through a `.bidsignore` file.
+
+In version 0.12.0, Nilearn provides the following BIDS compliant provenance metadata inside the `dataset_description.json` generated by this example.
+
+```JSON
+"GeneratedBy": [
+  {
+    "CodeURL": "https://github.com/nilearn/nilearn/releases/tag/0.12.0",
+    "Description": "A Nilearn First Level Model-level GLM.",
+    "Name": "nilearn",
+    "Version": "0.12.0"
+  }
+]
+```
+
+The provenance metadata we created for this example offers to be more precise while showing no regression with respect to this `GeneratedBy`. Indeed the information provided by every metadata field in the `GeneratedBy` can be retrieved or has an equivalent representation in this example:
+* `CodeURL` corresponds to the `AltIdentifier` of the Nilearn software (Id `bids::prov#nilearn-JAk1fM3q`) described inside `prov/prov-nilearn_soft.json`
+* `Description` corresponds to the `Description` of the `bids::prov#glm-TzAuB7k8` activity described inside `prov/prov-nilearn_act.json`
+* `Name` corresponds to the `Label` of the `bids::prov#glm-TzAuB7k8` activity described inside `prov/prov-nilearn_act.json`
+* `Version` corresponds to the `Version` of the Nilearn software (Id `bids::prov#nilearn-JAk1fM3q`) described inside `prov/prov-nilearn_soft.json`
+
+## Original data
+
+This is a derivative dataset, based upon `sub-10159` data from OpenfMRI DS000030 (cf. https://openneuro.org/datasets/ds000030/).
+
+## Code
+
+The code that generated this dataset is the ["First level analysis of a complete BIDS dataset from openneuro"](https://nilearn.github.io/0.12.0/auto_examples/04_glm_first_level/plot_bids_features.html) example from Nilearn version 0.12.0.
+The corresponding python script is available on [Nilearn's github project](https://github.com/nilearn/nilearn/blob/0.12.0/examples/04_glm_first_level/plot_bids_features.py).
+
+## Directory tree
+
+The directory tree is as follows. Files marked with a ✍️ were generated manually, other files were generated by the analysis step.
+Generated files were emptied.
+
+> [!NOTE]
+> Note that the `docs/` directory contains explanatory data (see [Provenance as a RDF graph](#provenance-as-a-rdf-graph)) that is not required to encode provenance.
+
+```
+.
+├── ✍️ dataset_description.json
+├── ✍️ docs
+│   ├── ✍️ prov-nilearn.jsonld
+│   └── ✍️ prov-nilearn.png
+├── ✍️ prov
+│   ├── ✍️ prov-nilearn_act.json
+│   ├── ✍️ prov-nilearn_ent.json
+│   ├── ✍️ prov-nilearn_env.json
+│   └── ✍️ prov-nilearn_soft.json
+├── ✍️ README.md
+└── sub-10159
+    ├── report.html
+    ├── statmap.json
+    ├── sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_clusters.json
+    ├── sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_clusters.tsv
+    ├── sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_design.png
+    ├── sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_stat-effect_statmap.nii.gz
+    ├── sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_stat-p_statmap.nii.gz
+    ├── sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_stat-t_statmap.nii.gz
+    ├── sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_stat-variance_statmap.nii.gz
+    ├── sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_stat-z_statmap.nii.gz
+    ├── sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_corrdesign.png
+    ├── sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_design.json
+    ├── sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_design.png
+    ├── sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_design.tsv
+    ├── sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_mask.nii.gz
+    ├── sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_stat-errorts_statmap.nii.gz
+    └── sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_stat-rsquared_statmap.nii.gz
+```
+
+## Provenance as a RDF graph
+
+Provenance metadata can be aggregated as a JSON-LD RDF graph, which is available in [`docs/prov-nilearn.jsonld`](docs/prov-nilearn.jsonld). This is a rendered version of the graph, also available in docs/prov-nilearn.png.
+
+![Rendered version of the RDF graph](docs/prov-nilearn.png)
diff --git a/provenance_nilearn/dataset_description.json b/provenance_nilearn/dataset_description.json
new file mode 100644
index 000000000..7abd841f6
--- /dev/null
+++ b/provenance_nilearn/dataset_description.json
@@ -0,0 +1,21 @@
+{
+  "Name": "Provenance metadata for Nilearn-based fMRI statistical analysis",
+  "BIDSVersion": "1.10.0",
+  "DatasetType": "derivative",
+  "License": "CC0",
+  "Authors": [
+    "Boris Clénet"
+  ],
+  "DatasetLinks": {
+    "ds000030": "https://openneuro.org/datasets/ds000030/versions/00004"
+  },
+  "SourceDatasets": [
+    {
+      "URL": "shttps://openneuro.org/datasets/ds000030",
+      "Version": "0004"
+    }
+  ],
+  "GeneratedBy": [
+    "bids::prov#glm-TzAuB7k8"
+  ]
+}
\ No newline at end of file
diff --git a/provenance_nilearn/docs/prov-nilearn.jsonld b/provenance_nilearn/docs/prov-nilearn.jsonld
new file mode 100644
index 000000000..57cb45838
--- /dev/null
+++ b/provenance_nilearn/docs/prov-nilearn.jsonld
@@ -0,0 +1,100 @@
+{
+  "@context": "https://bids-specification--2099.org.readthedocs.build/en/2099/provenance-context.json",
+  "Records": {
+    "Software": [
+      {
+        "Id": "bids::prov#python-RcggGffB",
+        "Label": "Python",
+        "Version": "3.10.11"
+      },
+      {
+        "Id": "bids::prov#nilearn-JAk1fM3q",
+        "Label": "Nilearn",
+        "Version": "0.12.0",
+        "AlternativeIdentifier": [
+          "https://github.com/nilearn/nilearn/releases/tag/0.12.0"
+        ],
+        "ActedOnBehalfOf": [
+          "bids::prov#python-RcggGffB"
+        ]
+      }
+    ],
+    "Activities": [
+      {
+        "Id": "bids::prov#glm-TzAuB7k8",
+        "Label": "first level analysis",
+        "Description": "A Nilearn First Level Model-level GLM.",
+        "Command": "python plot_bids_features.py",
+        "AssociatedWith": [
+          "bids::prov#python-RcggGffB",
+          "bids::prov#nilearn-JAk1fM3q"
+        ],
+        "Used": [
+          "bids::prov#entity-A6CltiO4",
+          "bids:ds000030",
+          "bids::prov#virtualenv-Mjn5ZRoX"
+        ]
+      }
+    ],
+    "Files": [
+      {
+        "Id": "bids::prov#entity-A6CltiO4",
+        "Label": "plot_bids_features.py",
+        "AtLocation": "https://github.com/nilearn/nilearn/blob/0.12.0/examples/04_glm_first_level/plot_bids_features.py"
+      }
+    ],
+    "Datasets": [
+      {
+        "Id": "bids:ds000030",
+        "Label": "UCLA Consortium for Neuropsychiatric Phenomics LA5c Study"
+      },
+      {
+        "Id": "bids:current_dataset",
+        "Label": "Provenance metadata for Nilearn-based fMRI statistical analysis",
+        "GeneratedBy": [
+          "bids::prov#glm-TzAuB7k8"
+        ]
+      }
+    ],
+    "prov:Entity": [],
+    "Environments": [
+      {
+        "Id": "bids::prov#virtualenv-Mjn5ZRoX",
+        "Label": "Python virtual environment",
+        "OperatingSystem": "Fedora Linux 36",
+        "Dependencies": {
+          "certifi": "2025.11.12",
+          "charset-normalizer": "3.4.4",
+          "contourpy": "1.3.2",
+          "cycler": "0.12.1",
+          "fonttools": "4.61.1",
+          "idna": "3.11",
+          "importlib_resources": "6.5.2",
+          "Jinja2": "3.1.6",
+          "joblib": "1.5.3",
+          "kiwisolver": "1.4.9",
+          "lxml": "6.0.2",
+          "MarkupSafe": "3.0.3",
+          "matplotlib": "3.10.8",
+          "nibabel": "5.3.3",
+          "nilearn": "0.12.0",
+          "numpy": "2.2.6",
+          "packaging": "25.0",
+          "pandas": "2.3.3",
+          "pillow": "12.0.0",
+          "pyparsing": "3.2.5",
+          "python-dateutil": "2.9.0.post0",
+          "pytz": "2025.2",
+          "requests": "2.32.5",
+          "scikit-learn": "1.7.2",
+          "scipy": "1.15.3",
+          "six": "1.17.0",
+          "threadpoolctl": "3.6.0",
+          "typing_extensions": "4.15.0",
+          "tzdata": "2025.3",
+          "urllib3": "2.6.2"
+        }
+      }
+    ]
+  }
+}
\ No newline at end of file
diff --git a/provenance_nilearn/docs/prov-nilearn.png b/provenance_nilearn/docs/prov-nilearn.png
new file mode 100644
index 000000000..fb550c32d
Binary files /dev/null and b/provenance_nilearn/docs/prov-nilearn.png differ
diff --git a/provenance_nilearn/prov/prov-nilearn_act.json b/provenance_nilearn/prov/prov-nilearn_act.json
new file mode 100644
index 000000000..2ec7bf06d
--- /dev/null
+++ b/provenance_nilearn/prov/prov-nilearn_act.json
@@ -0,0 +1,19 @@
+{
+  "Activities": [
+    {
+      "Id": "bids::prov#glm-TzAuB7k8",
+      "Label": "first level analysis",
+      "Description": "A Nilearn First Level Model-level GLM.",
+      "Command": "python plot_bids_features.py",
+      "AssociatedWith": [
+        "bids::prov#python-RcggGffB",
+        "bids::prov#nilearn-JAk1fM3q"
+      ],
+      "Used": [
+        "bids::prov#entity-A6CltiO4",
+        "bids:ds000030:.",
+        "bids::prov#virtualenv-Mjn5ZRoX"
+      ]
+    }
+  ]
+}
diff --git a/provenance_nilearn/prov/prov-nilearn_ent.json b/provenance_nilearn/prov/prov-nilearn_ent.json
new file mode 100644
index 000000000..91db408ca
--- /dev/null
+++ b/provenance_nilearn/prov/prov-nilearn_ent.json
@@ -0,0 +1,15 @@
+{
+  "Files": [
+    {
+      "Id": "bids::prov#entity-A6CltiO4",
+      "Label": "plot_bids_features.py",
+      "AtLocation": "https://github.com/nilearn/nilearn/blob/0.12.0/examples/04_glm_first_level/plot_bids_features.py"
+    }
+  ],
+  "Datasets": [
+    {
+      "Id": "bids:ds000030:.",
+      "Label": "UCLA Consortium for Neuropsychiatric Phenomics LA5c Study"
+    }
+  ]
+}
\ No newline at end of file
diff --git a/provenance_nilearn/prov/prov-nilearn_env.json b/provenance_nilearn/prov/prov-nilearn_env.json
new file mode 100644
index 000000000..a0f2f8731
--- /dev/null
+++ b/provenance_nilearn/prov/prov-nilearn_env.json
@@ -0,0 +1,41 @@
+{
+  "Environments": [
+    {
+      "Id": "bids::prov#virtualenv-Mjn5ZRoX",
+      "Label": "Python virtual environment",
+      "OperatingSystem": "Fedora Linux 36",
+      "Dependencies": {
+        "certifi": "2025.11.12",
+        "charset-normalizer": "3.4.4",
+        "contourpy": "1.3.2",
+        "cycler": "0.12.1",
+        "fonttools": "4.61.1",
+        "idna": "3.11",
+        "importlib_resources": "6.5.2",
+        "Jinja2": "3.1.6",
+        "joblib": "1.5.3",
+        "kiwisolver": "1.4.9",
+        "lxml": "6.0.2",
+        "MarkupSafe": "3.0.3",
+        "matplotlib": "3.10.8",
+        "nibabel": "5.3.3",
+        "nilearn": "0.12.0",
+        "numpy": "2.2.6",
+        "packaging": "25.0",
+        "pandas": "2.3.3",
+        "pillow": "12.0.0",
+        "pyparsing": "3.2.5",
+        "python-dateutil": "2.9.0.post0",
+        "pytz": "2025.2",
+        "requests": "2.32.5",
+        "scikit-learn": "1.7.2",
+        "scipy": "1.15.3",
+        "six": "1.17.0",
+        "threadpoolctl": "3.6.0",
+        "typing_extensions": "4.15.0",
+        "tzdata": "2025.3",
+        "urllib3": "2.6.2"
+      }
+    }
+  ]
+}
diff --git a/provenance_nilearn/prov/prov-nilearn_soft.json b/provenance_nilearn/prov/prov-nilearn_soft.json
new file mode 100644
index 000000000..b9f84207d
--- /dev/null
+++ b/provenance_nilearn/prov/prov-nilearn_soft.json
@@ -0,0 +1,20 @@
+{
+  "Software": [
+    {
+      "Id": "bids::prov#python-RcggGffB",
+      "Label": "Python",
+      "Version": "3.10.11"
+    },
+    {
+      "Id": "bids::prov#nilearn-JAk1fM3q",
+      "Label": "Nilearn",
+      "Version": "0.12.0",
+      "AlternativeIdentifier": [
+        "https://github.com/nilearn/nilearn/releases/tag/0.12.0"
+      ],
+      "ActedOnBehalfOf": [
+        "bids::prov#python-RcggGffB"
+      ]
+    }
+  ]
+}
diff --git a/provenance_nilearn/sub-10159/report.html b/provenance_nilearn/sub-10159/report.html
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_nilearn/sub-10159/statmap.json b/provenance_nilearn/sub-10159/statmap.json
new file mode 100644
index 000000000..9e26dfeeb
--- /dev/null
+++ b/provenance_nilearn/sub-10159/statmap.json
@@ -0,0 +1 @@
+{}
\ No newline at end of file
diff --git a/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_clusters.json b/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_clusters.json
new file mode 100644
index 000000000..9e26dfeeb
--- /dev/null
+++ b/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_clusters.json
@@ -0,0 +1 @@
+{}
\ No newline at end of file
diff --git a/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_clusters.tsv b/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_clusters.tsv
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_design.png b/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_design.png
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_stat-effect_statmap.nii.gz b/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_stat-effect_statmap.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_stat-p_statmap.nii.gz b/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_stat-p_statmap.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_stat-t_statmap.nii.gz b/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_stat-t_statmap.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_stat-variance_statmap.nii.gz b/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_stat-variance_statmap.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_stat-z_statmap.nii.gz b/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_contrast-stopsuccessMinusGo_stat-z_statmap.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_corrdesign.png b/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_corrdesign.png
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_design.json b/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_design.json
new file mode 100644
index 000000000..9e26dfeeb
--- /dev/null
+++ b/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_design.json
@@ -0,0 +1 @@
+{}
\ No newline at end of file
diff --git a/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_design.png b/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_design.png
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_design.tsv b/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_design.tsv
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_mask.nii.gz b/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_mask.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_stat-errorts_statmap.nii.gz b/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_stat-errorts_statmap.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_stat-rsquared_statmap.nii.gz b/provenance_nilearn/sub-10159/sub-10159_task-stopsignal_space-MNI152NLin2009cAsym_stat-rsquared_statmap.nii.gz
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_spm/.bidsignore b/provenance_spm/.bidsignore
new file mode 100644
index 000000000..f80a7a0af
--- /dev/null
+++ b/provenance_spm/.bidsignore
@@ -0,0 +1 @@
+sub-01/*
\ No newline at end of file
diff --git a/provenance_spm/README.md b/provenance_spm/README.md
new file mode 100644
index 000000000..c05ca0ad3
--- /dev/null
+++ b/provenance_spm/README.md
@@ -0,0 +1,99 @@
+# Provenance of fMRI preprocessing with SPM
+
+This example aims at showing provenance metadata for a functional MRI preprocessing performed with [`SPM`](https://www.fil.ion.ucl.ac.uk/spm/). Provenance metadata was created manually ; it acts as a guideline for further machine-generated provenance by `SPM`. 
+
+> [!WARNING]
+> We don't know right now how to deal with the "NOT_INCLUDED" error that occurs on files
+> generated by SPM (and their sidecars). For now we focus on validating the (non sidecar) provenance metadata only.
+> As a result, validation of the `sub-01/` directory is ignored through a `.bidsignore` file.
+
+## Original dataset
+
+This is a derivative dataset, based upon `sub-01` data from OpenfMRI DS000011 classification learning and tone counting experiment (cf. https://openfmri.org/dataset/ds000011/).
+
+## Code
+
+The Matlab batch file `code/spm_preprocessing.m` allows to perform the preprocessing.
+
+## Directory tree
+
+The directory tree is as follows. Files marked with a ✍️ were generated manually, other files were generated by the preprocessing step.
+
+> [!NOTE]
+> Note that the `docs/` directory contains explanatory data (see [Provenance as a RDF graph](#provenance-as-a-rdf-graph)) that is not required to encode provenance.
+
+```
+.
+├── ✍️ code
+│   └── ✍️ spm_preprocessing.m
+├── ✍️ dataset_description.json
+├── ✍️ docs
+│   ├── ✍️ prov-spm.jsonld
+│   └── ✍️ prov-spm.png
+├── ✍️ prov
+│   ├── ✍️ prov-spm_act.json
+│   ├── ✍️ prov-spm_ent.json
+│   └── ✍️ prov-spm_soft.json
+├── ✍️ README.md
+└── sub-01
+    ├── anat
+    │   ├── ✍️ c1sub-01_T1w.json
+    │   ├── c1sub-01_T1w.nii
+    │   ├── ✍️ c2sub-01_T1w.json
+    │   ├── c2sub-01_T1w.nii
+    │   ├── ✍️ c3sub-01_T1w.json
+    │   ├── c3sub-01_T1w.nii
+    │   ├── ✍️ c4sub-01_T1w.json
+    │   ├── c4sub-01_T1w.nii
+    │   ├── ✍️ c5sub-01_T1w.json
+    │   ├── c5sub-01_T1w.nii
+    │   ├── ✍️ msub-01_T1w.json
+    │   ├── msub-01_T1w.nii
+    │   ├── ✍️ sub-01_T1w.json
+    │   ├── sub-01_T1w.nii
+    │   ├── ✍️ sub-01_T1w_seg8.json
+    │   ├── sub-01_T1w_seg8.mat
+    │   ├── ✍️ wmsub-01_T1w.json
+    │   ├── wmsub-01_T1w.nii
+    │   ├── ✍️ y_sub-01_T1w.json
+    │   └── y_sub-01_T1w.nii
+    └── func
+        ├── ✍️ meansub-01_task-tonecounting_bold.json
+        ├── meansub-01_task-tonecounting_bold.nii
+        ├── ✍️ rp_sub-01_task-tonecounting_bold.json
+        ├── rp_sub-01_task-tonecounting_bold.txt
+        ├── ✍️ rsub-01_task-tonecounting_bold.json
+        ├── rsub-01_task-tonecounting_bold.nii
+        ├── sub-01_task-tonecounting_bold.mat
+        ├── sub-01_task-tonecounting_bold.nii
+        ├── ✍️ swrsub-01_task-tonecounting_bold.json
+        ├── swrsub-01_task-tonecounting_bold.nii
+        ├── ✍️ wrsub-01_task-tonecounting_bold.json
+        └── wrsub-01_task-tonecounting_bold.nii
+```
+
+## Provenance as a RDF graph
+
+Provenance metadata can be aggregated as a JSON-LD RDF graph, which is available in [`docs/prov-spm.jsonld`](docs/prov-spm.jsonld). This is a rendered version of the graph, also available in docs/prov-spm.png.
+
+![Rendered version of the RDF graph](docs/prov-spm.png)
+
+## Description of processes or pipelines
+
+Provenance can also be described by providing `GeneratedBy` with an array of objects representing pipelines or processes that generated the dataset.
+
+In this case, the `GeneratedBy` field of the `dataset_description.json` file would have contain:
+
+```JSON
+{
+    ...
+    "GeneratedBy": [
+        {
+          "Name": "SPM preprocessing",
+          "Version": "SPM12r7771",
+          "Description": "Preprocessing of anatomical and functional MRI data with SPM",
+          "CodeURL": "bids::code/spm_preprocessing.m"
+        }
+    ]
+}
+```
diff --git a/provenance_spm/code/spm_preprocessing.m b/provenance_spm/code/spm_preprocessing.m
new file mode 100644
index 000000000..a07b033c2
--- /dev/null
+++ b/provenance_spm/code/spm_preprocessing.m
@@ -0,0 +1,89 @@
+%-----------------------------------------------------------------------
+% Job saved on 06-Jun-2025 15:40:49 by cfg_util (rev $Rev: 7345 $)
+% spm SPM - SPM12 (7771)
+% cfg_basicio BasicIO - Unknown
+%-----------------------------------------------------------------------
+matlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.files = {'data/sub-01/func/sub-01_task-tonecounting_bold.nii.gz'};
+matlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'sub-01/func'};
+matlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.files = {'data/sub-01/anat/sub-01_T1w.nii.gz'};
+matlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'sub-01/anat'};
+matlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));
+matlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.outdir = {''};
+matlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.keep = false;
+matlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));
+matlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.outdir = {''};
+matlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.keep = false;
+matlabbatch{5}.spm.spatial.realign.estwrite.data{1}(1) = cfg_dep('Gunzip Files: Gunzipped Files', substruct('.','val', '{}',{3}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));
+matlabbatch{5}.spm.spatial.realign.estwrite.eoptions.quality = 0.9;
+matlabbatch{5}.spm.spatial.realign.estwrite.eoptions.sep = 4;
+matlabbatch{5}.spm.spatial.realign.estwrite.eoptions.fwhm = 5;
+matlabbatch{5}.spm.spatial.realign.estwrite.eoptions.rtm = 1;
+matlabbatch{5}.spm.spatial.realign.estwrite.eoptions.interp = 2;
+matlabbatch{5}.spm.spatial.realign.estwrite.eoptions.wrap = [0 0 0];
+matlabbatch{5}.spm.spatial.realign.estwrite.eoptions.weight = '';
+matlabbatch{5}.spm.spatial.realign.estwrite.roptions.which = [2 1];
+matlabbatch{5}.spm.spatial.realign.estwrite.roptions.interp = 4;
+matlabbatch{5}.spm.spatial.realign.estwrite.roptions.wrap = [0 0 0];
+matlabbatch{5}.spm.spatial.realign.estwrite.roptions.mask = 1;
+matlabbatch{5}.spm.spatial.realign.estwrite.roptions.prefix = 'r';
+matlabbatch{6}.spm.spatial.coreg.estimate.ref(1) = cfg_dep('Realign: Estimate & Reslice: Mean Image', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','rmean'));
+matlabbatch{6}.spm.spatial.coreg.estimate.source(1) = cfg_dep('Gunzip Files: Gunzipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));
+matlabbatch{6}.spm.spatial.coreg.estimate.other = {''};
+matlabbatch{6}.spm.spatial.coreg.estimate.eoptions.cost_fun = 'nmi';
+matlabbatch{6}.spm.spatial.coreg.estimate.eoptions.sep = [4 2];
+matlabbatch{6}.spm.spatial.coreg.estimate.eoptions.tol = [0.02 0.02 0.02 0.001 0.001 0.001 0.01 0.01 0.01 0.001 0.001 0.001];
+matlabbatch{6}.spm.spatial.coreg.estimate.eoptions.fwhm = [7 7];
+matlabbatch{7}.spm.spatial.preproc.channel.vols(1) = cfg_dep('Gunzip Files: Gunzipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));
+matlabbatch{7}.spm.spatial.preproc.channel.biasreg = 0.001;
+matlabbatch{7}.spm.spatial.preproc.channel.biasfwhm = 60;
+matlabbatch{7}.spm.spatial.preproc.channel.write = [0 1];
+matlabbatch{7}.spm.spatial.preproc.tissue(1).tpm = {'/opt/spm12-r7219/spm12_mcr/spm12/tpm/TPM.nii,1'};
+matlabbatch{7}.spm.spatial.preproc.tissue(1).ngaus = 1;
+matlabbatch{7}.spm.spatial.preproc.tissue(1).native = [1 0];
+matlabbatch{7}.spm.spatial.preproc.tissue(1).warped = [0 0];
+matlabbatch{7}.spm.spatial.preproc.tissue(2).tpm = {'/opt/spm12-r7219/spm12_mcr/spm12/tpm/TPM.nii,2'};
+matlabbatch{7}.spm.spatial.preproc.tissue(2).ngaus = 1;
+matlabbatch{7}.spm.spatial.preproc.tissue(2).native = [1 0];
+matlabbatch{7}.spm.spatial.preproc.tissue(2).warped = [0 0];
+matlabbatch{7}.spm.spatial.preproc.tissue(3).tpm = {'/opt/spm12-r7219/spm12_mcr/spm12/tpm/TPM.nii,3'};
+matlabbatch{7}.spm.spatial.preproc.tissue(3).ngaus = 2;
+matlabbatch{7}.spm.spatial.preproc.tissue(3).native = [1 0];
+matlabbatch{7}.spm.spatial.preproc.tissue(3).warped = [0 0];
+matlabbatch{7}.spm.spatial.preproc.tissue(4).tpm = {'/opt/spm12-r7219/spm12_mcr/spm12/tpm/TPM.nii,4'};
+matlabbatch{7}.spm.spatial.preproc.tissue(4).ngaus = 3;
+matlabbatch{7}.spm.spatial.preproc.tissue(4).native = [1 0];
+matlabbatch{7}.spm.spatial.preproc.tissue(4).warped = [0 0];
+matlabbatch{7}.spm.spatial.preproc.tissue(5).tpm = {'/opt/spm12-r7219/spm12_mcr/spm12/tpm/TPM.nii,5'};
+matlabbatch{7}.spm.spatial.preproc.tissue(5).ngaus = 4;
+matlabbatch{7}.spm.spatial.preproc.tissue(5).native = [1 0];
+matlabbatch{7}.spm.spatial.preproc.tissue(5).warped = [0 0];
+matlabbatch{7}.spm.spatial.preproc.tissue(6).tpm = {'/opt/spm12-r7219/spm12_mcr/spm12/tpm/TPM.nii,6'};
+matlabbatch{7}.spm.spatial.preproc.tissue(6).ngaus = 2;
+matlabbatch{7}.spm.spatial.preproc.tissue(6).native = [0 0];
+matlabbatch{7}.spm.spatial.preproc.tissue(6).warped = [0 0];
+matlabbatch{7}.spm.spatial.preproc.warp.mrf = 1;
+matlabbatch{7}.spm.spatial.preproc.warp.cleanup = 1;
+matlabbatch{7}.spm.spatial.preproc.warp.reg = [0 0.001 0.5 0.05 0.2];
+matlabbatch{7}.spm.spatial.preproc.warp.affreg = 'mni';
+matlabbatch{7}.spm.spatial.preproc.warp.fwhm = 0;
+matlabbatch{7}.spm.spatial.preproc.warp.samp = 3;
+matlabbatch{7}.spm.spatial.preproc.warp.write = [0 1];
+matlabbatch{7}.spm.spatial.preproc.warp.vox = NaN;
+matlabbatch{7}.spm.spatial.preproc.warp.bb = [NaN NaN NaN NaN NaN NaN];
+matlabbatch{8}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));
+matlabbatch{8}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Realign: Estimate & Reslice: Resliced Images (Sess 1)', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','sess', '()',{1}, '.','rfiles'));
+matlabbatch{8}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];
+matlabbatch{8}.spm.spatial.normalise.write.woptions.vox = [2 2 2];
+matlabbatch{8}.spm.spatial.normalise.write.woptions.interp = 4;
+matlabbatch{8}.spm.spatial.normalise.write.woptions.prefix = 'w';
+matlabbatch{9}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));
+matlabbatch{9}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Segment: Bias Corrected (1)', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','channel', '()',{1}, '.','biascorr', '()',{':'}));
+matlabbatch{9}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];
+matlabbatch{9}.spm.spatial.normalise.write.woptions.vox = [2 2 2];
+matlabbatch{9}.spm.spatial.normalise.write.woptions.interp = 4;
+matlabbatch{9}.spm.spatial.normalise.write.woptions.prefix = 'w';
+matlabbatch{10}.spm.spatial.smooth.data(1) = cfg_dep('Normalise: Write: Normalised Images (Subj 1)', substruct('.','val', '{}',{8}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{1}, '.','files'));
+matlabbatch{10}.spm.spatial.smooth.fwhm = [6 6 6];
+matlabbatch{10}.spm.spatial.smooth.dtype = 0;
+matlabbatch{10}.spm.spatial.smooth.im = 0;
+matlabbatch{10}.spm.spatial.smooth.prefix = 's';
\ No newline at end of file
diff --git a/provenance_spm/dataset_description.json b/provenance_spm/dataset_description.json
new file mode 100644
index 000000000..4c3720f41
--- /dev/null
+++ b/provenance_spm/dataset_description.json
@@ -0,0 +1,29 @@
+{
+    "Name": "Provenance metadata for SPM-based fMRI preprocessing",
+    "BIDSVersion": "1.10.0",
+    "DatasetType": "derivative",
+    "License": "CC0",
+    "Authors": [
+        "Boris Clénet",
+        "Thomas Betton",
+        "Hermann Courteille",
+        "Cyril Regan"
+    ],
+    "GeneratedBy": [
+        {
+            "Name": "SPM preprocessing"
+        }
+    ],
+    "SourceDatasets": [
+        {
+            "URL": "ds000011",
+            "Version": "1.0.0"
+        },
+        {
+            "URL": "https://github.com/incf-nidash/nidmresults-examples/"
+        }
+    ],
+    "DatasetLinks": {
+        "ds000011": "https://doi.org/10.18112/openneuro.ds000011.v1.0.0"
+    }
+}
\ No newline at end of file
diff --git a/provenance_spm/docs/prov-spm.jsonld b/provenance_spm/docs/prov-spm.jsonld
new file mode 100644
index 000000000..df75e9e52
--- /dev/null
+++ b/provenance_spm/docs/prov-spm.jsonld
@@ -0,0 +1,392 @@
+{
+  "@context": "https://bids-specification--2099.org.readthedocs.build/en/2099/provenance-context.json",
+  "Records": {
+    "Software": [
+      {
+        "Id": "bids::prov#spm-fa0baf93",
+        "AlternativeIdentifier": [
+          "RRID:SCR_007037"
+        ],
+        "Label": "SPM",
+        "Version": "SPM12r7771"
+      }
+    ],
+    "Activities": [
+      {
+        "Id": "bids::prov#movefile-26803be5",
+        "Label": "Move file",
+        "Used": [
+          "bids:ds000011:sub-01/func/sub-01_task-tonecounting_bold.nii.gz"
+        ],
+        "AssociatedWith": [
+          "bids::prov#spm-fa0baf93"
+        ],
+        "Command": "matlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.files = {'data/sub-01/func/sub-01_task-tonecounting_bold.nii.gz'};\nmatlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'sub-01/func'};",
+        "StartedAtTime": "2025-05-28T14:48:00",
+        "EndedAtTime": "2025-05-28T14:48:01"
+      },
+      {
+        "Id": "bids::prov#movefile-bac3f385",
+        "Label": "Move file",
+        "Used": [
+          "bids:ds000011:sub-01/anat/sub-01_T1w.nii.gz"
+        ],
+        "AssociatedWith": [
+          "bids::prov#spm-fa0baf93"
+        ],
+        "Command": "matlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.files = {'data/sub-01/anat/sub-01_T1w.nii.gz'};\nmatlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'sub-01/anat'};",
+        "StartedAtTime": "2025-05-28T14:48:00",
+        "EndedAtTime": "2025-05-28T14:48:01"
+      },
+      {
+        "Id": "bids::prov#gunzip-ca36a952",
+        "Label": "Gunzip",
+        "Used": [
+          "bids::sub-01/func/sub-01_task-tonecounting_bold.nii.gz#5ff4404f"
+        ],
+        "AssociatedWith": [
+          "bids::prov#spm-fa0baf93"
+        ],
+        "Command": "matlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));\nmatlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.outdir = {''};\nmatlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.keep = false;",
+        "StartedAtTime": "2025-05-28T14:48:01",
+        "EndedAtTime": "2025-05-28T14:48:02"
+      },
+      {
+        "Id": "bids::prov#gunzip-e9264918",
+        "Label": "Gunzip",
+        "Used": [
+          "bids::sub-01/anat/sub-01_T1w.nii.gz#b31b2089"
+        ],
+        "AssociatedWith": [
+          "bids::prov#spm-fa0baf93"
+        ],
+        "Command": "matlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));\nmatlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.outdir = {''};\nmatlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.keep = false;",
+        "StartedAtTime": "2025-05-28T14:48:01",
+        "EndedAtTime": "2025-05-28T14:48:02"
+      },
+      {
+        "Id": "bids::prov#realign-acea8093",
+        "Label": "Realign",
+        "Used": [
+          "bids::sub-01/func/sub-01_task-tonecounting_bold.nii#487a9894"
+        ],
+        "AssociatedWith": [
+          "bids::prov#spm-fa0baf93"
+        ],
+        "Command": "matlabbatch{5}.spm.spatial.realign.estwrite.data{1}(1) = cfg_dep('Gunzip Files: Gunzipped Files', substruct('.','val', '{}',{3}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.quality = 0.9;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.sep = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.fwhm = 5;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.rtm = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.interp = 2;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.weight = '';\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.which = [2 1];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.interp = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.mask = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.prefix = 'r';",
+        "StartedAtTime": "2025-05-28T14:48:03",
+        "EndedAtTime": "2025-05-28T14:48:12"
+      },
+      {
+        "Id": "bids::prov#coregister-6d38be4a",
+        "Label": "Coregister",
+        "Used": [
+          "bids::sub-01/func/meansub-01_task-tonecounting_bold.nii",
+          "bids::sub-01/anat/sub-01_T1w.nii#97a89211"
+        ],
+        "AssociatedWith": [
+          "bids::prov#spm-fa0baf93"
+        ],
+        "Command": "matlabbatch{6}.spm.spatial.coreg.estimate.ref(1) = cfg_dep('Realign: Estimate & Reslice: Mean Image', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','rmean'));\nmatlabbatch{6}.spm.spatial.coreg.estimate.source(1) = cfg_dep('Gunzip Files: Gunzipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{6}.spm.spatial.coreg.estimate.other = {''};\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.cost_fun = 'nmi';\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.sep = [4 2];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.tol = [0.02 0.02 0.02 0.001 0.001 0.001 0.01 0.01 0.01 0.001 0.001 0.001];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.fwhm = [7 7];",
+        "StartedAtTime": "2025-05-28T14:48:12",
+        "EndedAtTime": "2025-05-28T14:48:17"
+      },
+      {
+        "Id": "bids::prov#segment-7d5d4ac5",
+        "Label": "Segment",
+        "Used": [
+          "bids::prov#entity-28c0ba28",
+          "bids::sub-01/anat/sub-01_T1w.nii"
+        ],
+        "AssociatedWith": [
+          "bids::prov#spm-fa0baf93"
+        ],
+        "Command": "matlabbatch{7}.spm.spatial.preproc.channel.vols(1) = cfg_dep('Gunzip Files: Gunzipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{7}.spm.spatial.preproc.channel.biasreg = 0.001;\nmatlabbatch{7}.spm.spatial.preproc.channel.biasfwhm = 60;\nmatlabbatch{7}.spm.spatial.preproc.channel.write = [0 1];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).tpm = {'/opt/spm12-r7219/spm12_mcr/spm12/tpm/TPM.nii,1'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).tpm = {'/opt/spm12-r7219/spm12_mcr/spm12/tpm/TPM.nii,2'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).tpm = {'/opt/spm12-r7219/spm12_mcr/spm12/tpm/TPM.nii,3'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).tpm = {'/opt/spm12-r7219/spm12_mcr/spm12/tpm/TPM.nii,4'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).ngaus = 3;\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).tpm = {'/opt/spm12-r7219/spm12_mcr/spm12/tpm/TPM.nii,5'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).ngaus = 4;\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).tpm = {'/opt/spm12-r7219/spm12_mcr/spm12/tpm/TPM.nii,6'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).native = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.warp.mrf = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.cleanup = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.reg = [0 0.001 0.5 0.05 0.2];\nmatlabbatch{7}.spm.spatial.preproc.warp.affreg = 'mni';\nmatlabbatch{7}.spm.spatial.preproc.warp.fwhm = 0;\nmatlabbatch{7}.spm.spatial.preproc.warp.samp = 3;\nmatlabbatch{7}.spm.spatial.preproc.warp.write = [0 1];\nmatlabbatch{7}.spm.spatial.preproc.warp.vox = NaN;\nmatlabbatch{7}.spm.spatial.preproc.warp.bb = [NaN NaN NaN NaN NaN NaN];",
+        "StartedAtTime": "2025-05-28T14:48:17",
+        "EndedAtTime": "2025-05-28T14:50:10"
+      },
+      {
+        "Id": "bids::prov#normalize-58f60575",
+        "Label": "Normalize",
+        "Used": [
+          "bids::sub-01/anat/y_sub-01_T1w.nii",
+          "bids::sub-01/func/rsub-01_task-tonecounting_bold.nii"
+        ],
+        "AssociatedWith": [
+          "bids::prov#spm-fa0baf93"
+        ],
+        "Command": "matlabbatch{8}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{8}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Realign: Estimate & Reslice: Resliced Images (Sess 1)', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','sess', '()',{1}, '.','rfiles'));\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.prefix = 'w';",
+        "StartedAtTime": "2025-05-28T14:50:10",
+        "EndedAtTime": "2025-05-28T14:50:11"
+      },
+      {
+        "Id": "bids::prov#normalize-7a89965b",
+        "Label": "Normalize",
+        "Used": [
+          "bids::sub-01/anat/y_sub-01_T1w.nii",
+          "bids::sub-01/anat/msub-01_T1w.nii"
+        ],
+        "AssociatedWith": [
+          "bids::prov#spm-fa0baf93"
+        ],
+        "Command": "matlabbatch{9}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Segment: Bias Corrected (1)', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','channel', '()',{1}, '.','biascorr', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.prefix = 'w';",
+        "StartedAtTime": "2025-05-28T14:50:10",
+        "EndedAtTime": "2025-05-28T14:50:11"
+      },
+      {
+        "Id": "bids::prov#smooth-36370afe",
+        "Label": "Smooth",
+        "Used": [
+          "bids::sub-01/func/wrsub-01_task-tonecounting_bold.nii"
+        ],
+        "AssociatedWith": [
+          "bids::prov#spm-fa0baf93"
+        ],
+        "Command": "matlabbatch{10}.spm.spatial.smooth.data(1) = cfg_dep('Normalise: Write: Normalised Images (Subj 1)', substruct('.','val', '{}',{8}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{1}, '.','files'));\nmatlabbatch{10}.spm.spatial.smooth.fwhm = [6 6 6];\nmatlabbatch{10}.spm.spatial.smooth.dtype = 0;\nmatlabbatch{10}.spm.spatial.smooth.im = 0;\nmatlabbatch{10}.spm.spatial.smooth.prefix = 's';",
+        "StartedAtTime": "2025-05-28T14:50:11",
+        "EndedAtTime": "2025-05-28T14:50:12"
+      }
+    ],
+    "Files": [
+      {
+        "Id": "bids:ds000011:sub-01/func/sub-01_task-tonecounting_bold.nii.gz",
+        "Label": "sub-01_task-tonecounting_bold.nii.gz",
+        "AtLocation": "data/sub-01/func/sub-01_task-tonecounting_bold.nii.gz",
+        "Digest": {
+          "SHA-256": "c02dc3b622a92fdcdaacb1dd198cd45b4004f326dd1f1abbc4be15a5e4cbc57d"
+        }
+      },
+      {
+        "Id": "bids:ds000011:sub-01/anat/sub-01_T1w.nii.gz",
+        "Label": "sub-01_T1w.nii.gz",
+        "AtLocation": "data/sub-01/anat/sub-01_T1w.nii.gz",
+        "Digest": {
+          "SHA-256": "66eeafb465559148e0222d4079558a8354eb09b9efabcc47cd5b8af6eed51907"
+        }
+      },
+      {
+        "Id": "bids::prov#entity-28c0ba28",
+        "Label": "TPM.nii",
+        "AtLocation": "spm12/tpm/TPM.nii",
+        "Digest": {
+          "SHA-256": "259527f0d92ca5eb0c21684f854e9d8cd7104f9f6a7ebf17ee98de420d9fc68f"
+        }
+      },
+      {
+        "Id": "bids::sub-01/func/sub-01_task-tonecounting_bold.nii.gz#5ff4404f",
+        "Label": "sub-01_task-tonecounting_bold.nii.gz",
+        "AtLocation": "sub-01/func/sub-01_task-tonecounting_bold.nii.gz",
+        "GeneratedBy": [
+          "bids::prov#movefile-26803be5"
+        ],
+        "Digest": {
+          "SHA-256": "c02dc3b622a92fdcdaacb1dd198cd45b4004f326dd1f1abbc4be15a5e4cbc57d"
+        }
+      },
+      {
+        "Id": "bids::sub-01/anat/sub-01_T1w.nii.gz#b31b2089",
+        "Label": "sub-01_T1w.nii.gz",
+        "AtLocation": "sub-01/anat/sub-01_T1w.nii.gz",
+        "GeneratedBy": [
+          "bids::prov#movefile-bac3f385"
+        ],
+        "Digest": {
+          "SHA-256": "66eeafb465559148e0222d4079558a8354eb09b9efabcc47cd5b8af6eed51907"
+        }
+      },
+      {
+        "Id": "bids::sub-01/func/sub-01_task-tonecounting_bold.nii#487a9894",
+        "Label": "sub-01_task-tonecounting_bold.nii",
+        "AtLocation": "sub-01/func/sub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": [
+          "bids::prov#gunzip-ca36a952"
+        ],
+        "Digest": {
+          "SHA-256": "672fafcd016b2442fcb7df90a6893a97cb1cd19fb70361dc70fb81d755ff74ea"
+        }
+      },
+      {
+        "Id": "bids::sub-01/anat/sub-01_T1w.nii#97a89211",
+        "Label": "sub-01_T1w.nii",
+        "AtLocation": "sub-01/anat/sub-01_T1w.nii",
+        "GeneratedBy": [
+          "bids::prov#gunzip-e9264918"
+        ],
+        "Digest": {
+          "SHA-256": "45485541db5734f565b7cac3e009f8b02907245fc6db435c700e84d1037773b5"
+        }
+      },
+      {
+        "Id": "bids::sub-01/func/sub-01_task-tonecounting_bold.nii",
+        "Label": "sub-01_task-tonecounting_bold.nii",
+        "AtLocation": "sub-01/func/sub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": [
+          "bids::prov#realign-acea8093"
+        ],
+        "Digest": {
+          "SHA-256": "a4e801438b9c36df010309c94fc4ef8b07d95e7d9cb2edb8c212a5e5efc78d90"
+        }
+      },
+      {
+        "Id": "bids::sub-01/func/sub-01_task-tonecounting_bold.mat",
+        "Label": "sub-01_task-tonecounting_bold.mat",
+        "AtLocation": "sub-01/func/sub-01_task-tonecounting_bold.mat",
+        "GeneratedBy": [
+          "bids::prov#realign-acea8093"
+        ],
+        "Digest": {
+          "SHA-256": "04e7e267a3697ee5680b2c59dd685c61394b75c990fd1c7d5409d1bd8be046bb"
+        }
+      },
+      {
+        "Id": "bids::sub-01/anat/sub-01_T1w_seg8.mat",
+        "Label": "sub-01_T1w_seg8.mat",
+        "AtLocation": "sub-01/anat/sub-01_T1w_seg8.mat",
+        "GeneratedBy": [
+          "bids::prov#segment-7d5d4ac5"
+        ],
+        "Digest": {
+          "SHA-256": "2631f511158146fd154cc4e14ed185cbe96a8c692d33492df457e7c3768bb41e"
+        }
+      },
+      {
+        "Id": "bids::sub-01/anat/c1sub-01_T1w.nii",
+        "Label": "c1sub-01_T1w.nii",
+        "AtLocation": "sub-01/anat/c1sub-01_T1w.nii",
+        "GeneratedBy": "bids::prov#segment-7d5d4ac5",
+        "Digest": {
+          "SHA-256": "4ee9cdc19e6d2d15c79d1a0435542b302b31b576c6f40394ec1d55b3cc7351a1"
+        }
+      },
+      {
+        "Id": "bids::sub-01/anat/c2sub-01_T1w.nii",
+        "Label": "c2sub-01_T1w.nii",
+        "AtLocation": "sub-01/anat/c2sub-01_T1w.nii",
+        "GeneratedBy": "bids::prov#segment-7d5d4ac5",
+        "Digest": {
+          "SHA-256": "d1fa6211974992935cbf9b504e2deac8f75e5bb079765aba08fdb56d3263a539"
+        }
+      },
+      {
+        "Id": "bids::sub-01/anat/c3sub-01_T1w.nii",
+        "Label": "c3sub-01_T1w.nii",
+        "AtLocation": "sub-01/anat/c3sub-01_T1w.nii",
+        "GeneratedBy": "bids::prov#segment-7d5d4ac5",
+        "Digest": {
+          "SHA-256": "9d3223664bb5610129474cc4d365f1c369f846f8c83a6872ba766227fcf4ba65"
+        }
+      },
+      {
+        "Id": "bids::sub-01/anat/c4sub-01_T1w.nii",
+        "Label": "c4sub-01_T1w.nii",
+        "AtLocation": "sub-01/anat/c4sub-01_T1w.nii",
+        "GeneratedBy": "bids::prov#segment-7d5d4ac5",
+        "Digest": {
+          "SHA-256": "b59a29a23ad0c543324695ee73e21bf0b979a05727c7cd6198d8fe7eb9b1a5a1"
+        }
+      },
+      {
+        "Id": "bids::sub-01/anat/c5sub-01_T1w.nii",
+        "Label": "c5sub-01_T1w.nii",
+        "AtLocation": "sub-01/anat/c5sub-01_T1w.nii",
+        "GeneratedBy": "bids::prov#segment-7d5d4ac5",
+        "Digest": {
+          "SHA-256": "ecfb322b8de97d42dd423965b5f5d9d6dea2e8f4299d56a4a0e13b2a923f406b"
+        }
+      },
+      {
+        "Id": "bids::sub-01/anat/msub-01_T1w.nii",
+        "Label": "msub-01_T1w.nii",
+        "AtLocation": "sub-01/anat/msub-01_T1w.nii",
+        "GeneratedBy": "bids::prov#segment-7d5d4ac5",
+        "Digest": {
+          "SHA-256": "2e93b52ab94f2de40d681226f790d835f80768b3c93052f1f5326650f6903787"
+        }
+      },
+      {
+        "Id": "bids::sub-01/anat/sub-01_T1w.nii",
+        "Label": "sub-01_T1w.nii",
+        "AtLocation": "sub-01/anat/sub-01_T1w.nii",
+        "GeneratedBy": "bids::prov#coregister-6d38be4a",
+        "Digest": {
+          "SHA-256": "f29cb68cce4cb3aa2ccbc791aceff3705a23e07dfc40c045a7ce3879ebc1f338"
+        }
+      },
+      {
+        "Id": "bids::sub-01/anat/sub-01_T1w_seg8.mat",
+        "Label": "sub-01_T1w_seg8.mat",
+        "AtLocation": "sub-01/anat/sub-01_T1w_seg8.mat",
+        "GeneratedBy": "bids::prov#segment-7d5d4ac5",
+        "Digest": {
+          "SHA-256": "cdd06d2e158ab441583bef1ab549eae98a0e3bd2aea5bbdd5495d0a2b3042422"
+        }
+      },
+      {
+        "Id": "bids::sub-01/anat/wmsub-01_T1w.nii",
+        "Label": "wmsub-01_T1w.nii",
+        "AtLocation": "sub-01/anat/wmsub-01_T1w.nii",
+        "GeneratedBy": "bids::prov#normalize-7a89965b",
+        "Digest": {
+          "SHA-256": "eec0a3f558277a6947403a858e922192956cccc9253517e7fe2f8e63aaad935a"
+        }
+      },
+      {
+        "Id": "bids::sub-01/anat/y_sub-01_T1w.nii",
+        "Label": "y_sub-01_T1w.nii",
+        "AtLocation": "sub-01/anat/y_sub-01_T1w.nii",
+        "GeneratedBy": "bids::prov#segment-7d5d4ac5",
+        "Digest": {
+          "SHA-256": "926c276c324b3b36f1c8288309b0753aeed20e707fddfb6054b4d8ddfca50c6e"
+        }
+      },
+      {
+        "Id": "bids::sub-01/func/meansub-01_task-tonecounting_bold.nii",
+        "Label": "meansub-01_task-tonecounting_bold.nii",
+        "AtLocation": "sub-01/func/meansub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": "bids::prov#realign-acea8093",
+        "Digest": {
+          "SHA-256": "a4a7dd08d305ada75d3c3643dc5f1b96a6d5d94657f8aea79b6d15431845179a"
+        }
+      },
+      {
+        "Id": "bids::sub-01/func/rp_sub-01_task-tonecounting_bold.txt",
+        "Label": "rp_sub-01_task-tonecounting_bold.txt",
+        "AtLocation": "sub-01/func/rp_sub-01_task-tonecounting_bold.txt",
+        "GeneratedBy": "bids::prov#realign-acea8093",
+        "Digest": {
+          "SHA-256": "c2a488c8cde52cd8e4f367c9648cef82035a07358f83baa7e135dca0da681e2b"
+        }
+      },
+      {
+        "Id": "bids::sub-01/func/rsub-01_task-tonecounting_bold.nii",
+        "Label": "rsub-01_task-tonecounting_bold.nii",
+        "AtLocation": "sub-01/func/rsub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": "bids::prov#realign-acea8093",
+        "Digest": {
+          "SHA-256": "4aa86c3237d1e8b23417b91e2cb919b59e4aa5fae9beb803fa916c906926bded"
+        }
+      },
+      {
+        "Id": "bids::sub-01/func/swrsub-01_task-tonecounting_bold.nii",
+        "Label": "swrsub-01_task-tonecounting_bold.nii",
+        "AtLocation": "sub-01/func/swrsub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": "bids::prov#smooth-36370afe",
+        "Digest": {
+          "SHA-256": "62dea718e44b7914ba88fc60e713a0fc17f3665e37b156436edcad606ffc42be"
+        }
+      },
+      {
+        "Id": "bids::sub-01/func/wrsub-01_task-tonecounting_bold.nii",
+        "Label": "wrsub-01_task-tonecounting_bold.nii",
+        "AtLocation": "sub-01/func/wrsub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": "bids::prov#normalize-58f60575",
+        "Digest": {
+          "SHA-256": "5ed83909bc333eefede28b971461d95a0d20783985ca0447b1e73cb2b6124fba"
+        }
+      }
+    ],
+    "Datasets": [],
+    "prov:Entity": [],
+    "Environments": []
+  }
+}
\ No newline at end of file
diff --git a/provenance_spm/docs/prov-spm.png b/provenance_spm/docs/prov-spm.png
new file mode 100644
index 000000000..98996099d
Binary files /dev/null and b/provenance_spm/docs/prov-spm.png differ
diff --git a/provenance_spm/prov/prov-spm_act.json b/provenance_spm/prov/prov-spm_act.json
new file mode 100644
index 000000000..c25f26a68
--- /dev/null
+++ b/provenance_spm/prov/prov-spm_act.json
@@ -0,0 +1,138 @@
+{
+  "Activities": [
+    {
+      "Id": "bids::prov#movefile-26803be5",
+      "Label": "Move file",
+      "Used": [
+        "bids:ds000011:sub-01/func/sub-01_task-tonecounting_bold.nii.gz"
+      ],
+      "AssociatedWith": [
+        "bids::prov#spm-fa0baf93"
+      ],
+      "Command": "matlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.files = {'data/sub-01/func/sub-01_task-tonecounting_bold.nii.gz'};\nmatlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'sub-01/func'};",
+      "StartedAtTime": "2025-05-28T14:48:00",
+      "EndedAtTime": "2025-05-28T14:48:01"
+    },
+    {
+      "Id": "bids::prov#movefile-bac3f385",
+      "Label": "Move file",
+      "Used": [
+        "bids:ds000011:sub-01/anat/sub-01_T1w.nii.gz"
+      ],
+      "AssociatedWith": [
+        "bids::prov#spm-fa0baf93"
+      ],
+      "Command": "matlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.files = {'data/sub-01/anat/sub-01_T1w.nii.gz'};\nmatlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'sub-01/anat'};",
+      "StartedAtTime": "2025-05-28T14:48:00",
+      "EndedAtTime": "2025-05-28T14:48:01"
+    },
+    {
+      "Id": "bids::prov#gunzip-ca36a952",
+      "Label": "Gunzip",
+      "Used": [
+        "bids::sub-01/func/sub-01_task-tonecounting_bold.nii.gz#5ff4404f"
+      ],
+      "AssociatedWith": [
+        "bids::prov#spm-fa0baf93"
+      ],
+      "Command": "matlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));\nmatlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.outdir = {''};\nmatlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.keep = false;",
+      "StartedAtTime": "2025-05-28T14:48:01",
+      "EndedAtTime": "2025-05-28T14:48:02"
+    },
+    {
+      "Id": "bids::prov#gunzip-e9264918",
+      "Label": "Gunzip",
+      "Used": [
+        "bids::sub-01/anat/sub-01_T1w.nii.gz#b31b2089"
+      ],
+      "AssociatedWith": [
+        "bids::prov#spm-fa0baf93"
+      ],
+      "Command": "matlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));\nmatlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.outdir = {''};\nmatlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.keep = false;",
+      "StartedAtTime": "2025-05-28T14:48:01",
+      "EndedAtTime": "2025-05-28T14:48:02"
+    },
+    {
+      "Id": "bids::prov#realign-acea8093",
+      "Label": "Realign",
+      "Used": [
+        "bids::sub-01/func/sub-01_task-tonecounting_bold.nii#487a9894"
+      ],
+      "AssociatedWith": [
+        "bids::prov#spm-fa0baf93"
+      ],
+      "Command": "matlabbatch{5}.spm.spatial.realign.estwrite.data{1}(1) = cfg_dep('Gunzip Files: Gunzipped Files', substruct('.','val', '{}',{3}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.quality = 0.9;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.sep = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.fwhm = 5;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.rtm = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.interp = 2;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.weight = '';\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.which = [2 1];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.interp = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.mask = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.prefix = 'r';",
+      "StartedAtTime": "2025-05-28T14:48:03",
+      "EndedAtTime": "2025-05-28T14:48:12"
+    },
+    {
+      "Id": "bids::prov#coregister-6d38be4a",
+      "Label": "Coregister",
+      "Used": [
+        "bids::sub-01/func/meansub-01_task-tonecounting_bold.nii",
+        "bids::sub-01/anat/sub-01_T1w.nii#97a89211"
+      ],
+      "AssociatedWith": [
+        "bids::prov#spm-fa0baf93"
+      ],
+      "Command": "matlabbatch{6}.spm.spatial.coreg.estimate.ref(1) = cfg_dep('Realign: Estimate & Reslice: Mean Image', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','rmean'));\nmatlabbatch{6}.spm.spatial.coreg.estimate.source(1) = cfg_dep('Gunzip Files: Gunzipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{6}.spm.spatial.coreg.estimate.other = {''};\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.cost_fun = 'nmi';\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.sep = [4 2];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.tol = [0.02 0.02 0.02 0.001 0.001 0.001 0.01 0.01 0.01 0.001 0.001 0.001];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.fwhm = [7 7];",
+      "StartedAtTime": "2025-05-28T14:48:12",
+      "EndedAtTime": "2025-05-28T14:48:17"
+    },
+    {
+      "Id": "bids::prov#segment-7d5d4ac5",
+      "Label": "Segment",
+      "Used": [
+        "bids::prov#entity-28c0ba28",
+        "bids::sub-01/anat/sub-01_T1w.nii"
+      ],
+      "AssociatedWith": [
+        "bids::prov#spm-fa0baf93"
+      ],
+      "Command": "matlabbatch{7}.spm.spatial.preproc.channel.vols(1) = cfg_dep('Gunzip Files: Gunzipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{7}.spm.spatial.preproc.channel.biasreg = 0.001;\nmatlabbatch{7}.spm.spatial.preproc.channel.biasfwhm = 60;\nmatlabbatch{7}.spm.spatial.preproc.channel.write = [0 1];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).tpm = {'/opt/spm12-r7219/spm12_mcr/spm12/tpm/TPM.nii,1'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).tpm = {'/opt/spm12-r7219/spm12_mcr/spm12/tpm/TPM.nii,2'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).tpm = {'/opt/spm12-r7219/spm12_mcr/spm12/tpm/TPM.nii,3'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).tpm = {'/opt/spm12-r7219/spm12_mcr/spm12/tpm/TPM.nii,4'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).ngaus = 3;\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).tpm = {'/opt/spm12-r7219/spm12_mcr/spm12/tpm/TPM.nii,5'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).ngaus = 4;\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).tpm = {'/opt/spm12-r7219/spm12_mcr/spm12/tpm/TPM.nii,6'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).native = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.warp.mrf = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.cleanup = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.reg = [0 0.001 0.5 0.05 0.2];\nmatlabbatch{7}.spm.spatial.preproc.warp.affreg = 'mni';\nmatlabbatch{7}.spm.spatial.preproc.warp.fwhm = 0;\nmatlabbatch{7}.spm.spatial.preproc.warp.samp = 3;\nmatlabbatch{7}.spm.spatial.preproc.warp.write = [0 1];\nmatlabbatch{7}.spm.spatial.preproc.warp.vox = NaN;\nmatlabbatch{7}.spm.spatial.preproc.warp.bb = [NaN NaN NaN NaN NaN NaN];",
+      "StartedAtTime": "2025-05-28T14:48:17",
+      "EndedAtTime": "2025-05-28T14:50:10"
+    },
+    {
+      "Id": "bids::prov#normalize-58f60575",
+      "Label": "Normalize",
+      "Used": [
+        "bids::sub-01/anat/y_sub-01_T1w.nii",
+        "bids::sub-01/func/rsub-01_task-tonecounting_bold.nii"
+      ],
+      "AssociatedWith": [
+        "bids::prov#spm-fa0baf93"
+      ],
+      "Command": "matlabbatch{8}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{8}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Realign: Estimate & Reslice: Resliced Images (Sess 1)', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','sess', '()',{1}, '.','rfiles'));\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.prefix = 'w';",
+      "StartedAtTime": "2025-05-28T14:50:10",
+      "EndedAtTime": "2025-05-28T14:50:11"
+    },
+    {
+      "Id": "bids::prov#normalize-7a89965b",
+      "Label": "Normalize",
+      "Used": [
+        "bids::sub-01/anat/y_sub-01_T1w.nii",
+        "bids::sub-01/anat/msub-01_T1w.nii"
+      ],
+      "AssociatedWith": [
+        "bids::prov#spm-fa0baf93"
+      ],
+      "Command": "matlabbatch{9}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Segment: Bias Corrected (1)', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','channel', '()',{1}, '.','biascorr', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.prefix = 'w';",
+      "StartedAtTime": "2025-05-28T14:50:10",
+      "EndedAtTime": "2025-05-28T14:50:11"
+    },
+    {
+      "Id": "bids::prov#smooth-36370afe",
+      "Label": "Smooth",
+      "Used": [
+        "bids::sub-01/func/wrsub-01_task-tonecounting_bold.nii"
+      ],
+      "AssociatedWith": [
+        "bids::prov#spm-fa0baf93"
+      ],
+      "Command": "matlabbatch{10}.spm.spatial.smooth.data(1) = cfg_dep('Normalise: Write: Normalised Images (Subj 1)', substruct('.','val', '{}',{8}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{1}, '.','files'));\nmatlabbatch{10}.spm.spatial.smooth.fwhm = [6 6 6];\nmatlabbatch{10}.spm.spatial.smooth.dtype = 0;\nmatlabbatch{10}.spm.spatial.smooth.im = 0;\nmatlabbatch{10}.spm.spatial.smooth.prefix = 's';",
+      "StartedAtTime": "2025-05-28T14:50:11",
+      "EndedAtTime": "2025-05-28T14:50:12"
+    }
+  ]
+}
\ No newline at end of file
diff --git a/provenance_spm/prov/prov-spm_ent.json b/provenance_spm/prov/prov-spm_ent.json
new file mode 100644
index 000000000..207fdc78c
--- /dev/null
+++ b/provenance_spm/prov/prov-spm_ent.json
@@ -0,0 +1,105 @@
+{
+  "Files": [
+    {
+      "Id": "bids:ds000011:sub-01/func/sub-01_task-tonecounting_bold.nii.gz",
+      "Label": "sub-01_task-tonecounting_bold.nii.gz",
+      "AtLocation": "data/sub-01/func/sub-01_task-tonecounting_bold.nii.gz",
+      "Digest": {
+        "SHA-256": "c02dc3b622a92fdcdaacb1dd198cd45b4004f326dd1f1abbc4be15a5e4cbc57d"
+      }
+    },
+    {
+      "Id": "bids:ds000011:sub-01/anat/sub-01_T1w.nii.gz",
+      "Label": "sub-01_T1w.nii.gz",
+      "AtLocation": "data/sub-01/anat/sub-01_T1w.nii.gz",
+      "Digest": {
+        "SHA-256": "66eeafb465559148e0222d4079558a8354eb09b9efabcc47cd5b8af6eed51907"
+      }
+    },
+    {
+      "Id": "bids::prov#entity-28c0ba28",
+      "Label": "TPM.nii",
+      "AtLocation": "spm12/tpm/TPM.nii",
+      "Digest": {
+        "SHA-256": "259527f0d92ca5eb0c21684f854e9d8cd7104f9f6a7ebf17ee98de420d9fc68f"
+      }
+    },
+    {
+      "Id": "bids::sub-01/func/sub-01_task-tonecounting_bold.nii.gz#5ff4404f",
+      "Label": "sub-01_task-tonecounting_bold.nii.gz",
+      "AtLocation": "sub-01/func/sub-01_task-tonecounting_bold.nii.gz",
+      "GeneratedBy": [
+        "bids::prov#movefile-26803be5"
+      ],
+      "Digest": {
+        "SHA-256": "c02dc3b622a92fdcdaacb1dd198cd45b4004f326dd1f1abbc4be15a5e4cbc57d"
+      }
+    },
+    {
+      "Id": "bids::sub-01/anat/sub-01_T1w.nii.gz#b31b2089",
+      "Label": "sub-01_T1w.nii.gz",
+      "AtLocation": "sub-01/anat/sub-01_T1w.nii.gz",
+      "GeneratedBy": [
+        "bids::prov#movefile-bac3f385"
+      ],
+      "Digest": {
+        "SHA-256": "66eeafb465559148e0222d4079558a8354eb09b9efabcc47cd5b8af6eed51907"
+      }
+    },
+    {
+      "Id": "bids::sub-01/func/sub-01_task-tonecounting_bold.nii#487a9894",
+      "Label": "sub-01_task-tonecounting_bold.nii",
+      "AtLocation": "sub-01/func/sub-01_task-tonecounting_bold.nii",
+      "GeneratedBy": [
+        "bids::prov#gunzip-ca36a952"
+      ],
+      "Digest": {
+        "SHA-256": "672fafcd016b2442fcb7df90a6893a97cb1cd19fb70361dc70fb81d755ff74ea"
+      }
+    },
+    {
+      "Id": "bids::sub-01/anat/sub-01_T1w.nii#97a89211",
+      "Label": "sub-01_T1w.nii",
+      "AtLocation": "sub-01/anat/sub-01_T1w.nii",
+      "GeneratedBy": [
+        "bids::prov#gunzip-e9264918"
+      ],
+      "Digest": {
+        "SHA-256": "45485541db5734f565b7cac3e009f8b02907245fc6db435c700e84d1037773b5"
+      }
+    },
+    {
+      "Id": "bids::sub-01/func/sub-01_task-tonecounting_bold.nii",
+      "Label": "sub-01_task-tonecounting_bold.nii",
+      "AtLocation": "sub-01/func/sub-01_task-tonecounting_bold.nii",
+      "GeneratedBy": [
+        "bids::prov#realign-acea8093"
+      ],
+      "Digest": {
+        "SHA-256": "a4e801438b9c36df010309c94fc4ef8b07d95e7d9cb2edb8c212a5e5efc78d90"
+      }
+    },
+    {
+      "Id": "bids::sub-01/func/sub-01_task-tonecounting_bold.mat",
+      "Label": "sub-01_task-tonecounting_bold.mat",
+      "AtLocation": "sub-01/func/sub-01_task-tonecounting_bold.mat",
+      "GeneratedBy": [
+        "bids::prov#realign-acea8093"
+      ],
+      "Digest": {
+        "SHA-256": "04e7e267a3697ee5680b2c59dd685c61394b75c990fd1c7d5409d1bd8be046bb"
+      }
+    },
+    {
+      "Id": "bids::sub-01/anat/sub-01_T1w_seg8.mat",
+      "Label": "sub-01_T1w_seg8.mat",
+      "AtLocation": "sub-01/anat/sub-01_T1w_seg8.mat",
+      "GeneratedBy": [
+        "bids::prov#segment-7d5d4ac5"
+      ],
+      "Digest": {
+        "SHA-256": "2631f511158146fd154cc4e14ed185cbe96a8c692d33492df457e7c3768bb41e"
+      }
+    }
+  ]
+}
\ No newline at end of file
diff --git a/provenance_spm/prov/prov-spm_soft.json b/provenance_spm/prov/prov-spm_soft.json
new file mode 100644
index 000000000..ac88cf33e
--- /dev/null
+++ b/provenance_spm/prov/prov-spm_soft.json
@@ -0,0 +1,12 @@
+{
+  "Software": [
+    {
+      "Id": "bids::prov#spm-fa0baf93",
+      "AlternativeIdentifier": [
+        "RRID:SCR_007037"
+      ],
+      "Label": "SPM",
+      "Version": "SPM12r7771"
+    }
+  ]
+}
\ No newline at end of file
diff --git a/provenance_spm/sub-01/anat/c1sub-01_T1w.json b/provenance_spm/sub-01/anat/c1sub-01_T1w.json
new file mode 100644
index 000000000..70b8f9043
--- /dev/null
+++ b/provenance_spm/sub-01/anat/c1sub-01_T1w.json
@@ -0,0 +1,6 @@
+{
+    "GeneratedBy": "bids::prov#segment-7d5d4ac5",
+    "Digest": {
+        "SHA-256": "4ee9cdc19e6d2d15c79d1a0435542b302b31b576c6f40394ec1d55b3cc7351a1"
+    }
+}
diff --git a/provenance_spm/sub-01/anat/c1sub-01_T1w.nii b/provenance_spm/sub-01/anat/c1sub-01_T1w.nii
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_spm/sub-01/anat/c2sub-01_T1w.json b/provenance_spm/sub-01/anat/c2sub-01_T1w.json
new file mode 100644
index 000000000..4f18729c1
--- /dev/null
+++ b/provenance_spm/sub-01/anat/c2sub-01_T1w.json
@@ -0,0 +1,6 @@
+{
+    "GeneratedBy": "bids::prov#segment-7d5d4ac5",
+    "Digest": {
+        "SHA-256": "d1fa6211974992935cbf9b504e2deac8f75e5bb079765aba08fdb56d3263a539"
+    }
+}
\ No newline at end of file
diff --git a/provenance_spm/sub-01/anat/c2sub-01_T1w.nii b/provenance_spm/sub-01/anat/c2sub-01_T1w.nii
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_spm/sub-01/anat/c3sub-01_T1w.json b/provenance_spm/sub-01/anat/c3sub-01_T1w.json
new file mode 100644
index 000000000..af222dff4
--- /dev/null
+++ b/provenance_spm/sub-01/anat/c3sub-01_T1w.json
@@ -0,0 +1,6 @@
+{
+    "GeneratedBy": "bids::prov#segment-7d5d4ac5",
+    "Digest": {
+        "SHA-256": "9d3223664bb5610129474cc4d365f1c369f846f8c83a6872ba766227fcf4ba65"
+    }
+}
\ No newline at end of file
diff --git a/provenance_spm/sub-01/anat/c3sub-01_T1w.nii b/provenance_spm/sub-01/anat/c3sub-01_T1w.nii
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_spm/sub-01/anat/c4sub-01_T1w.json b/provenance_spm/sub-01/anat/c4sub-01_T1w.json
new file mode 100644
index 000000000..296402063
--- /dev/null
+++ b/provenance_spm/sub-01/anat/c4sub-01_T1w.json
@@ -0,0 +1,6 @@
+{
+    "GeneratedBy": "bids::prov#segment-7d5d4ac5",
+    "Digest": {
+        "SHA-256": "b59a29a23ad0c543324695ee73e21bf0b979a05727c7cd6198d8fe7eb9b1a5a1"
+    }
+}
\ No newline at end of file
diff --git a/provenance_spm/sub-01/anat/c4sub-01_T1w.nii b/provenance_spm/sub-01/anat/c4sub-01_T1w.nii
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_spm/sub-01/anat/c5sub-01_T1w.json b/provenance_spm/sub-01/anat/c5sub-01_T1w.json
new file mode 100644
index 000000000..14a774afa
--- /dev/null
+++ b/provenance_spm/sub-01/anat/c5sub-01_T1w.json
@@ -0,0 +1,6 @@
+{
+    "GeneratedBy": "bids::prov#segment-7d5d4ac5",
+    "Digest": {
+        "SHA-256": "ecfb322b8de97d42dd423965b5f5d9d6dea2e8f4299d56a4a0e13b2a923f406b"
+    }
+}
\ No newline at end of file
diff --git a/provenance_spm/sub-01/anat/c5sub-01_T1w.nii b/provenance_spm/sub-01/anat/c5sub-01_T1w.nii
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_spm/sub-01/anat/msub-01_T1w.json b/provenance_spm/sub-01/anat/msub-01_T1w.json
new file mode 100644
index 000000000..2524109aa
--- /dev/null
+++ b/provenance_spm/sub-01/anat/msub-01_T1w.json
@@ -0,0 +1,6 @@
+{
+	"GeneratedBy": "bids::prov#segment-7d5d4ac5",
+	"Digest": {
+		"SHA-256": "2e93b52ab94f2de40d681226f790d835f80768b3c93052f1f5326650f6903787"
+	}
+}
diff --git a/provenance_spm/sub-01/anat/msub-01_T1w.nii b/provenance_spm/sub-01/anat/msub-01_T1w.nii
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_spm/sub-01/anat/sub-01_T1w.json b/provenance_spm/sub-01/anat/sub-01_T1w.json
new file mode 100644
index 000000000..f8bc782e6
--- /dev/null
+++ b/provenance_spm/sub-01/anat/sub-01_T1w.json
@@ -0,0 +1,6 @@
+{
+  "GeneratedBy": "bids::prov#coregister-6d38be4a",
+  "Digest": {
+    "SHA-256": "f29cb68cce4cb3aa2ccbc791aceff3705a23e07dfc40c045a7ce3879ebc1f338"
+  }
+}
\ No newline at end of file
diff --git a/provenance_spm/sub-01/anat/sub-01_T1w.nii b/provenance_spm/sub-01/anat/sub-01_T1w.nii
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_spm/sub-01/anat/sub-01_T1w_seg8.json b/provenance_spm/sub-01/anat/sub-01_T1w_seg8.json
new file mode 100644
index 000000000..2d17ecb34
--- /dev/null
+++ b/provenance_spm/sub-01/anat/sub-01_T1w_seg8.json
@@ -0,0 +1,6 @@
+{
+    "GeneratedBy": "bids::prov#segment-7d5d4ac5",
+    "Digest": {
+        "SHA-256": "cdd06d2e158ab441583bef1ab549eae98a0e3bd2aea5bbdd5495d0a2b3042422"
+    }
+}
\ No newline at end of file
diff --git a/provenance_spm/sub-01/anat/sub-01_T1w_seg8.mat b/provenance_spm/sub-01/anat/sub-01_T1w_seg8.mat
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_spm/sub-01/anat/wmsub-01_T1w.json b/provenance_spm/sub-01/anat/wmsub-01_T1w.json
new file mode 100644
index 000000000..81c2777ec
--- /dev/null
+++ b/provenance_spm/sub-01/anat/wmsub-01_T1w.json
@@ -0,0 +1,6 @@
+{
+    "GeneratedBy": "bids::prov#normalize-7a89965b",
+    "Digest": {
+        "SHA-256": "eec0a3f558277a6947403a858e922192956cccc9253517e7fe2f8e63aaad935a"
+    }
+}
diff --git a/provenance_spm/sub-01/anat/wmsub-01_T1w.nii b/provenance_spm/sub-01/anat/wmsub-01_T1w.nii
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_spm/sub-01/anat/y_sub-01_T1w.json b/provenance_spm/sub-01/anat/y_sub-01_T1w.json
new file mode 100644
index 000000000..08f354d27
--- /dev/null
+++ b/provenance_spm/sub-01/anat/y_sub-01_T1w.json
@@ -0,0 +1,6 @@
+{
+    "GeneratedBy": "bids::prov#segment-7d5d4ac5",
+    "Digest": {
+        "SHA-256": "926c276c324b3b36f1c8288309b0753aeed20e707fddfb6054b4d8ddfca50c6e"
+    }
+}
\ No newline at end of file
diff --git a/provenance_spm/sub-01/anat/y_sub-01_T1w.nii b/provenance_spm/sub-01/anat/y_sub-01_T1w.nii
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_spm/sub-01/func/meansub-01_task-tonecounting_bold.json b/provenance_spm/sub-01/func/meansub-01_task-tonecounting_bold.json
new file mode 100644
index 000000000..808270c9b
--- /dev/null
+++ b/provenance_spm/sub-01/func/meansub-01_task-tonecounting_bold.json
@@ -0,0 +1,6 @@
+{
+    "GeneratedBy": "bids::prov#realign-acea8093",
+    "Digest": {
+        "SHA-256": "a4a7dd08d305ada75d3c3643dc5f1b96a6d5d94657f8aea79b6d15431845179a"
+    }
+}
diff --git a/provenance_spm/sub-01/func/meansub-01_task-tonecounting_bold.nii b/provenance_spm/sub-01/func/meansub-01_task-tonecounting_bold.nii
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_spm/sub-01/func/rp_sub-01_task-tonecounting_bold.json b/provenance_spm/sub-01/func/rp_sub-01_task-tonecounting_bold.json
new file mode 100644
index 000000000..327999b5d
--- /dev/null
+++ b/provenance_spm/sub-01/func/rp_sub-01_task-tonecounting_bold.json
@@ -0,0 +1,6 @@
+{
+	"GeneratedBy": "bids::prov#realign-acea8093",
+	"Digest": {
+        "SHA-256": "c2a488c8cde52cd8e4f367c9648cef82035a07358f83baa7e135dca0da681e2b"
+    }
+}
diff --git a/provenance_spm/sub-01/func/rp_sub-01_task-tonecounting_bold.txt b/provenance_spm/sub-01/func/rp_sub-01_task-tonecounting_bold.txt
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_spm/sub-01/func/rsub-01_task-tonecounting_bold.json b/provenance_spm/sub-01/func/rsub-01_task-tonecounting_bold.json
new file mode 100644
index 000000000..459a1786c
--- /dev/null
+++ b/provenance_spm/sub-01/func/rsub-01_task-tonecounting_bold.json
@@ -0,0 +1,6 @@
+{
+    "GeneratedBy": "bids::prov#realign-acea8093",
+    "Digest": {
+        "SHA-256": "4aa86c3237d1e8b23417b91e2cb919b59e4aa5fae9beb803fa916c906926bded"
+    }
+}
diff --git a/provenance_spm/sub-01/func/rsub-01_task-tonecounting_bold.nii b/provenance_spm/sub-01/func/rsub-01_task-tonecounting_bold.nii
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_spm/sub-01/func/sub-01_task-tonecounting_bold.mat b/provenance_spm/sub-01/func/sub-01_task-tonecounting_bold.mat
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_spm/sub-01/func/sub-01_task-tonecounting_bold.nii b/provenance_spm/sub-01/func/sub-01_task-tonecounting_bold.nii
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_spm/sub-01/func/swrsub-01_task-tonecounting_bold.json b/provenance_spm/sub-01/func/swrsub-01_task-tonecounting_bold.json
new file mode 100644
index 000000000..be03aaf56
--- /dev/null
+++ b/provenance_spm/sub-01/func/swrsub-01_task-tonecounting_bold.json
@@ -0,0 +1,6 @@
+{
+	"GeneratedBy": "bids::prov#smooth-36370afe",
+	"Digest": {
+		"SHA-256": "62dea718e44b7914ba88fc60e713a0fc17f3665e37b156436edcad606ffc42be"
+	}
+}
diff --git a/provenance_spm/sub-01/func/swrsub-01_task-tonecounting_bold.nii b/provenance_spm/sub-01/func/swrsub-01_task-tonecounting_bold.nii
new file mode 100644
index 000000000..e69de29bb
diff --git a/provenance_spm/sub-01/func/wrsub-01_task-tonecounting_bold.json b/provenance_spm/sub-01/func/wrsub-01_task-tonecounting_bold.json
new file mode 100644
index 000000000..87601fb91
--- /dev/null
+++ b/provenance_spm/sub-01/func/wrsub-01_task-tonecounting_bold.json
@@ -0,0 +1,6 @@
+{
+	"GeneratedBy": "bids::prov#normalize-58f60575",
+	"Digest": {
+		"SHA-256": "5ed83909bc333eefede28b971461d95a0d20783985ca0447b1e73cb2b6124fba"
+	}
+}
diff --git a/provenance_spm/sub-01/func/wrsub-01_task-tonecounting_bold.nii b/provenance_spm/sub-01/func/wrsub-01_task-tonecounting_bold.nii
new file mode 100644
index 000000000..e69de29bb
diff --git a/requirements.txt b/requirements.txt
index 51b61b750..c3b19d39f 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,3 +1,4 @@
+rich
 mkdocs
 mkdocs-material
 pymdown-extensions
\ No newline at end of file